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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7X26 | 32959 | 2023-04-20 | 2022-02-25 | 3.685 | 3.39 | — | 3.9 | 0.011 | 1.46 | 1.0 | 0.09 | 14.53 | 0.01 | 2.186 | 10.90 | 9.27 | 16.2 | 81.1 | 2.7 | -3.21 | 0.68 | 0.74 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4828 | 641 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6G1K | 4339 | 2023-04-25 | 2018-03-21 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21428 | 2592 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 6PoM | 20416 | 2023-04-20 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 8D6X | 27225 | 2023-04-25 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.76 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.68 | 0.0 | 0.04 | 14.52 | 0.00 | 2.006 | 31.08 | 0.17 | 4.9 | 95.1 | 0.0 | 0.20 | 4.65 | 0.78 | 0.54 | 0.09 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✘ | 7N6B | 24206 | 2023-04-20 | 2021-06-08 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5942 | 757 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6MN7 | 9166 | 2023-04-25 | 2018-10-01 | 4.8 | 5.01 | — | 5.0 | 0.016 | 2.23 | 12.0 | 0.12 | 10.62 | 0.02 | 1.395 | 35.74 | 0.57 | 8.6 | 89.4 | 2.0 | -2.34 | 0.50 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21447 | 2418 | 66 | 0 | 192 | 0 | 0 | logfile |
✘ | 8DQ1 | 27646 | 2023-04-26 | 2022-07-18 | 4.1 | 3.85 | 3.29 | 3.9 | 0.011 | 1.10 | 3.0 | 0.06 | 18.76 | 0.01 | 2.082 | 14.69 | 0.87 | 5.7 | 94.3 | 0.0 | -1.40 | 0.44 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17754 | 1075 | 8 | 36 | 2 | 0 | 8343 | logfile |
✘ | 7A92 | 11682 | 2023-04-21 | 2020-09-01 | 4.2 | 4.58 | 4.29 | 4.2 | 0.007 | 0.84 | 0.0 | 0.06 | 14.53 | 0.01 | 2.222 | 3.92 | 1.19 | 5.2 | 94.7 | 0.1 | -2.44 | 0.77 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10040 | 1231 | 5 | 0 | 10 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-04-27 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 7VFF | 31951 | 2023-04-22 | 2021-09-13 | 4.1 | 3.76 | 3.90 | 4.0 | 0.007 | 0.72 | 0.0 | 0.05 | 13.87 | 0.00 | 2.334 | 2.40 | 0.41 | 3.6 | 96.4 | 0.0 | -0.82 | 0.79 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12579 | 1581 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7P2P | 13171 | 2023-04-20 | 2021-07-06 | 4.9 | 4.40 | 5.09 | 4.3 | 0.005 | 1.10 | 0.0 | 0.07 | 11.29 | 0.01 | 2.325 | 4.27 | 0.19 | 8.1 | 91.9 | 0.0 | -3.94 | 0.76 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4783 | 587 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 6RAJ | 4777 | 2023-04-21 | 2019-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10198 | 1282 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 6YLF | 10837 | 2023-04-24 | 2020-04-07 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6WHA | 21669 | 2023-04-20 | 2020-04-07 | 3.36 | 3.16 | — | 3.4 | 0.012 | 1.20 | 2.0 | 0.08 | 13.68 | 0.01 | 2.284 | 6.97 | 2.99 | 4.1 | 95.9 | 0.0 | -0.19 | 0.78 | 0.85 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7888 | 1074 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7oZS | 13134 | 2023-04-22 | 2021-06-28 | 3.5 | 4.00 | — | 3.6 | 0.004 | 0.79 | 0.0 | 0.05 | 13.79 | 0.01 | 2.282 | 3.82 | 0.29 | 3.7 | 96.3 | 0.0 | -1.44 | 0.89 | 0.85 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12770 | 1314 | 7 | 119 | 23 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2023-04-22 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 7T4K | 25678 | 2023-04-20 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DQ0 | 27645 | 2023-04-26 | 2022-07-18 | 3.74 | 3.61 | 3.79 | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 15.88 | 0.01 | 2.203 | 6.20 | 1.20 | 4.9 | 95.1 | 0.0 | -1.54 | 0.53 | 0.72 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17129 | 1075 | 6 | 0 | 2 | 0 | 8445 | logfile |
✘ | 6ZY9 | 11555 | 2023-04-23 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 12.81 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-04-27 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |