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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JB9 | 6413 | 2023-11-20 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 16.84 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2023-11-14 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 7RR9 | 24656 | 2023-11-14 | 2021-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9094 | 1120 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 7YRQ | 34064 | 2023-11-14 | 2022-08-10 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9812 | 1247 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7MJM | 23878 | 2023-11-21 | 2021-04-20 | 2.83 | 3.74 | — | 3.0 | 0.004 | 0.78 | 0.0 | 0.05 | 13.63 | 0.01 | 2.285 | 2.96 | 0.00 | 2.7 | 97.3 | 0.0 | -0.95 | 0.83 | 0.79 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35096 | 4312 | 28 | 0 | 68 | 0 | 0 | logfile |
✘ | 5Li0 | 4050 | 2023-11-21 | 2016-07-13 | 3.8 | 3.91 | — | 3.8 | 0.014 | 1.18 | 1.0 | 0.05 | 14.64 | 0.01 | 1.920 | 5.40 | 0.20 | 14.9 | 84.7 | 0.5 | -5.64 | 0.75 | 0.79 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 140825 | 5396 | 58 | 4575 | 41 | 162 | 0 | logfile |
✘ | 8ED8 | 28032 | 2023-11-21 | 2022-09-03 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 7UT8 | 26760 | 2023-11-17 | 2022-04-26 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20221 | 2538 | 18 | 0 | 13 | 29 | 0 | logfile |
✘ | 8BC4 | 15962 | 2023-11-16 | 2022-10-14 | 2.7 | 2.11 | 2.15 | 2.5 | 0.015 | 2.14 | 1.0 | 0.11 | 19.24 | 0.02 | 2.310 | 4.45 | 10.79 | 4.1 | 95.8 | 0.0 | -4.88 | 0.59 | 0.76 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16440 | 2167 | 29 | 0 | 9 | 270 | 0 | logfile |
✘ | 7UZ9 | 26883 | 2023-11-20 | 2022-05-08 | 3.5 | 4.40 | 3.63 | 4.5 | 0.003 | 0.59 | 0.0 | 0.04 | 12.95 | 0.00 | 2.175 | 10.65 | 0.03 | 2.8 | 97.2 | 0.0 | 0.31 | 0.66 | 0.73 | 1.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30669 | 3873 | 12 | 0 | 42 | 0 | 0 | logfile |
✘ | 6WNR | 21855 | 2023-11-22 | 2020-04-23 | 3.3 | 3.61 | — | 3.4 | 0.005 | 0.96 | 1.0 | 0.06 | 14.34 | 0.01 | 1.869 | 2.24 | 1.44 | 2.8 | 97.2 | 0.0 | -1.29 | 0.77 | 0.85 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36934 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 6RWN | 10043 | 2023-11-17 | 2019-06-05 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18346 | 2076 | 26 | 86 | 16 | 8 | 0 | logfile |
✘ | 7D65 | 30589 | 2023-11-19 | 2020-09-29 | 2.94 | 3.09 | — | 3.2 | 0.008 | 0.94 | 0.0 | 0.05 | 16.96 | 0.01 | 2.328 | 1.94 | 0.14 | 4.3 | 95.7 | 0.0 | -7.00 | 0.66 | 0.81 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26664 | 3168 | 22 | 0 | 55 | 0 | 0 | logfile |
✘ | 8C0Z | 16376 | 2023-11-16 | 2022-12-19 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15083 | 1972 | 10 | 0 | 17 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2023-11-17 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.016 | 1.26 | 0.0 | 0.06 | 18.23 | 0.04 | 1.769 | 31.76 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✘ | 6SWE | 10324 | 2023-11-18 | 2019-09-20 | 3.1 | 3.79 | 3.08 | 3.3 | 0.012 | 0.98 | 0.0 | 0.05 | 16.06 | 0.02 | 1.948 | 7.44 | 1.17 | 12.0 | 88.0 | 0.0 | -4.83 | 0.87 | 0.84 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22737 | 1523 | 21 | 486 | 9 | 18 | 0 | logfile |
✘ | 6PLV | 20377 | 2023-11-16 | 2019-07-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14655 | 1725 | 15 | 0 | 75 | 0 | 0 | logfile |
✔ | 7TTS | 26122 | 2023-11-17 | 2022-02-01 | 2.9 | 12.34 | — | — | 0.008 | 0.99 | 1.0 | 0.08 | 12.67 | 0.01 | 1.788 | 5.64 | 0.30 | 3.2 | 96.6 | 0.1 | 1.89 | 0.77 | 0.55 | -0.20 | — | 0.003 | 0.60 | 0.0 | 0.04 | 13.61 | 0.00 | 1.831 | 19.04 | 0.24 | 3.7 | 96.2 | 0.1 | 1.97 | 1.03 | 0.84 | 0.81 | -0.20 | 18793 | 2686 | 12 | 0 | 23 | 0 | 0 | logfile |
✘ | 6PNJ | 20397 | 2023-11-18 | 2019-07-02 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71511 | 6660 | 60 | 0 | 420 | 0 | 0 | logfile |
✘ | 7RR8 | 24655 | 2023-11-18 | 2021-08-09 | 3.51 | 3.20 | 3.53 | 3.1 | 0.005 | 0.79 | 3.0 | 0.05 | 14.25 | 0.00 | 2.213 | 7.81 | 0.12 | 2.9 | 97.1 | 0.0 | 0.59 | 0.75 | 0.85 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23929 | 3075 | 6 | 0 | 26 | 0 | 0 | logfile |