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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6Jo6 | 9854 | 2022-12-21 | 2019-03-20 | 2.9 | 2.92 | — | 2.9 | 0.027 | 2.68 | 0.0 | 0.09 | 18.20 | 0.02 | 1.209 | 8.01 | 0.55 | 4.2 | 95.8 | 0.1 | -2.50 | 0.79 | 0.85 | 4.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45099 | 3899 | 36 | 0 | 285 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2022-12-19 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oMB | 20124 | 2022-12-18 | 2019-04-18 | 3.7 | 3.91 | — | 3.8 | 0.010 | 0.96 | 0.0 | 0.05 | 15.28 | 0.03 | 1.515 | 4.75 | 0.18 | 7.3 | 92.7 | 0.0 | -4.26 | 0.75 | 0.81 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 6N25 | 9323 | 2022-12-18 | 2018-11-12 | 2.7 | 3.35 | — | 3.2 | 0.008 | 0.85 | 0.0 | 0.05 | 9.28 | 0.01 | 2.307 | 2.34 | 0.00 | 2.1 | 97.9 | 0.0 | -6.12 | 0.77 | 0.88 | 4.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13940 | 1690 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 6CDi | 7460 | 2022-12-18 | 2018-02-08 | 3.6 | 3.90 | — | 3.6 | 0.007 | 0.90 | 0.0 | 0.10 | 9.66 | 0.01 | 1.461 | 7.90 | 0.45 | 5.9 | 94.0 | 0.1 | -3.25 | 0.84 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32763 | 3843 | 81 | 0 | 210 | 0 | 0 | logfile |
✘ | 6QEM | 4538 | 2022-12-19 | 2019-01-08 | 3.4 | 3.53 | — | 3.5 | 0.013 | 1.06 | 0.0 | 0.05 | 12.15 | 0.01 | 1.290 | 4.49 | 0.51 | 11.1 | 88.9 | 0.0 | -4.45 | 0.74 | 0.71 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65750 | 4104 | 24 | 26 | 16 | 0 | 32652 | logfile |
✘ | 3JD6 | 6425 | 2022-12-21 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 34.0 | 0.12 | 14.71 | 0.02 | 0.000 | 5.64 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.59 | 0.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45781 | 2839 | 17 | 0 | 0 | 0 | 22542 | logfile |
✘ | 6RKV | 4912 | 2022-12-18 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2022-12-19 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6D00 | 7782 | 2022-12-20 | 2018-04-09 | 4.0 | 3.65 | — | 3.0 | 0.001 | 0.45 | 0.0 | 0.04 | 9.42 | 0.00 | 2.284 | 4.03 | 0.05 | 6.5 | 92.8 | 0.7 | -4.95 | 0.62 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38328 | 4824 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6V6B | 21067 | 2022-12-18 | 2019-12-04 | 3.8 | 3.96 | — | 3.9 | 0.005 | 0.55 | 0.0 | 0.04 | 14.36 | 0.00 | 2.211 | 5.44 | 0.00 | 5.1 | 94.9 | 0.0 | -5.29 | 0.54 | 0.84 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9115 | 1111 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6EF0 | 9042 | 2022-12-18 | 2018-08-15 | 4.43 | 3.84 | — | 4.1 | 0.011 | 1.07 | 0.0 | 0.06 | 12.59 | 0.01 | 2.089 | 8.62 | 0.00 | 16.8 | 83.2 | 0.0 | -5.24 | 0.62 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24748 | 3318 | 20 | 0 | 6 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2022-12-19 | 2016-03-10 | 3.2 | 3.37 | — | 3.2 | 0.012 | 1.45 | 0.0 | 0.07 | 13.92 | 0.01 | 1.210 | 23.56 | 0.03 | 5.0 | 94.1 | 1.0 | -1.00 | 0.79 | 0.84 | 3.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✘ | 6B3Q | 7041 | 2022-12-18 | 2017-09-22 | 3.7 | 3.84 | 3.74 | 3.7 | 0.005 | 1.03 | 0.0 | 0.06 | 12.29 | 0.01 | 2.212 | 4.15 | 0.00 | 2.6 | 97.4 | 0.0 | -4.53 | 0.80 | 0.78 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15727 | 1929 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6N07 | 9312 | 2022-12-18 | 2018-11-06 | 3.6 | 3.73 | — | 3.7 | 0.007 | 0.77 | 0.0 | 0.05 | 9.00 | 0.01 | 2.330 | 5.07 | 0.06 | 2.3 | 97.7 | 0.0 | -3.72 | 0.78 | 0.86 | 3.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HWH | 0289 | 2022-12-20 | 2018-10-12 | 3.3 | 3.56 | — | 3.5 | 0.012 | 1.33 | 1.0 | 0.07 | 12.95 | 0.01 | 0.691 | 7.86 | 0.51 | 9.4 | 90.5 | 0.1 | -5.53 | 0.71 | 0.82 | 4.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40632 | 4916 | 40 | 0 | 420 | 0 | 0 | logfile |
✘ | 6PZA | 20530 | 2022-12-18 | 2019-07-31 | 3.74 | 3.92 | — | 3.9 | 0.008 | 1.06 | 0.0 | 0.06 | 10.72 | 0.01 | 2.252 | 3.56 | 0.00 | 8.0 | 92.0 | 0.0 | -4.29 | 0.51 | 0.50 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9659 | 1441 | 3 | 0 | 2 | 0 | 0 | logfile |
✘ | 5XNo | 6744 | 2022-12-18 | 2017-05-23 | 3.5 | 3.75 | — | 3.6 | 0.010 | 1.76 | 0.0 | 0.09 | 15.13 | 0.02 | 1.208 | 9.70 | 0.00 | 4.1 | 95.9 | 0.0 | -2.61 | 0.60 | 0.80 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 5WPV | 8883 | 2022-12-18 | 2017-08-07 | 3.59 | 3.68 | — | 3.7 | 0.006 | 0.90 | 0.0 | 0.05 | 10.97 | 0.01 | 2.329 | 2.80 | 0.18 | 3.7 | 96.3 | 0.0 | -4.61 | 0.62 | 0.81 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14889 | 1816 | 9 | 0 | 9 | 0 | 0 | logfile |
✘ | 6S3K | 10092 | 2022-12-18 | 2019-06-25 | 3.7 | 4.09 | 3.85 | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 15.38 | 0.01 | 2.276 | 5.98 | 0.62 | 10.7 | 89.3 | 0.0 | -4.54 | 0.57 | 0.75 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1146 | 4 | 0 | 6 | 0 | 0 | logfile |