Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6Jo6	9854	2022-12-21	2019-03-20	2.9	2.92	—	2.9	0.027	2.68	0.0	0.09	18.20	0.02	1.209	8.01	0.55	4.2	95.8	0.1	-2.50	0.79	0.85	4.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45099	3899	36	0	285	0	0	logfile
✘	5GW4	9540	2022-12-19	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.57	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	6oMB	20124	2022-12-18	2019-04-18	3.7	3.91	—	3.8	0.010	0.96	0.0	0.05	15.28	0.03	1.515	4.75	0.18	7.3	92.7	0.0	-4.26	0.75	0.81	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21815	2775	11	0	48	0	0	logfile
✘	6N25	9323	2022-12-18	2018-11-12	2.7	3.35	—	3.2	0.008	0.85	0.0	0.05	9.28	0.01	2.307	2.34	0.00	2.1	97.9	0.0	-6.12	0.77	0.88	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13940	1690	10	0	5	0	0	logfile
✘	6CDi	7460	2022-12-18	2018-02-08	3.6	3.90	—	3.6	0.007	0.90	0.0	0.10	9.66	0.01	1.461	7.90	0.45	5.9	94.0	0.1	-3.25	0.84	0.84	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32763	3843	81	0	210	0	0	logfile
✘	6QEM	4538	2022-12-19	2019-01-08	3.4	3.53	—	3.5	0.013	1.06	0.0	0.05	12.15	0.01	1.290	4.49	0.51	11.1	88.9	0.0	-4.45	0.74	0.71	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65750	4104	24	26	16	0	32652	logfile
✘	3JD6	6425	2022-12-21	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	34.0	0.12	14.71	0.02	0.000	5.64	0.00	13.3	86.1	0.6	-3.14	0.59	0.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45781	2839	17	0	0	0	22542	logfile
✘	6RKV	4912	2022-12-18	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✘	6RBE	4794	2022-12-19	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✘	6D00	7782	2022-12-20	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	4.03	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38328	4824	12	0	12	0	0	logfile
✘	6V6B	21067	2022-12-18	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.44	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9115	1111	2	0	0	0	0	logfile
✘	6EF0	9042	2022-12-18	2018-08-15	4.43	3.84	—	4.1	0.011	1.07	0.0	0.06	12.59	0.01	2.089	8.62	0.00	16.8	83.2	0.0	-5.24	0.62	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24748	3318	20	0	6	0	0	logfile
✘	3JCU	6617	2022-12-19	2016-03-10	3.2	3.37	—	3.2	0.012	1.45	0.0	0.07	13.92	0.01	1.210	23.56	0.03	5.0	94.1	1.0	-1.00	0.79	0.84	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✘	6B3Q	7041	2022-12-18	2017-09-22	3.7	3.84	3.74	3.7	0.005	1.03	0.0	0.06	12.29	0.01	2.212	4.15	0.00	2.6	97.4	0.0	-4.53	0.80	0.78	1.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15727	1929	4	0	0	0	0	logfile
✘	6N07	9312	2022-12-18	2018-11-06	3.6	3.73	—	3.7	0.007	0.77	0.0	0.05	9.00	0.01	2.330	5.07	0.06	2.3	97.7	0.0	-3.72	0.78	0.86	3.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✘	6HWH	0289	2022-12-20	2018-10-12	3.3	3.56	—	3.5	0.012	1.33	1.0	0.07	12.95	0.01	0.691	7.86	0.51	9.4	90.5	0.1	-5.53	0.71	0.82	4.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40632	4916	40	0	420	0	0	logfile
✘	6PZA	20530	2022-12-18	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	10.72	0.01	2.252	3.56	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9659	1441	3	0	2	0	0	logfile
✘	5XNo	6744	2022-12-18	2017-05-23	3.5	3.75	—	3.6	0.010	1.76	0.0	0.09	15.13	0.02	1.208	9.70	0.00	4.1	95.9	0.0	-2.61	0.60	0.80	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✘	5WPV	8883	2022-12-18	2017-08-07	3.59	3.68	—	3.7	0.006	0.90	0.0	0.05	10.97	0.01	2.329	2.80	0.18	3.7	96.3	0.0	-4.61	0.62	0.81	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14889	1816	9	0	9	0	0	logfile
✘	6S3K	10092	2022-12-18	2019-06-25	3.7	4.09	3.85	4.1	0.008	1.12	0.0	0.06	15.38	0.01	2.276	5.98	0.62	10.7	89.3	0.0	-4.54	0.57	0.75	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8902	1146	4	0	6	0	0	logfile

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