Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7KJW	22900	2022-07-03	2020-10-26	2.9	3.11	—	3.1	0.002	0.44	0.0	0.04	13.69	0.00	1.174	4.76	0.87	2.6	97.3	0.1	0.64	0.76	0.83	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8561	949	5	44	2	0	0	logfile
✘	7BVF	30218	2022-07-04	2020-04-10	2.97	3.41	3.02	3.3	0.007	0.93	6.0	0.06	13.41	0.01	1.285	6.43	0.12	12.7	87.1	0.2	-4.65	0.75	0.88	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16933	2221	5	0	5	0	0	logfile
✘	7BVC	30216	2022-07-04	2020-04-10	2.9	3.37	2.95	3.3	0.006	0.88	2.0	0.05	13.55	0.01	1.184	6.01	0.17	8.2	91.6	0.1	-4.30	0.68	0.85	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17206	2231	5	0	8	0	0	logfile
✘	6WR8	21880	2022-07-06	2020-04-29	3.53	3.69	—	3.5	0.009	0.89	0.0	0.05	20.31	0.01	1.175	56.50	7.88	8.0	91.4	0.6	-2.77	0.81	0.85	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31608	3688	10	124	5	0	0	logfile
✘	6PV6	20486	2022-07-04	2019-07-19	4.5	5.79	—	3.8	0.006	1.04	0.0	0.05	10.65	0.01	1.373	9.55	0.31	11.0	88.9	0.1	-4.72	0.60	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	6KQK	0753	2022-07-03	2019-08-18	2.17	3.14	—	2.8	0.018	1.16	12.0	0.06	14.67	0.00	1.260	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63373	3936	24	0	48	0	31225	logfile
✘	7JMH	22394	2022-07-04	2020-07-31	4.5	5.68	—	4.4	0.005	1.02	0.0	0.05	10.48	0.01	1.373	9.54	0.46	11.7	88.2	0.1	-4.60	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	6SL5	10236	2022-07-08	2019-08-18	2.84	2.97	2.83	3.0	0.026	2.95	9.0	0.13	20.95	0.02	1.187	20.83	0.73	7.3	92.0	0.7	-3.12	0.71	0.77	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43789	3744	36	0	292	0	0	logfile
✘	6KQJ	0752	2022-07-03	2019-08-18	2.54	3.61	—	3.1	0.018	1.15	0.0	0.06	14.36	0.00	1.260	8.79	0.00	7.3	92.7	0.0	-4.78	0.87	0.88	3.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63373	3936	24	0	48	0	31225	logfile
✘	6VY2	21456	2022-07-05	2020-02-25	4.86	6.05	—	5.2	0.006	0.91	0.0	0.07	14.28	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	2442	66	0	180	0	0	logfile
✘	6YAL	10760	2022-07-05	2020-03-12	3.0	3.10	—	3.1	0.022	2.09	46.0	0.12	14.75	0.02	0.805	12.14	2.62	10.0	86.1	3.9	-4.12	0.54	0.64	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90085	6322	42	1861	5	0	0	logfile
✘	6KQo	0754	2022-07-03	2019-08-18	2.52	3.75	—	3.2	0.019	1.15	0.0	0.07	14.44	0.00	1.259	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63373	3936	24	0	48	0	31225	logfile
✘	6KPH	0746	2022-07-03	2019-08-15	2.41	3.45	—	3.2	0.014	1.01	0.0	0.15	13.14	0.00	1.260	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62832	3936	24	0	48	0	31212	logfile
✘	6Uo9	20823	2022-07-03	2019-10-14	4.8	5.30	—	4.9	0.006	1.36	1.0	0.07	13.37	0.01	1.486	6.52	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9915	1365	9	0	14	0	0	logfile
✘	6Uo8	20822	2022-07-03	2019-10-14	3.63	3.97	—	3.8	0.004	0.73	0.0	0.05	13.39	0.01	1.484	4.07	0.00	7.8	92.2	0.0	-3.75	0.76	0.83	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10958	1385	7	0	15	0	0	logfile
✘	6PCR	20305	2022-07-04	2019-06-18	2.5	3.04	—	2.9	0.003	0.37	0.0	0.03	12.62	0.00	1.214	2.73	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72166	967	8	3015	1	0	0	logfile
✘	6KPJ	0748	2022-07-03	2019-08-15	2.56	3.82	—	3.3	0.014	0.91	0.0	0.06	12.13	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✘	7LFX	23308	2022-07-04	2021-01-19	3.1	2.80	—	3.0	0.004	0.58	0.0	0.04	13.12	0.00	1.240	9.95	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14846	1800	8	0	6	0	0	logfile
✘	7KGG	22869	2022-07-05	2020-10-16	2.97	2.88	—	2.9	0.006	0.90	3.0	0.05	14.03	0.01	1.353	4.66	1.09	1.0	99.0	0.0	2.20	0.71	0.81	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23677	3060	6	0	9	0	0	logfile
✘	6Z5S	11081	2022-07-05	2020-05-27	2.65	2.90	—	2.7	0.019	1.69	0.0	0.19	20.31	0.02	1.388	14.55	0.00	5.7	94.3	0.0	-1.19	0.89	0.88	3.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22794	2214	66	0	91	10	0	logfile

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