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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5XNM | 6742 | 2022-12-19 | 2017-05-23 | 3.2 | 3.28 | — | 3.3 | 0.011 | 1.67 | 0.0 | 0.08 | 16.06 | 0.02 | 1.205 | 9.94 | 0.03 | 2.3 | 97.7 | 0.0 | -2.60 | 0.71 | 0.82 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92842 | 8712 | 90 | 0 | 486 | 0 | 0 | logfile |
✔ | 6DRK | 8901 | 2022-12-18 | 2018-06-12 | 3.8 | 4.29 | — | 4.2 | 0.010 | 1.18 | 4.0 | 0.07 | 9.74 | 0.01 | 2.150 | 5.96 | 0.36 | 5.9 | 94.1 | 0.0 | -3.07 | 0.64 | 0.74 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33120 | 5060 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W9K | 8786 | 2022-12-18 | 2017-06-23 | 4.6 | 4.70 | 4.66 | 4.6 | 0.013 | 1.74 | 2.0 | 0.08 | 10.40 | 0.01 | 1.342 | 4.89 | 0.14 | 3.7 | 95.7 | 0.6 | 1.72 | 0.72 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32873 | 4244 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2022-12-19 | 2017-05-23 | 2.7 | 2.75 | — | 2.8 | 0.013 | 1.60 | 0.0 | 0.09 | 15.86 | 0.02 | 1.207 | 10.25 | 0.08 | 2.1 | 97.9 | 0.0 | -3.12 | 0.55 | 0.78 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✘ | 6oo5 | 20146 | 2022-12-18 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 9.23 | 0.01 | 2.246 | 3.36 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6AHR | 9626 | 2022-12-18 | 2018-08-20 | 3.92 | 4.05 | — | 3.9 | 0.004 | 0.96 | 0.0 | 0.05 | 12.84 | 0.01 | 1.742 | 9.89 | 0.13 | 10.2 | 89.6 | 0.3 | -4.23 | 0.71 | 0.61 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27851 | 2595 | 13 | 341 | 1 | 0 | 0 | logfile |
✘ | 5ooC | 3836 | 2022-12-18 | 2017-08-07 | 3.6 | 3.68 | 3.40 | 3.7 | 0.015 | 1.58 | 0.0 | 0.07 | 12.47 | 0.02 | 1.147 | 9.54 | 0.00 | 4.4 | 92.9 | 2.7 | -1.43 | 0.66 | 0.83 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14885 | 1855 | 10 | 0 | 15 | 0 | 0 | logfile |
✘ | 5ooD | 3837 | 2022-12-18 | 2017-08-07 | 3.7 | 3.73 | 3.79 | 3.7 | 0.016 | 1.62 | 0.0 | 0.07 | 12.61 | 0.02 | 1.149 | 8.01 | 0.00 | 5.5 | 92.0 | 2.5 | -1.71 | 0.63 | 0.81 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2022-12-19 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.014 | 1.26 | 0.0 | 0.06 | 17.96 | 0.02 | 1.769 | 31.85 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✘ | 6CNA | 7529 | 2022-12-18 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.006 | 0.91 | 0.0 | 0.05 | 10.19 | 0.01 | 2.021 | 26.65 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 6UiW | 20789 | 2022-12-18 | 2019-10-01 | 2.7 | 3.37 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.05 | 14.23 | 0.01 | 1.838 | 6.63 | 1.10 | 3.1 | 96.9 | 0.0 | -3.44 | 0.71 | 0.81 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23617 | 3234 | 22 | 0 | 11 | 0 | 0 | logfile |
✘ | 6KAF | 9957 | 2022-12-19 | 2019-06-22 | 3.73 | 3.95 | — | 3.7 | 0.014 | 1.69 | 0.0 | 0.10 | 16.92 | 0.01 | 1.212 | 7.91 | 0.62 | 10.0 | 90.0 | 0.1 | -3.68 | 0.78 | 0.73 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |
✘ | 6ADQ | 9610 | 2022-12-22 | 2018-08-01 | 3.5 | 3.66 | 3.51 | 3.6 | 0.018 | 1.74 | 0.0 | 0.07 | 16.83 | 0.03 | 1.170 | 9.77 | 0.51 | 9.8 | 90.1 | 0.1 | -4.62 | 0.67 | 0.81 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48946 | 6026 | 44 | 0 | 74 | 0 | 0 | logfile |
✘ | 5ZGB | 6929 | 2022-12-19 | 2018-03-08 | 3.63 | 3.79 | — | 3.7 | 0.012 | 1.47 | 0.0 | 0.07 | 18.52 | 0.02 | 1.175 | 15.16 | 0.43 | 12.9 | 86.8 | 0.3 | -5.22 | 0.73 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35011 | 3102 | 31 | 0 | 215 | 0 | 0 | logfile |
✘ | 6oMM | 20126 | 2022-12-18 | 2019-04-19 | 3.17 | 3.31 | — | 3.3 | 0.005 | 0.93 | 1.0 | 0.06 | 9.85 | 0.01 | 2.222 | 5.12 | 0.00 | 3.1 | 96.9 | 0.0 | -2.94 | 0.67 | 0.83 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9134 | 1142 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 6MZJ | 9303 | 2022-12-18 | 2018-11-05 | 4.8 | 5.06 | — | 4.4 | 0.014 | 1.50 | 0.0 | 0.08 | 8.01 | 0.00 | 2.352 | 1.32 | 2.65 | 3.2 | 96.6 | 0.1 | -0.18 | 0.70 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12653 | 2088 | 52 | 0 | 149 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2022-12-18 | 2015-07-10 | 4.8 | 3.82 | — | 4.6 | 0.020 | 3.41 | 3.0 | 0.25 | 21.78 | 0.08 | 2.651 | 30.77 | 25.00 | 24.0 | 72.0 | 4.0 | -6.05 | -0.01 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✘ | 6M1D | 30041 | 2022-12-18 | 2020-02-25 | 4.5 | 6.53 | — | 4.6 | 0.005 | 1.20 | 0.0 | 0.06 | 18.16 | 0.01 | 2.043 | 20.67 | 9.51 | 9.3 | 89.8 | 0.9 | -5.09 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21776 | 2706 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BK8 | 7109 | 2022-12-19 | 2017-11-07 | 3.3 | 3.39 | — | 3.3 | 0.009 | 1.23 | 7.0 | 0.10 | 13.57 | 0.01 | 1.020 | 4.74 | 1.27 | 6.3 | 93.2 | 0.5 | -3.63 | 0.65 | 0.75 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 82745 | 9975 | 53 | 433 | 249 | 0 | 0 | logfile |
✘ | 5Z58 | 6891 | 2022-12-19 | 2018-01-17 | 4.9 | 5.11 | — | 4.8 | 0.011 | 1.48 | 31.0 | 0.10 | 14.17 | 0.01 | 1.766 | 28.33 | 4.95 | 6.4 | 92.4 | 1.2 | -2.65 | 0.58 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94673 | 12915 | 51 | 390 | 12 | 0 | 0 | logfile |