Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5XNM	6742	2022-12-19	2017-05-23	3.2	3.28	—	3.3	0.011	1.67	0.0	0.08	16.06	0.02	1.205	9.94	0.03	2.3	97.7	0.0	-2.60	0.71	0.82	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✔	6DRK	8901	2022-12-18	2018-06-12	3.8	4.29	—	4.2	0.010	1.18	4.0	0.07	9.74	0.01	2.150	5.96	0.36	5.9	94.1	0.0	-3.07	0.64	0.74	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33120	5060	4	0	0	0	0	logfile
✔	5W9K	8786	2022-12-18	2017-06-23	4.6	4.70	4.66	4.6	0.013	1.74	2.0	0.08	10.40	0.01	1.342	4.89	0.14	3.7	95.7	0.6	1.72	0.72	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32873	4244	12	0	0	0	0	logfile
✘	5XNL	6741	2022-12-19	2017-05-23	2.7	2.75	—	2.8	0.013	1.60	0.0	0.09	15.86	0.02	1.207	10.25	0.08	2.1	97.9	0.0	-3.12	0.55	0.78	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✘	6oo5	20146	2022-12-18	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	9.23	0.01	2.246	3.36	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17548	2440	8	0	4	0	0	logfile
✘	6AHR	9626	2022-12-18	2018-08-20	3.92	4.05	—	3.9	0.004	0.96	0.0	0.05	12.84	0.01	1.742	9.89	0.13	10.2	89.6	0.3	-4.23	0.71	0.61	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27851	2595	13	341	1	0	0	logfile
✘	5ooC	3836	2022-12-18	2017-08-07	3.6	3.68	3.40	3.7	0.015	1.58	0.0	0.07	12.47	0.02	1.147	9.54	0.00	4.4	92.9	2.7	-1.43	0.66	0.83	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14885	1855	10	0	15	0	0	logfile
✘	5ooD	3837	2022-12-18	2017-08-07	3.7	3.73	3.79	3.7	0.016	1.62	0.0	0.07	12.61	0.02	1.149	8.01	0.00	5.5	92.0	2.5	-1.71	0.63	0.81	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14910	1855	10	0	20	0	0	logfile
✘	6SW9	10320	2022-12-19	2019-09-20	4.2	5.88	4.46	3.0	0.014	1.26	0.0	0.06	17.96	0.02	1.769	31.85	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70661	4508	47	1593	41	42	0	logfile
✘	6CNA	7529	2022-12-18	2018-03-07	4.6	5.89	—	5.8	0.006	0.91	0.0	0.05	10.19	0.01	2.021	26.65	0.00	9.7	90.1	0.3	-4.80	0.57	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	3160	14	0	22	0	0	logfile
✘	6UiW	20789	2022-12-18	2019-10-01	2.7	3.37	—	3.1	0.010	0.99	0.0	0.05	14.23	0.01	1.838	6.63	1.10	3.1	96.9	0.0	-3.44	0.71	0.81	4.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23617	3234	22	0	11	0	0	logfile
✘	6KAF	9957	2022-12-19	2019-06-22	3.73	3.95	—	3.7	0.014	1.69	0.0	0.10	16.92	0.01	1.212	7.91	0.62	10.0	90.0	0.1	-3.68	0.78	0.73	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104363	9607	104	0	552	0	0	logfile
✘	6ADQ	9610	2022-12-22	2018-08-01	3.5	3.66	3.51	3.6	0.018	1.74	0.0	0.07	16.83	0.03	1.170	9.77	0.51	9.8	90.1	0.1	-4.62	0.67	0.81	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48946	6026	44	0	74	0	0	logfile
✘	5ZGB	6929	2022-12-19	2018-03-08	3.63	3.79	—	3.7	0.012	1.47	0.0	0.07	18.52	0.02	1.175	15.16	0.43	12.9	86.8	0.3	-5.22	0.73	0.74	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35011	3102	31	0	215	0	0	logfile
✘	6oMM	20126	2022-12-18	2019-04-19	3.17	3.31	—	3.3	0.005	0.93	1.0	0.06	9.85	0.01	2.222	5.12	0.00	3.1	96.9	0.0	-2.94	0.67	0.83	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9134	1142	7	0	8	0	0	logfile
✘	6MZJ	9303	2022-12-18	2018-11-05	4.8	5.06	—	4.4	0.014	1.50	0.0	0.08	8.01	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12653	2088	52	0	149	0	0	logfile
✘	5A7U	3079	2022-12-18	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✘	6M1D	30041	2022-12-18	2020-02-25	4.5	6.53	—	4.6	0.005	1.20	0.0	0.06	18.16	0.01	2.043	20.67	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21776	2706	4	0	0	0	0	logfile
✘	6BK8	7109	2022-12-19	2017-11-07	3.3	3.39	—	3.3	0.009	1.23	7.0	0.10	13.57	0.01	1.020	4.74	1.27	6.3	93.2	0.5	-3.63	0.65	0.75	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	82745	9975	53	433	249	0	0	logfile
✘	5Z58	6891	2022-12-19	2018-01-17	4.9	5.11	—	4.8	0.011	1.48	31.0	0.10	14.17	0.01	1.766	28.33	4.95	6.4	92.4	1.2	-2.65	0.58	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94673	12915	51	390	12	0	0	logfile

• ← previous
• Page 4 of 443
• next →