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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7SY0 | 25512 | 2024-03-11 | 2021-11-24 | 3.0 | 3.75 | — | 3.5 | 0.005 | 0.84 | 0.0 | 0.06 | 13.35 | 0.01 | 2.295 | 2.42 | 0.00 | 1.4 | 98.6 | 0.0 | -0.49 | 0.80 | 0.83 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6553 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 8DJK | 27460 | 2024-03-11 | 2022-06-30 | 3.33 | 3.77 | 3.32 | 3.7 | 0.029 | 1.52 | 1.0 | 1.03 | 32.03 | 0.01 | 1.327 | 7.25 | 0.82 | 5.0 | 95.0 | 0.0 | -1.84 | 0.48 | 0.73 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7091 | 870 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 7VFV | 31960 | 2024-03-18 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19776 | 2383 | 8 | 0 | 40 | 0 | 0 | logfile |
✘ | 7SY3 | 25515 | 2024-03-20 | 2021-11-24 | 2.95 | 3.95 | — | 3.2 | 0.005 | 0.82 | 0.0 | 0.06 | 13.04 | 0.01 | 2.278 | 2.67 | 0.00 | 1.9 | 98.1 | 0.0 | -0.06 | 0.84 | 0.82 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27001 | 3321 | 26 | 0 | 62 | 0 | 0 | logfile |
✘ | 8DJM | 27461 | 2024-03-11 | 2022-07-01 | 3.23 | 3.66 | 3.31 | 3.6 | 0.029 | 1.53 | 2.0 | 1.04 | 32.65 | 0.00 | 1.844 | 8.23 | 0.82 | 3.7 | 96.3 | 0.0 | -2.26 | 0.49 | 0.75 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7032 | 862 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 7VBB | 31877 | 2024-03-22 | 2021-08-31 | 2.81 | 3.06 | — | 3.2 | 0.010 | 1.49 | 91.0 | 0.10 | 16.58 | 0.01 | 1.842 | 28.27 | 6.12 | 8.6 | 91.0 | 0.4 | -3.42 | 0.59 | 0.68 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33151 | 4049 | 20 | 47 | 6 | 0 | 0 | logfile |
✘ | 7LC6 | 23269 | 2024-03-18 | 2021-01-09 | 3.7 | 4.12 | 3.73 | 3.9 | 0.010 | 1.12 | 0.0 | 0.06 | 12.51 | 0.01 | 2.211 | 5.74 | 1.51 | 7.4 | 92.6 | 0.0 | -2.96 | 0.71 | 0.73 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21891 | 1440 | 7 | 0 | 3 | 4 | 11106 | logfile |
✘ | 7XE4 | 33154 | 2024-03-15 | 2022-03-29 | 3.4 | 3.88 | — | 3.8 | 0.006 | 0.86 | 0.0 | 0.04 | 15.21 | 0.01 | 2.199 | 8.78 | 0.45 | 10.0 | 89.6 | 0.4 | -2.45 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12529 | 1503 | 3 | 0 | 27 | 0 | 0 | logfile |
✘ | 7CUW | 30475 | 2024-03-14 | 2020-08-25 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9839 | 1199 | 6 | 0 | 9 | 0 | 0 | logfile |
✘ | 8CY7 | 27069 | 2024-03-11 | 2022-05-23 | 2.9 | 3.84 | 3.06 | 3.3 | 0.003 | 0.76 | 10.0 | 0.17 | 13.02 | 0.00 | 2.018 | 5.28 | 0.26 | 3.7 | 96.1 | 0.1 | 0.96 | 0.83 | 0.76 | 2.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54932 | 3513 | 21 | 0 | 74 | 0 | 26549 | logfile |
✘ | 7EWR | 31363 | 2024-03-23 | 2021-05-26 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25779 | 2516 | 6 | 0 | 0 | 0 | 6804 | logfile |
✘ | 7SXU | 25506 | 2024-03-19 | 2021-11-24 | 3.0 | 3.77 | — | 3.3 | 0.005 | 0.76 | 0.0 | 0.05 | 12.88 | 0.01 | 2.284 | 2.37 | 0.00 | 2.8 | 97.2 | 0.0 | -0.63 | 0.82 | 0.80 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25248 | 3120 | 24 | 0 | 60 | 0 | 0 | logfile |
✘ | 8APF | 15568 | 2024-03-16 | 2022-08-09 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 6YP7 | 10865 | 2024-03-16 | 2020-04-15 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✘ | 6YAC | 10746 | 2024-03-23 | 2020-03-12 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38469 | 3332 | 45 | 0 | 243 | 56 | 0 | logfile |
✘ | 7SPi | 24771 | 2024-03-11 | 2021-11-02 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8EoS | 28466 | 2024-03-19 | 2022-10-04 | 3.1 | 3.84 | 3.11 | 3.5 | 0.005 | 0.57 | 0.0 | 0.04 | 15.24 | 0.00 | 1.840 | 20.11 | 3.59 | 5.2 | 94.7 | 0.2 | -0.81 | 0.90 | 0.89 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25606 | 3069 | 11 | 87 | 5 | 0 | 0 | logfile |
✘ | 7VFU | 31959 | 2024-03-18 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19946 | 2409 | 9 | 0 | 41 | 0 | 0 | logfile |
✘ | 6PLS | 20374 | 2024-03-16 | 2019-07-01 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14610 | 1720 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 7WDB | 32436 | 2024-03-18 | 2021-12-21 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22400 | 2660 | 8 | 0 | 28 | 0 | 0 | logfile |