Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DP1	27628	2023-08-18	2022-07-14	3.46	4.08	3.46	3.5	0.014	1.85	9.0	0.12	14.13	0.02	2.519	0.08	1.61	4.4	95.0	0.6	-0.92	0.84	0.83	3.01	3.5	0.003	0.64	0.0	0.04	14.71	0.00	2.155	7.03	0.04	2.8	97.1	0.0	-0.06	1.26	0.85	0.86	2.32	25000	3045	33	0	95	0	0	logfile
✔	7KDL	22826	2023-08-17	2020-10-08	2.96	3.49	—	3.4	0.014	1.76	2.0	0.10	12.45	0.01	1.479	0.09	0.27	6.1	93.6	0.3	-0.99	0.78	0.78	3.84	3.4	0.004	0.65	0.0	0.04	14.54	0.00	2.092	7.03	1.68	3.6	96.4	0.0	0.06	1.22	0.79	0.83	3.26	22365	2875	18	0	59	0	0	logfile
✔	7LWW	23559	2023-08-17	2021-03-01	3.0	3.20	—	3.2	0.014	1.78	5.0	0.10	12.77	0.01	2.511	0.09	0.55	5.3	94.4	0.3	-0.82	0.75	0.84	3.87	3.2	0.004	0.63	0.0	0.04	15.05	0.00	2.161	5.91	1.81	3.2	96.8	0.0	0.52	1.24	0.79	0.87	3.11	23786	2982	18	0	50	0	0	logfile
✔	7LYo	23597	2023-08-17	2021-03-07	3.32	3.53	—	3.5	0.013	1.75	5.0	0.09	12.57	0.01	2.511	0.09	0.43	5.4	94.3	0.3	-0.89	0.78	0.83	3.84	3.5	0.004	0.63	0.0	0.04	14.44	0.00	2.180	6.41	0.27	3.6	96.4	0.1	0.36	0.66	0.81	0.87	2.95	23649	2982	6	0	40	0	0	logfile
✔	7LWo	23552	2023-08-17	2021-03-01	2.85	3.02	—	3.0	0.013	1.79	6.0	0.09	12.73	0.01	2.511	0.09	0.59	4.5	95.1	0.3	-0.78	0.72	0.80	3.55	3.0	0.003	0.57	0.0	0.04	15.17	0.00	2.097	4.46	1.45	2.6	97.2	0.1	0.75	0.61	0.68	0.83	3.19	23556	2980	9	0	36	0	0	logfile
✔	7TLA	25985	2023-08-17	2022-01-18	3.13	3.36	—	3.3	0.012	1.76	3.0	0.09	13.37	0.01	2.522	0.09	1.12	6.0	93.7	0.3	-1.09	0.58	0.61	4.05	3.3	0.007	0.68	0.0	0.05	14.83	0.00	2.073	7.18	0.23	4.4	95.6	0.0	-0.02	0.65	0.76	0.85	3.33	23052	2948	3	0	0	0	0	logfile
✔	7M7B	23709	2023-08-09	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.12	0.02	2.512	0.10	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	3.1	0.003	0.63	0.0	0.04	14.03	0.00	2.184	6.23	0.18	2.4	97.6	0.0	0.20	1.34	0.64	0.88	3.45	4898	635	4	0	2	0	0	logfile
✔	7N95	24250	2023-08-10	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	7QK5	14038	2023-08-11	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.63	0.0	0.05	18.16	0.01	2.237	3.82	1.88	3.9	96.1	0.0	-1.69	1.47	0.36	0.82	7.53	10485	666	18	0	36	0	5337	logfile
✔	7LWT	23556	2023-08-17	2021-03-01	3.19	3.41	—	3.4	0.014	1.78	1.0	0.10	12.67	0.01	2.527	0.11	0.90	5.1	94.6	0.3	-0.82	0.76	0.84	3.87	3.4	0.003	0.59	0.0	0.04	14.32	0.00	2.121	4.34	0.35	2.9	97.0	0.1	0.60	1.24	0.77	0.83	3.16	23759	2980	15	0	48	0	0	logfile
✔	7UAE	26422	2023-08-09	2022-03-12	2.6	2.71	2.62	2.3	0.012	1.76	2.0	0.10	12.76	0.02	2.282	0.11	0.00	3.9	96.1	0.0	-0.18	0.66	0.87	6.01	2.3	0.003	0.70	0.0	0.04	16.00	0.00	2.188	7.54	1.68	5.4	94.6	0.0	0.27	1.66	0.68	0.89	4.14	4513	535	7	0	18	0	0	logfile
✘	7KE9	22835	2023-08-17	2020-10-10	3.08	3.62	—	3.5	0.013	1.74	0.0	0.09	12.23	0.01	2.491	0.11	0.04	5.8	94.0	0.2	-0.81	0.80	0.80	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22365	2875	18	0	59	0	0	logfile
✔	7SK6	25174	2023-08-11	2021-10-19	4.0	4.42	—	4.1	0.018	1.92	2.0	0.11	13.16	0.01	2.462	0.11	0.76	4.2	94.0	1.8	0.35	0.52	0.52	—	4.1	0.003	0.58	0.0	0.04	14.77	0.00	2.131	14.34	0.19	4.2	95.8	0.0	0.54	1.46	0.64	0.71	—	9144	585	4	0	0	0	4462	logfile
✔	7KE8	22834	2023-08-18	2020-10-10	3.26	3.87	—	3.7	0.014	1.73	1.0	0.10	13.48	0.01	2.519	0.11	1.20	6.3	93.6	0.1	-0.97	0.81	0.81	3.16	3.7	0.004	0.63	0.0	0.04	14.52	0.00	2.156	7.54	0.19	4.1	95.9	0.0	-0.10	1.24	0.83	0.83	2.48	23994	2957	21	0	63	0	0	logfile
✘	7TLB	25986	2023-08-17	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.11	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22806	2916	3	0	0	0	0	logfile
✔	7TKM	25974	2023-08-16	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.004	0.82	0.0	0.00	5.62	0.00	2.105	12.83	0.00	9.6	90.0	0.3	-0.78	1.55	0.82	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKP	25977	2023-08-16	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.67	0.00	2.069	13.64	0.00	9.3	90.5	0.2	-0.09	0.76	0.78	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7TKo	25976	2023-08-16	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.004	0.84	0.0	0.00	5.80	0.00	2.139	12.52	0.00	10.1	89.6	0.2	-0.46	0.84	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7KDT	22829	2023-08-10	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.003	0.52	0.0	0.03	16.94	0.00	2.204	5.58	0.70	1.8	98.2	0.0	2.89	2.12	0.65	0.78	2.42	8064	505	2	0	0	0	4042	logfile
✔	7TJY	25946	2023-08-16	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.6	0.004	0.79	0.0	0.00	4.84	0.00	2.161	3.93	0.00	9.8	90.0	0.3	0.68	1.48	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile

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