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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Z12 | 14438 | 2023-02-22 | 2022-02-24 | 3.0 | 3.83 | — | 3.4 | 0.007 | 1.03 | 1.0 | 0.06 | 15.28 | 0.01 | 0.865 | 31.21 | 1.37 | 15.0 | 83.9 | 1.1 | -3.04 | 0.84 | 0.81 | 1.95 | 3.4 | 0.004 | 0.84 | 0.0 | 0.05 | 16.58 | 0.00 | 2.126 | 20.72 | 1.47 | 12.7 | 87.1 | 0.2 | -1.75 | 0.59 | 0.82 | 0.80 | 1.48 | 18352 | 2286 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2023-02-21 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 16.78 | 0.01 | 0.968 | 35.61 | 0.00 | 9.3 | 90.2 | 0.5 | -1.75 | 2.17 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2023-02-23 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 16.79 | 0.01 | 1.856 | 24.08 | 1.08 | 13.3 | 85.7 | 1.0 | -1.33 | 2.15 | 0.41 | 0.75 | 0.99 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 6TE9 | 10477 | 2023-02-25 | 2019-11-11 | 3.58 | 3.70 | — | 3.6 | 0.011 | 1.32 | 0.0 | 0.08 | 10.50 | 0.01 | 0.891 | 13.02 | 0.82 | 9.9 | 90.0 | 0.1 | -5.43 | 0.77 | 0.85 | 3.48 | 3.6 | 0.003 | 0.77 | 0.0 | 0.04 | 15.44 | 0.00 | 2.130 | 13.99 | 0.71 | 6.2 | 93.8 | 0.0 | -1.36 | 0.72 | 0.76 | 0.85 | 2.03 | 66906 | 8892 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-02-22 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.75 | 0.0 | 0.04 | 14.67 | 0.00 | 1.976 | 13.04 | 0.15 | 5.4 | 94.5 | 0.0 | -0.66 | 1.65 | 0.30 | 0.18 | 0.61 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 7LQW | 23490 | 2023-02-25 | 2021-02-15 | 4.47 | 7.28 | 4.96 | 4.6 | 0.002 | 0.77 | 1.0 | 0.05 | 13.42 | 0.00 | 0.911 | 5.63 | 0.12 | 4.6 | 95.4 | 0.1 | -1.27 | 0.78 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25332 | 3374 | 8 | 0 | 26 | 0 | 0 | logfile |
✔ | 7UGQ | 26496 | 2023-02-25 | 2022-03-25 | 3.4 | 3.41 | 3.34 | 3.4 | 0.006 | 0.99 | 4.0 | 0.09 | 15.20 | 0.01 | 0.915 | 6.99 | 7.30 | 7.3 | 92.7 | 0.0 | -4.58 | 0.75 | 0.79 | 2.03 | 3.4 | 0.004 | 0.68 | 0.0 | 0.05 | 15.42 | 0.00 | 2.133 | 13.20 | 0.64 | 7.5 | 92.5 | 0.0 | -2.49 | 1.02 | 0.79 | 0.85 | 1.82 | 26113 | 3138 | 60 | 0 | 134 | 0 | 0 | logfile |
✔ | 7MiD | 23847 | 2023-02-19 | 2021-04-16 | 3.56 | 4.10 | — | 3.9 | 0.010 | 1.02 | 0.0 | 0.06 | 20.24 | 0.01 | 0.918 | 14.61 | 5.73 | 8.6 | 91.3 | 0.1 | -1.30 | 0.76 | 0.66 | 0.22 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 20.05 | 0.00 | 2.148 | 11.09 | 0.11 | 5.9 | 94.1 | 0.0 | 0.00 | 1.89 | 0.81 | 0.81 | 0.91 | 9789 | 1080 | 11 | 57 | 6 | 0 | 0 | logfile |
✔ | 5LMN | 4073 | 2023-02-21 | 2016-08-01 | 3.55 | 3.68 | 3.61 | 3.6 | 0.007 | 1.42 | 35.0 | 0.12 | 20.67 | 0.01 | 0.925 | 19.85 | 21.59 | 10.4 | 86.7 | 2.8 | -2.30 | 0.79 | 0.88 | 1.35 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 17.13 | 0.00 | 1.859 | 19.78 | 0.87 | 7.4 | 92.2 | 0.3 | -1.09 | 1.56 | 0.77 | 0.84 | 1.29 | 54149 | 2623 | 27 | 1534 | 129 | 0 | 0 | logfile |
✔ | 7Z2A | 14459 | 2023-02-20 | 2022-02-26 | 4.3 | 4.49 | — | 4.3 | 0.012 | 1.59 | 2.0 | 0.09 | 14.60 | 0.01 | 0.925 | 8.38 | 0.48 | 2.8 | 97.0 | 0.2 | 0.00 | 0.80 | 0.62 | — | 4.2 | 0.003 | 0.58 | 0.0 | 0.04 | 14.26 | 0.00 | 1.831 | 54.36 | 0.00 | 3.8 | 96.1 | 0.1 | 0.72 | 1.80 | 0.90 | 0.80 | — | 12244 | 1201 | 5 | 0 | 4 | 0 | 2765 | logfile |
✔ | 7TE9 | 25843 | 2023-02-26 | 2022-01-04 | 3.92 | 4.91 | 3.93 | 3.8 | 0.006 | 1.06 | 0.0 | 0.06 | 15.48 | 0.01 | 0.928 | 8.64 | 1.21 | 9.8 | 89.6 | 0.6 | -4.42 | 0.81 | 0.75 | 0.65 | 3.8 | 0.003 | 0.81 | 0.0 | 0.04 | 15.72 | 0.00 | 2.083 | 16.23 | 0.10 | 10.0 | 89.6 | 0.3 | -1.72 | 0.66 | 0.84 | 0.83 | 0.67 | 28142 | 3601 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYY | 0552 | 2023-02-23 | 2019-02-12 | 3.0 | 2.29 | 2.98 | 3.1 | 0.007 | 0.90 | 0.0 | 0.05 | 10.08 | 0.01 | 0.952 | 5.97 | 0.05 | 5.9 | 94.1 | 0.0 | -5.40 | 0.70 | 0.66 | 3.17 | 3.1 | 0.004 | 0.69 | 0.0 | 0.04 | 16.20 | 0.00 | 1.955 | 10.08 | 2.19 | 4.6 | 95.4 | 0.0 | -0.51 | 1.37 | 0.76 | 0.74 | 2.52 | 19226 | 2894 | 16 | 0 | 13 | 0 | 0 | logfile |
✔ | 7SVW | 25455 | 2023-02-21 | 2021-11-19 | 3.69 | 3.57 | 3.59 | 3.5 | 0.012 | 1.46 | 9.0 | 0.07 | 20.23 | 0.02 | 0.955 | 14.70 | 2.78 | 4.0 | 95.8 | 0.3 | 0.11 | 0.78 | 0.72 | 2.09 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 21.79 | 0.00 | 2.076 | 7.70 | 0.08 | 3.8 | 96.2 | 0.0 | 1.29 | 1.56 | 0.82 | 0.80 | 1.80 | 15830 | 1484 | 12 | 190 | 2 | 0 | 0 | logfile |
✔ | 6W6H | 21555 | 2023-02-26 | 2020-03-16 | 3.3 | 3.65 | — | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 15.48 | 0.00 | 0.962 | 9.97 | 1.39 | 9.9 | 89.9 | 0.2 | -4.10 | 0.84 | 0.85 | 2.13 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.77 | 0.00 | 2.179 | 8.28 | 0.92 | 9.1 | 90.9 | 0.0 | -1.23 | 1.21 | 0.83 | 0.87 | 1.92 | 28427 | 3615 | 13 | 0 | 38 | 0 | 0 | logfile |
✔ | 7CQK | 30442 | 2023-02-18 | 2020-08-11 | 3.3 | 3.38 | — | 3.3 | 0.011 | 1.34 | 3.0 | 0.08 | 19.23 | 0.01 | 0.963 | 29.92 | 21.66 | 11.3 | 87.7 | 1.0 | -5.35 | 0.70 | 0.84 | 2.60 | 3.3 | 0.002 | 0.67 | 0.0 | 0.04 | 16.86 | 0.00 | 2.227 | 5.71 | 0.11 | 4.8 | 95.1 | 0.1 | -1.06 | 2.02 | 0.71 | 0.86 | 2.18 | 8859 | 1116 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UGo | 26492 | 2023-02-25 | 2022-03-25 | 4.1 | 4.21 | 4.03 | 4.2 | 0.003 | 0.56 | 0.0 | 0.25 | 12.72 | 0.00 | 0.965 | 8.04 | 0.15 | 5.9 | 94.1 | 0.0 | -3.57 | 0.77 | 0.82 | — | 4.2 | 0.004 | 0.66 | 0.0 | 0.04 | 13.26 | 0.01 | 2.168 | 10.32 | 0.00 | 7.6 | 92.4 | 0.0 | -2.07 | 1.26 | 0.77 | 0.83 | — | 25590 | 3138 | 44 | 0 | 87 | 0 | 0 | logfile |
✔ | 5LMV | 4083 | 2023-02-22 | 2016-08-01 | 4.9 | 6.86 | 6.64 | 6.7 | 0.008 | 1.34 | 34.0 | 0.11 | 20.14 | 0.01 | 0.977 | 14.22 | 15.18 | 9.6 | 87.9 | 2.5 | -1.98 | 0.70 | 0.58 | — | 6.7 | 0.004 | 0.78 | 0.0 | 0.04 | 17.42 | 0.01 | 1.879 | 35.96 | 0.04 | 8.0 | 91.5 | 0.5 | -1.87 | 2.22 | 0.78 | 0.77 | — | 59470 | 3124 | 30 | 1612 | 4 | 0 | 0 | logfile |
✔ | 7CQi | 30441 | 2023-02-18 | 2020-08-11 | 3.2 | 3.33 | — | 3.3 | 0.012 | 1.51 | 5.0 | 0.09 | 16.83 | 0.01 | 0.997 | 19.68 | 13.06 | 10.7 | 88.6 | 0.7 | -5.50 | 0.71 | 0.85 | 3.34 | 3.3 | 0.002 | 0.67 | 0.0 | 0.04 | 16.25 | 0.00 | 2.078 | 6.99 | 0.42 | 5.9 | 94.0 | 0.1 | -1.69 | 2.28 | 0.71 | 0.86 | 2.51 | 8881 | 1117 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7ADK | 11729 | 2023-02-23 | 2020-09-15 | 2.8 | 3.03 | 2.81 | 3.0 | 0.014 | 2.03 | 21.0 | 0.12 | 15.24 | 0.02 | 0.997 | 1.77 | 0.43 | 9.4 | 90.6 | 0.0 | -2.46 | 0.47 | 0.68 | 3.61 | 3.0 | 0.003 | 0.67 | 0.0 | 0.04 | 17.37 | 0.00 | 1.872 | 9.54 | 2.94 | 8.2 | 91.8 | 0.0 | -1.87 | 2.91 | 0.56 | 0.76 | 2.72 | 20869 | 1317 | 2 | 0 | 0 | 0 | 10260 | logfile |
✔ | 7S9U | 24937 | 2023-02-26 | 2021-09-21 | 3.2 | 3.94 | — | 3.1 | 0.011 | 0.96 | 0.0 | 0.06 | 18.26 | 0.01 | 1.016 | 12.03 | 1.90 | 15.2 | 84.3 | 0.4 | -5.38 | 0.66 | 0.63 | 2.37 | 3.1 | 0.007 | 0.70 | 0.0 | 0.04 | 17.45 | 0.01 | 2.035 | 10.21 | 0.69 | 8.8 | 91.1 | 0.1 | -2.35 | 0.41 | 0.89 | 0.90 | 2.02 | 68620 | 2090 | 19 | 2436 | 0 | 0 | 0 | logfile |