Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JC5	6535	2022-04-09	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.24	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	4.8	0.004	1.01	0.0	0.05	13.22	0.00	1.966	23.13	0.02	9.3	89.9	0.9	-1.49	1.56	0.83	0.78	—	40041	5039	11	0	0	0	0	logfile
✔	6S61	10101	2022-04-06	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✘	3JAJ	3037	2022-04-24	2015-06-16	3.75	3.82	3.77	3.8	0.013	1.90	339.0	0.13	23.43	0.02	0.312	55.51	20.83	14.7	79.8	5.5	-5.44	0.74	0.80	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	228197	12521	100	5958	193	0	0	logfile
✔	6TA3	10421	2022-04-04	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.56	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.008	1.20	1.0	0.05	17.85	0.01	1.307	33.95	0.00	3.2	96.8	0.0	-0.17	2.41	0.77	0.73	0.34	9491	1201	6	0	5	0	0	logfile
✔	7o3X	12711	2022-04-12	2021-04-03	3.9	4.85	4.22	6.5	0.017	1.96	0.0	0.11	18.05	0.01	0.321	15.91	1.39	1.6	97.8	0.6	2.94	0.58	0.46	-0.41	4.3	0.005	1.17	1.0	0.05	19.81	0.01	2.020	36.07	0.90	2.1	97.7	0.1	1.33	2.43	0.77	0.85	-0.11	148395	19290	105	0	15	0	0	logfile
✔	6T61	10381	2022-04-08	2019-10-17	3.7	3.68	—	3.6	0.006	0.93	0.0	0.05	15.61	0.01	0.321	8.35	0.00	8.1	91.9	0.0	-3.35	0.50	0.77	1.47	3.6	0.005	0.78	0.0	0.04	17.88	0.01	2.085	12.78	0.83	6.1	93.9	0.0	0.77	1.63	0.51	0.79	0.85	30978	3906	18	0	0	0	0	logfile
✘	6CFZ	7469	2022-04-16	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	11.03	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	204102	12937	170	0	0	0	102272	logfile
✔	5T2C	8345	2022-04-20	2016-08-23	3.6	3.78	—	3.5	0.008	0.99	3.0	0.05	17.40	0.01	0.326	27.16	0.62	9.3	89.7	1.1	-4.28	0.88	0.88	2.09	3.5	0.005	0.73	2.0	0.04	17.70	0.01	1.903	16.05	0.41	8.6	91.1	0.4	-2.09	1.66	0.87	0.85	1.83	217989	11605	81	5869	0	0	0	logfile
✔	3J7M	6000	2022-04-21	2014-07-18	3.8	3.16	—	3.9	0.014	1.63	0.0	0.11	11.98	0.01	0.337	30.57	1.61	12.4	85.4	2.2	-1.80	0.73	0.78	2.06	3.3	0.040	1.15	0.0	0.05	17.36	0.01	1.443	22.06	2.16	9.0	90.4	0.6	-2.31	1.58	0.71	0.78	1.70	217080	28680	180	0	0	0	0	logfile
✔	6GJ1	0009	2022-04-05	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.86	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.43	0.01	2.086	22.66	0.00	17.1	82.8	0.1	-3.73	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6FKH	4271	2022-04-09	2018-01-24	4.2	4.29	4.16	4.2	0.015	1.45	28.0	0.09	11.91	0.01	0.343	62.34	0.15	3.9	96.0	0.1	-0.16	0.63	0.67	—	4.2	0.004	0.79	0.0	0.04	13.72	0.01	1.890	19.09	0.07	4.1	95.8	0.1	-0.13	1.61	0.69	0.79	—	39231	5201	31	0	10	0	0	logfile
✔	5N61	3593	2022-04-09	2017-02-14	3.4	3.59	—	3.5	0.012	1.19	0.0	0.05	14.76	0.01	0.343	36.23	7.23	9.1	88.8	2.1	-4.08	0.72	0.65	2.60	3.5	0.004	0.76	0.0	0.04	16.32	0.01	1.826	15.18	0.30	5.9	93.8	0.2	-0.65	2.75	0.80	0.83	2.04	48547	5887	27	79	9	0	0	logfile
✔	6HD7	0202	2022-04-09	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	24.95	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.79	0.0	0.04	17.84	0.01	1.953	18.74	0.71	7.3	92.3	0.4	-1.37	1.56	0.76	0.87	1.70	141153	7514	52	3767	234	0	0	logfile
✔	6XZA	10656	2022-04-10	2020-02-03	2.66	4.00	—	3.8	0.007	0.68	1.0	0.04	14.27	0.02	0.349	6.68	2.91	3.1	96.4	0.4	-1.96	0.72	0.68	2.40	3.8	0.005	0.72	0.0	0.04	15.36	0.01	2.036	14.60	4.15	4.4	95.4	0.1	-0.42	1.14	0.70	0.84	1.94	143983	5732	54	4616	1	0	0	logfile
✔	6RDB	4812	2022-04-08	2019-04-12	2.8	2.89	2.82	2.9	0.008	1.00	0.0	0.06	14.82	0.01	0.351	8.68	1.23	4.1	95.8	0.1	-4.44	0.70	0.84	3.24	2.9	0.010	0.70	0.0	0.04	16.52	0.01	1.861	10.89	2.30	3.6	96.4	0.0	-0.15	0.52	0.70	0.86	2.97	33961	4506	31	0	10	40	0	logfile
✔	6SAG	10130	2022-04-04	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.63	0.0	0.04	15.40	0.01	2.054	3.11	1.17	3.1	96.9	0.0	1.56	0.73	0.60	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	6U5V	20657	2022-04-11	2019-08-28	2.8	3.91	—	3.3	0.010	1.17	30.0	0.07	11.53	0.01	0.354	15.08	1.41	4.7	95.0	0.4	-4.75	0.88	0.79	2.86	3.3	0.004	0.79	0.0	0.05	13.61	0.00	2.066	15.05	1.65	4.2	95.8	0.0	-0.37	1.24	0.89	0.83	2.28	169122	21774	24	0	12	0	0	logfile
✔	6YLH	10839	2022-04-13	2020-04-07	3.1	3.24	—	3.0	0.005	0.89	18.0	0.07	16.48	0.01	0.354	4.72	0.19	6.6	93.1	0.3	-3.30	0.80	0.75	3.04	3.0	0.005	0.65	0.0	0.04	16.50	0.00	1.793	7.92	0.54	7.0	93.0	0.1	-0.08	0.53	0.82	0.78	2.67	180897	15296	66	3310	8	0	0	logfile
✔	7o3W	12710	2022-04-08	2021-04-03	4.9	6.81	5.80	7.1	0.017	1.84	0.0	0.11	18.08	0.01	0.360	24.19	0.30	3.5	96.4	0.2	1.74	0.66	0.54	—	7.1	0.004	0.93	0.0	0.04	15.63	0.01	1.980	27.90	0.02	1.7	98.2	0.1	1.48	2.40	0.75	0.81	—	138390	17976	98	0	14	0	0	logfile
✔	6oLF	0599	2022-04-20	2019-04-16	3.9	3.94	3.87	3.9	0.013	1.14	4.0	0.05	16.71	0.01	0.370	8.22	1.26	12.5	87.2	0.4	-5.30	0.69	0.79	1.93	3.9	0.007	0.80	0.0	0.04	17.52	0.01	1.704	17.30	0.84	11.3	88.6	0.1	-3.10	0.66	0.69	0.79	1.13	215429	11451	102	5759	38	14	0	logfile

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