Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6H4N	0137	2023-08-30	2018-07-22	3.0	3.20	—	3.1	0.007	0.96	4.0	0.05	14.51	0.01	0.418	5.99	0.74	10.1	89.4	0.5	-4.18	0.86	0.87	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147282	6188	57	4636	0	0	0	logfile
✔	8SEX	40432	2023-08-16	2023-04-10	2.84	2.99	2.84	3.0	0.005	0.56	0.0	0.04	12.78	0.01	0.419	6.47	2.15	2.8	97.1	0.2	1.60	0.63	0.81	2.20	3.0	0.003	0.55	0.0	0.04	16.37	0.00	2.240	6.71	3.23	1.7	98.2	0.2	1.64	0.54	0.65	0.84	2.23	20568	2504	8	0	8	0	0	logfile
✔	7UEG	26474	2023-08-27	2022-03-21	4.0	4.46	4.14	4.2	0.034	0.79	6.0	0.05	12.16	0.01	0.436	24.88	0.00	8.9	90.9	0.2	-2.77	0.67	0.78	—	4.2	0.031	0.86	4.0	0.05	13.96	0.01	1.815	21.63	0.16	10.7	89.0	0.3	-2.70	0.57	0.68	0.82	—	49968	6480	36	0	0	0	0	logfile
✔	6FVW	4322	2023-08-10	2018-03-05	4.5	4.60	—	4.6	0.035	3.52	888.0	0.20	17.57	0.03	0.436	3.52	2.98	5.7	92.3	2.0	-2.29	0.50	0.54	—	4.5	0.004	0.85	0.0	0.05	14.95	0.00	1.867	19.38	0.03	5.0	94.8	0.2	-0.60	2.34	0.56	0.76	—	110594	14032	59	0	12	20	0	logfile
✔	8Bi4	16076	2023-08-28	2022-11-01	4.3	4.52	4.39	4.5	0.004	0.97	0.0	0.05	11.50	0.01	0.452	10.80	0.14	4.0	95.6	0.3	-0.49	0.64	0.81	—	4.5	0.006	0.86	0.0	0.05	13.52	0.01	2.057	10.58	0.04	5.4	94.6	0.0	-0.63	1.65	0.65	0.84	—	145200	19404	132	0	0	0	0	logfile
✘	7ZGK	14708	2023-08-13	2022-04-03	3.59	4.63	3.57	3.7	0.002	0.45	0.0	0.04	13.81	0.00	0.454	5.10	0.46	2.2	97.6	0.2	1.65	0.73	0.55	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13639	1723	3	0	0	0	0	logfile
✔	6i1X	0326	2023-08-10	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	7B70	12063	2023-08-14	2020-12-09	4.0	4.08	—	3.4	0.008	1.13	3.0	0.06	15.94	0.01	0.463	43.27	4.66	11.9	87.8	0.2	-2.44	0.79	0.66	—	3.0	0.005	0.90	0.0	0.05	16.52	0.01	2.081	35.37	0.75	8.5	91.4	0.0	-1.17	0.94	0.82	0.76	—	17084	2112	10	0	0	0	0	logfile
✔	7SSZ	25417	2023-08-14	2021-11-11	3.25	3.49	—	3.5	0.014	1.70	20.0	0.12	14.90	0.01	0.467	7.21	6.31	5.5	94.5	0.0	-2.29	0.56	0.79	3.16	3.5	0.003	0.62	0.0	0.04	15.33	0.00	2.207	6.13	0.12	3.9	96.1	0.0	1.04	1.35	0.70	0.83	3.32	15283	1908	9	0	3	0	0	logfile
✔	6XJA	22204	2023-08-14	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.12	18.04	0.01	0.468	73.73	18.43	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.006	0.92	0.0	0.05	16.57	0.01	2.021	31.92	1.09	10.6	89.2	0.2	-2.48	2.56	0.76	0.68	—	16441	2156	5	0	0	0	0	logfile
✔	5Y4o	6805	2023-08-12	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.003	0.77	0.0	0.04	17.56	0.00	2.042	14.00	0.45	7.0	92.5	0.5	-0.18	1.75	0.59	0.72	1.52	12341	1561	7	0	0	0	0	logfile
✔	5oA1	3727	2023-08-25	2017-06-20	4.4	5.36	—	4.5	0.027	1.76	1.0	0.07	19.15	0.01	0.473	26.25	8.67	5.4	93.4	1.2	-1.92	0.70	0.49	—	4.6	0.012	0.85	0.0	0.05	15.81	0.01	2.042	30.09	0.00	6.4	93.4	0.2	-0.18	3.30	0.78	0.66	—	43459	5668	39	105	7	0	0	logfile
✔	5M3F	4147	2023-08-22	2016-10-14	3.8	3.88	3.92	3.9	0.006	0.89	0.0	0.05	11.59	0.01	0.477	14.25	1.14	6.6	93.1	0.3	-3.19	0.59	0.74	2.61	3.9	0.003	0.67	0.0	0.04	16.04	0.00	2.073	9.22	0.24	3.6	96.4	0.0	-0.69	1.68	0.63	0.78	1.56	34032	4161	22	47	8	0	0	logfile
✔	7U5D	26348	2023-08-21	2022-03-02	3.52	3.22	3.45	3.4	0.013	1.65	1.0	0.09	14.82	0.01	0.483	10.61	0.20	3.2	96.7	0.2	-0.43	0.86	0.79	3.11	3.4	0.004	0.66	0.0	0.04	16.61	0.00	2.190	5.35	0.39	4.6	95.4	0.0	-0.13	0.75	0.89	0.86	2.78	31515	3603	13	141	0	0	0	logfile
✘	7L20	23121	2023-08-10	2020-12-15	3.15	3.39	—	3.4	0.007	0.87	0.0	0.05	16.21	0.01	0.505	10.97	0.84	7.3	92.2	0.5	-3.38	0.69	0.79	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	110234	9454	67	1583	171	0	0	logfile
✔	7URT	26718	2023-08-09	2022-04-22	2.39	2.51	2.52	2.5	0.008	0.96	0.0	0.07	14.02	0.01	0.512	6.62	1.60	0.9	99.1	0.0	1.22	0.71	0.82	4.21	2.5	0.036	3.37	11.0	0.30	17.01	0.01	0.291	9.27	1.09	1.7	98.2	0.1	1.92	1.13	0.69	0.81	2.58	107880	13260	60	0	120	0	0	logfile
✔	6SPG	10285	2023-08-25	2019-09-01	3.34	3.45	—	3.4	0.007	0.91	0.0	0.05	16.43	0.01	0.514	3.96	0.30	8.6	91.4	0.0	-5.03	0.84	0.81	2.64	3.4	0.005	0.72	0.0	0.04	17.07	0.01	1.832	9.45	0.61	8.9	91.1	0.0	-2.69	0.66	0.87	0.86	2.05	141963	5779	58	4526	172	0	0	logfile
✔	8CKW	16704	2023-08-13	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.003	0.62	0.0	0.04	17.24	0.00	2.211	11.20	0.27	1.1	98.9	0.0	1.42	1.20	0.58	0.85	1.95	13890	1785	15	0	0	0	0	logfile
✘	7RL5	24516	2023-08-18	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.05	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✔	5iYD	8138	2023-08-26	2016-03-24	3.9	3.83	—	3.9	0.011	1.73	8.0	0.08	17.24	0.01	0.526	22.15	3.28	8.5	87.8	3.8	-2.10	0.70	0.62	1.39	3.8	0.005	0.98	0.0	0.05	19.19	0.01	1.852	23.09	0.73	8.6	90.7	0.7	-1.08	1.15	0.79	0.80	1.05	46709	5407	31	166	13	0	0	logfile

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