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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JC5 | 6535 | 2022-04-09 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.24 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | 4.8 | 0.004 | 1.01 | 0.0 | 0.05 | 13.22 | 0.00 | 1.966 | 23.13 | 0.02 | 9.3 | 89.9 | 0.9 | -1.49 | 1.56 | 0.83 | 0.78 | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S61 | 10101 | 2022-04-06 | 2019-07-02 | 1.84 | 1.89 | 1.85 | 1.9 | 0.011 | 1.36 | 0.0 | 0.06 | 12.21 | 0.01 | 0.312 | 2.62 | 1.29 | 1.8 | 98.2 | 0.0 | 3.69 | 0.77 | 0.86 | 8.46 | 1.9 | 0.003 | 0.57 | 0.0 | 0.03 | 14.82 | 0.00 | 1.798 | 5.19 | 0.65 | 1.8 | 98.2 | 0.0 | 4.54 | 0.74 | 0.79 | 0.89 | 8.65 | 71060 | 4128 | 72 | 0 | 30 | 3854 | 32904 | logfile |
✘ | 3JAJ | 3037 | 2022-04-24 | 2015-06-16 | 3.75 | 3.82 | 3.77 | 3.8 | 0.013 | 1.90 | 339.0 | 0.13 | 23.43 | 0.02 | 0.312 | 55.51 | 20.83 | 14.7 | 79.8 | 5.5 | -5.44 | 0.74 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 228197 | 12521 | 100 | 5958 | 193 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2022-04-04 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.56 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.008 | 1.20 | 1.0 | 0.05 | 17.85 | 0.01 | 1.307 | 33.95 | 0.00 | 3.2 | 96.8 | 0.0 | -0.17 | 2.41 | 0.77 | 0.73 | 0.34 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7o3X | 12711 | 2022-04-12 | 2021-04-03 | 3.9 | 4.85 | 4.22 | 6.5 | 0.017 | 1.96 | 0.0 | 0.11 | 18.05 | 0.01 | 0.321 | 15.91 | 1.39 | 1.6 | 97.8 | 0.6 | 2.94 | 0.58 | 0.46 | -0.41 | 4.3 | 0.005 | 1.17 | 1.0 | 0.05 | 19.81 | 0.01 | 2.020 | 36.07 | 0.90 | 2.1 | 97.7 | 0.1 | 1.33 | 2.43 | 0.77 | 0.85 | -0.11 | 148395 | 19290 | 105 | 0 | 15 | 0 | 0 | logfile |
✔ | 6T61 | 10381 | 2022-04-08 | 2019-10-17 | 3.7 | 3.68 | — | 3.6 | 0.006 | 0.93 | 0.0 | 0.05 | 15.61 | 0.01 | 0.321 | 8.35 | 0.00 | 8.1 | 91.9 | 0.0 | -3.35 | 0.50 | 0.77 | 1.47 | 3.6 | 0.005 | 0.78 | 0.0 | 0.04 | 17.88 | 0.01 | 2.085 | 12.78 | 0.83 | 6.1 | 93.9 | 0.0 | 0.77 | 1.63 | 0.51 | 0.79 | 0.85 | 30978 | 3906 | 18 | 0 | 0 | 0 | 0 | logfile |
✘ | 6CFZ | 7469 | 2022-04-16 | 2018-02-19 | 4.5 | 4.66 | 5.81 | 4.7 | 0.010 | 1.19 | 0.0 | 0.05 | 9.79 | 0.01 | 0.321 | 11.03 | 0.00 | 6.6 | 92.9 | 0.4 | -0.45 | 0.25 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 204102 | 12937 | 170 | 0 | 0 | 0 | 102272 | logfile |
✔ | 5T2C | 8345 | 2022-04-20 | 2016-08-23 | 3.6 | 3.78 | — | 3.5 | 0.008 | 0.99 | 3.0 | 0.05 | 17.40 | 0.01 | 0.326 | 27.16 | 0.62 | 9.3 | 89.7 | 1.1 | -4.28 | 0.88 | 0.88 | 2.09 | 3.5 | 0.005 | 0.73 | 2.0 | 0.04 | 17.70 | 0.01 | 1.903 | 16.05 | 0.41 | 8.6 | 91.1 | 0.4 | -2.09 | 1.66 | 0.87 | 0.85 | 1.83 | 217989 | 11605 | 81 | 5869 | 0 | 0 | 0 | logfile |
✔ | 3J7M | 6000 | 2022-04-21 | 2014-07-18 | 3.8 | 3.16 | — | 3.9 | 0.014 | 1.63 | 0.0 | 0.11 | 11.98 | 0.01 | 0.337 | 30.57 | 1.61 | 12.4 | 85.4 | 2.2 | -1.80 | 0.73 | 0.78 | 2.06 | 3.3 | 0.040 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 1.443 | 22.06 | 2.16 | 9.0 | 90.4 | 0.6 | -2.31 | 1.58 | 0.71 | 0.78 | 1.70 | 217080 | 28680 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2022-04-05 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.86 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.43 | 0.01 | 2.086 | 22.66 | 0.00 | 17.1 | 82.8 | 0.1 | -3.73 | 1.19 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FKH | 4271 | 2022-04-09 | 2018-01-24 | 4.2 | 4.29 | 4.16 | 4.2 | 0.015 | 1.45 | 28.0 | 0.09 | 11.91 | 0.01 | 0.343 | 62.34 | 0.15 | 3.9 | 96.0 | 0.1 | -0.16 | 0.63 | 0.67 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.04 | 13.72 | 0.01 | 1.890 | 19.09 | 0.07 | 4.1 | 95.8 | 0.1 | -0.13 | 1.61 | 0.69 | 0.79 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 5N61 | 3593 | 2022-04-09 | 2017-02-14 | 3.4 | 3.59 | — | 3.5 | 0.012 | 1.19 | 0.0 | 0.05 | 14.76 | 0.01 | 0.343 | 36.23 | 7.23 | 9.1 | 88.8 | 2.1 | -4.08 | 0.72 | 0.65 | 2.60 | 3.5 | 0.004 | 0.76 | 0.0 | 0.04 | 16.32 | 0.01 | 1.826 | 15.18 | 0.30 | 5.9 | 93.8 | 0.2 | -0.65 | 2.75 | 0.80 | 0.83 | 2.04 | 48547 | 5887 | 27 | 79 | 9 | 0 | 0 | logfile |
✔ | 6HD7 | 0202 | 2022-04-09 | 2018-08-17 | 3.4 | 3.54 | — | 3.3 | 0.002 | 0.43 | 0.0 | 0.03 | 14.93 | 0.00 | 0.345 | 24.95 | 0.08 | 11.1 | 87.1 | 1.9 | -3.26 | 0.66 | 0.65 | 0.74 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 17.84 | 0.01 | 1.953 | 18.74 | 0.71 | 7.3 | 92.3 | 0.4 | -1.37 | 1.56 | 0.76 | 0.87 | 1.70 | 141153 | 7514 | 52 | 3767 | 234 | 0 | 0 | logfile |
✔ | 6XZA | 10656 | 2022-04-10 | 2020-02-03 | 2.66 | 4.00 | — | 3.8 | 0.007 | 0.68 | 1.0 | 0.04 | 14.27 | 0.02 | 0.349 | 6.68 | 2.91 | 3.1 | 96.4 | 0.4 | -1.96 | 0.72 | 0.68 | 2.40 | 3.8 | 0.005 | 0.72 | 0.0 | 0.04 | 15.36 | 0.01 | 2.036 | 14.60 | 4.15 | 4.4 | 95.4 | 0.1 | -0.42 | 1.14 | 0.70 | 0.84 | 1.94 | 143983 | 5732 | 54 | 4616 | 1 | 0 | 0 | logfile |
✔ | 6RDB | 4812 | 2022-04-08 | 2019-04-12 | 2.8 | 2.89 | 2.82 | 2.9 | 0.008 | 1.00 | 0.0 | 0.06 | 14.82 | 0.01 | 0.351 | 8.68 | 1.23 | 4.1 | 95.8 | 0.1 | -4.44 | 0.70 | 0.84 | 3.24 | 2.9 | 0.010 | 0.70 | 0.0 | 0.04 | 16.52 | 0.01 | 1.861 | 10.89 | 2.30 | 3.6 | 96.4 | 0.0 | -0.15 | 0.52 | 0.70 | 0.86 | 2.97 | 33961 | 4506 | 31 | 0 | 10 | 40 | 0 | logfile |
✔ | 6SAG | 10130 | 2022-04-04 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.63 | 0.0 | 0.04 | 15.40 | 0.01 | 2.054 | 3.11 | 1.17 | 3.1 | 96.9 | 0.0 | 1.56 | 0.73 | 0.60 | 0.89 | 6.90 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 6U5V | 20657 | 2022-04-11 | 2019-08-28 | 2.8 | 3.91 | — | 3.3 | 0.010 | 1.17 | 30.0 | 0.07 | 11.53 | 0.01 | 0.354 | 15.08 | 1.41 | 4.7 | 95.0 | 0.4 | -4.75 | 0.88 | 0.79 | 2.86 | 3.3 | 0.004 | 0.79 | 0.0 | 0.05 | 13.61 | 0.00 | 2.066 | 15.05 | 1.65 | 4.2 | 95.8 | 0.0 | -0.37 | 1.24 | 0.89 | 0.83 | 2.28 | 169122 | 21774 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 6YLH | 10839 | 2022-04-13 | 2020-04-07 | 3.1 | 3.24 | — | 3.0 | 0.005 | 0.89 | 18.0 | 0.07 | 16.48 | 0.01 | 0.354 | 4.72 | 0.19 | 6.6 | 93.1 | 0.3 | -3.30 | 0.80 | 0.75 | 3.04 | 3.0 | 0.005 | 0.65 | 0.0 | 0.04 | 16.50 | 0.00 | 1.793 | 7.92 | 0.54 | 7.0 | 93.0 | 0.1 | -0.08 | 0.53 | 0.82 | 0.78 | 2.67 | 180897 | 15296 | 66 | 3310 | 8 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2022-04-08 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.93 | 0.0 | 0.04 | 15.63 | 0.01 | 1.980 | 27.90 | 0.02 | 1.7 | 98.2 | 0.1 | 1.48 | 2.40 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✔ | 6oLF | 0599 | 2022-04-20 | 2019-04-16 | 3.9 | 3.94 | 3.87 | 3.9 | 0.013 | 1.14 | 4.0 | 0.05 | 16.71 | 0.01 | 0.370 | 8.22 | 1.26 | 12.5 | 87.2 | 0.4 | -5.30 | 0.69 | 0.79 | 1.93 | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 17.52 | 0.01 | 1.704 | 17.30 | 0.84 | 11.3 | 88.6 | 0.1 | -3.10 | 0.66 | 0.69 | 0.79 | 1.13 | 215429 | 11451 | 102 | 5759 | 38 | 14 | 0 | logfile |