Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Z12	14438	2023-02-22	2022-02-24	3.0	3.83	—	3.4	0.007	1.03	1.0	0.06	15.28	0.01	0.865	31.21	1.37	15.0	83.9	1.1	-3.04	0.84	0.81	1.95	3.4	0.004	0.84	0.0	0.05	16.58	0.00	2.126	20.72	1.47	12.7	87.1	0.2	-1.75	0.59	0.82	0.80	1.48	18352	2286	3	0	0	0	0	logfile
✔	5LMo	4074	2023-02-21	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.78	0.01	0.968	35.61	0.00	9.3	90.2	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	5FN1	3236	2023-02-23	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.08	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	6TE9	10477	2023-02-25	2019-11-11	3.58	3.70	—	3.6	0.011	1.32	0.0	0.08	10.50	0.01	0.891	13.02	0.82	9.9	90.0	0.1	-5.43	0.77	0.85	3.48	3.6	0.003	0.77	0.0	0.04	15.44	0.00	2.130	13.99	0.71	6.2	93.8	0.0	-1.36	0.72	0.76	0.85	2.03	66906	8892	42	0	0	0	0	logfile
✔	6Z5U	11082	2023-02-22	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.75	0.0	0.04	14.67	0.00	1.976	13.04	0.15	5.4	94.5	0.0	-0.66	1.65	0.30	0.18	0.61	17880	2334	14	0	4	0	0	logfile
✘	7LQW	23490	2023-02-25	2021-02-15	4.47	7.28	4.96	4.6	0.002	0.77	1.0	0.05	13.42	0.00	0.911	5.63	0.12	4.6	95.4	0.1	-1.27	0.78	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25332	3374	8	0	26	0	0	logfile
✔	7UGQ	26496	2023-02-25	2022-03-25	3.4	3.41	3.34	3.4	0.006	0.99	4.0	0.09	15.20	0.01	0.915	6.99	7.30	7.3	92.7	0.0	-4.58	0.75	0.79	2.03	3.4	0.004	0.68	0.0	0.05	15.42	0.00	2.133	13.20	0.64	7.5	92.5	0.0	-2.49	1.02	0.79	0.85	1.82	26113	3138	60	0	134	0	0	logfile
✔	7MiD	23847	2023-02-19	2021-04-16	3.56	4.10	—	3.9	0.010	1.02	0.0	0.06	20.24	0.01	0.918	14.61	5.73	8.6	91.3	0.1	-1.30	0.76	0.66	0.22	4.0	0.003	0.72	0.0	0.04	20.05	0.00	2.148	11.09	0.11	5.9	94.1	0.0	0.00	1.89	0.81	0.81	0.91	9789	1080	11	57	6	0	0	logfile
✔	5LMN	4073	2023-02-21	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.85	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.004	0.72	0.0	0.04	17.13	0.00	1.859	19.78	0.87	7.4	92.2	0.3	-1.09	1.56	0.77	0.84	1.29	54149	2623	27	1534	129	0	0	logfile
✔	7Z2A	14459	2023-02-20	2022-02-26	4.3	4.49	—	4.3	0.012	1.59	2.0	0.09	14.60	0.01	0.925	8.38	0.48	2.8	97.0	0.2	0.00	0.80	0.62	—	4.2	0.003	0.58	0.0	0.04	14.26	0.00	1.831	54.36	0.00	3.8	96.1	0.1	0.72	1.80	0.90	0.80	—	12244	1201	5	0	4	0	2765	logfile
✔	7TE9	25843	2023-02-26	2022-01-04	3.92	4.91	3.93	3.8	0.006	1.06	0.0	0.06	15.48	0.01	0.928	8.64	1.21	9.8	89.6	0.6	-4.42	0.81	0.75	0.65	3.8	0.003	0.81	0.0	0.04	15.72	0.00	2.083	16.23	0.10	10.0	89.6	0.3	-1.72	0.66	0.84	0.83	0.67	28142	3601	8	0	0	0	0	logfile
✔	6NYY	0552	2023-02-23	2019-02-12	3.0	2.29	2.98	3.1	0.007	0.90	0.0	0.05	10.08	0.01	0.952	5.97	0.05	5.9	94.1	0.0	-5.40	0.70	0.66	3.17	3.1	0.004	0.69	0.0	0.04	16.20	0.00	1.955	10.08	2.19	4.6	95.4	0.0	-0.51	1.37	0.76	0.74	2.52	19226	2894	16	0	13	0	0	logfile
✔	7SVW	25455	2023-02-21	2021-11-19	3.69	3.57	3.59	3.5	0.012	1.46	9.0	0.07	20.23	0.02	0.955	14.70	2.78	4.0	95.8	0.3	0.11	0.78	0.72	2.09	3.5	0.003	0.61	0.0	0.04	21.79	0.00	2.076	7.70	0.08	3.8	96.2	0.0	1.29	1.56	0.82	0.80	1.80	15830	1484	12	190	2	0	0	logfile
✔	6W6H	21555	2023-02-26	2020-03-16	3.3	3.65	—	3.5	0.004	0.77	0.0	0.04	15.48	0.00	0.962	9.97	1.39	9.9	89.9	0.2	-4.10	0.84	0.85	2.13	3.5	0.003	0.65	0.0	0.04	16.77	0.00	2.179	8.28	0.92	9.1	90.9	0.0	-1.23	1.21	0.83	0.87	1.92	28427	3615	13	0	38	0	0	logfile
✔	7CQK	30442	2023-02-18	2020-08-11	3.3	3.38	—	3.3	0.011	1.34	3.0	0.08	19.23	0.01	0.963	29.92	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	3.3	0.002	0.67	0.0	0.04	16.86	0.00	2.227	5.71	0.11	4.8	95.1	0.1	-1.06	2.02	0.71	0.86	2.18	8859	1116	7	0	2	0	0	logfile
✔	7UGo	26492	2023-02-25	2022-03-25	4.1	4.21	4.03	4.2	0.003	0.56	0.0	0.25	12.72	0.00	0.965	8.04	0.15	5.9	94.1	0.0	-3.57	0.77	0.82	—	4.2	0.004	0.66	0.0	0.04	13.26	0.01	2.168	10.32	0.00	7.6	92.4	0.0	-2.07	1.26	0.77	0.83	—	25590	3138	44	0	87	0	0	logfile
✔	5LMV	4083	2023-02-22	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.004	0.78	0.0	0.04	17.42	0.01	1.879	35.96	0.04	8.0	91.5	0.5	-1.87	2.22	0.78	0.77	—	59470	3124	30	1612	4	0	0	logfile
✔	7CQi	30441	2023-02-18	2020-08-11	3.2	3.33	—	3.3	0.012	1.51	5.0	0.09	16.83	0.01	0.997	19.68	13.06	10.7	88.6	0.7	-5.50	0.71	0.85	3.34	3.3	0.002	0.67	0.0	0.04	16.25	0.00	2.078	6.99	0.42	5.9	94.0	0.1	-1.69	2.28	0.71	0.86	2.51	8881	1117	6	0	2	0	0	logfile
✔	7ADK	11729	2023-02-23	2020-09-15	2.8	3.03	2.81	3.0	0.014	2.03	21.0	0.12	15.24	0.02	0.997	1.77	0.43	9.4	90.6	0.0	-2.46	0.47	0.68	3.61	3.0	0.003	0.67	0.0	0.04	17.37	0.00	1.872	9.54	2.94	8.2	91.8	0.0	-1.87	2.91	0.56	0.76	2.72	20869	1317	2	0	0	0	10260	logfile
✔	7S9U	24937	2023-02-26	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	18.26	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.007	0.70	0.0	0.04	17.45	0.01	2.035	10.21	0.69	8.8	91.1	0.1	-2.35	0.41	0.89	0.90	2.02	68620	2090	19	2436	0	0	0	logfile

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