Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DT3	27690	2022-11-29	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.64	0.0	0.04	14.39	0.00	2.125	10.81	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.64	0.0	0.04	16.10	0.00	2.103	12.68	0.00	8.0	92.0	0.0	-0.55	0.40	0.79	0.85	2.81	3821	485	4	0	3	0	0	logfile
✔	6LZ0	30020	2022-11-29	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.05	0.01	2.126	17.56	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.003	0.79	0.0	0.04	16.17	0.01	2.163	9.24	0.31	6.2	93.8	0.0	-0.24	1.27	0.41	0.67	1.61	4006	591	3	0	1	0	0	logfile
✔	7SoD	25267	2022-11-29	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.22	0.0	0.07	9.29	0.01	2.129	0.53	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.005	0.60	0.0	0.05	12.91	0.00	2.283	3.87	0.25	3.7	96.3	0.0	0.95	1.54	0.71	0.91	5.36	3830	473	5	0	7	0	0	logfile
✔	7B6E	12053	2022-11-29	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.98	0.0	0.05	14.71	0.00	2.119	24.18	0.00	10.9	89.1	0.0	-1.33	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile
✔	6XYQ	10652	2022-11-29	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4955	725	10	0	0	0	0	logfile
✔	6HU7	0273	2022-11-29	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.36	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4890	609	7	0	0	0	0	logfile
✔	7E39	30977	2022-11-29	2021-02-08	3.7	3.11	—	2.9	0.005	0.76	0.0	0.05	14.34	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.65	0.0	0.05	15.89	0.00	2.161	11.51	0.00	6.2	93.8	0.0	-2.43	0.42	0.50	0.74	2.23	3074	414	4	0	1	0	0	logfile
✔	6X2Z	22014	2022-11-29	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.67	0.0	0.04	16.19	0.00	2.185	9.85	0.85	3.1	96.9	0.0	0.73	0.96	0.43	0.86	2.16	3205	420	1	0	3	0	0	logfile
✔	6oUC	20202	2022-11-29	2019-05-04	2.8	3.00	—	3.0	0.008	1.15	1.0	0.08	9.03	0.01	2.131	6.96	0.00	3.5	96.5	0.0	-2.32	0.62	0.88	5.44	3.0	0.004	0.63	0.0	0.05	14.84	0.01	2.172	3.88	1.68	3.5	96.5	0.0	-0.43	1.18	0.64	0.90	3.76	3899	483	1	0	1	124	0	logfile
✔	7QEU	13941	2022-11-29	2021-12-03	2.7	3.39	—	3.0	0.009	0.68	0.0	0.04	13.62	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.003	0.59	0.0	0.04	15.00	0.00	2.243	3.99	1.24	2.3	97.7	0.0	3.28	0.49	0.78	0.87	2.55	3002	359	6	0	6	7	0	logfile
✔	7N9A	24253	2022-11-29	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.70	0.0	0.04	15.29	0.00	2.157	13.87	1.55	2.9	97.1	0.0	-1.08	0.56	0.73	0.70	2.14	2431	312	2	0	0	0	0	logfile
✔	7F63	31471	2022-11-29	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.003	0.79	0.0	0.05	15.84	0.00	2.142	15.49	0.54	10.0	89.5	0.5	-2.58	1.48	0.65	0.70	1.33	3375	429	3	0	0	0	0	logfile
✔	7CAH	30331	2022-11-29	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.97	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.79	0.0	0.05	15.10	0.01	2.223	15.25	1.11	13.1	86.9	0.0	-3.62	0.49	0.71	0.64	1.73	2889	404	3	0	0	0	0	logfile
✔	7QiG	13989	2022-11-29	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.003	0.64	0.0	0.05	17.69	0.00	2.142	6.24	0.87	10.0	90.0	0.0	-4.21	0.62	0.38	0.87	5.81	3213	396	3	0	0	0	0	logfile
✔	7KNU	22963	2022-11-29	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.64	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.70	0.0	0.04	16.16	0.00	2.174	14.14	0.00	4.0	96.0	0.0	-0.39	0.58	0.59	0.77	0.52	3809	467	3	0	0	0	0	logfile
✔	7EYA	31380	2022-11-29	2021-05-30	3.77	3.98	—	4.0	0.008	0.99	0.0	0.04	13.90	0.01	2.142	8.20	0.00	7.6	92.2	0.2	-2.30	0.60	0.77	2.21	4.0	0.003	0.64	0.0	0.04	16.17	0.01	2.170	9.53	0.60	7.0	92.8	0.2	-1.66	1.17	0.60	0.77	2.28	4629	576	5	0	3	0	0	logfile
✔	7BC6	12140	2022-11-29	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.003	0.63	0.0	0.04	15.29	0.00	2.201	7.85	0.23	4.2	95.8	0.0	0.39	0.28	0.55	0.82	2.09	4178	549	2	0	0	0	0	logfile
✔	7U0Z	26268	2022-11-29	2022-02-19	4.2	3.55	—	4.3	0.004	0.75	0.0	0.05	11.44	0.00	2.146	13.40	0.00	1.9	98.1	0.0	-2.57	0.41	0.71	—	4.3	0.002	0.65	0.0	0.05	12.19	0.00	2.255	10.24	0.00	4.0	96.0	0.0	-3.01	0.66	0.37	0.70	—	2487	330	3	0	0	0	0	logfile
✔	6Y97	10733	2022-11-29	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.16	0.00	2.048	14.34	0.00	6.7	93.3	0.0	0.68	0.90	0.71	0.71	—	4366	564	4	0	0	0	0	logfile
✘	7MLZ	23914	2022-11-29	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.34	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4864	624	4	0	5	0	0	logfile

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