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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PGP | 13391 | 2024-03-20 | 2021-08-15 | 3.1 | 3.32 | 3.11 | 3.2 | 0.005 | 0.48 | 0.0 | 0.04 | 11.53 | 0.00 | 1.908 | 4.63 | 0.81 | 1.8 | 98.2 | 0.0 | -1.55 | 0.71 | 0.80 | 2.56 | 3.2 | 0.003 | 0.53 | 0.0 | 0.03 | 14.18 | 0.00 | 1.839 | 4.35 | 1.69 | 3.5 | 96.4 | 0.1 | 1.35 | 1.63 | 0.76 | 0.85 | 1.86 | 28506 | 1788 | 2 | 0 | 0 | 0 | 14363 | logfile |
✔ | 7FES | 31562 | 2024-03-22 | 2021-07-21 | 3.4 | 3.53 | — | 4.2 | 0.011 | 1.21 | 5.0 | 0.10 | 15.70 | 0.01 | 1.102 | 14.90 | 2.30 | 17.7 | 80.8 | 1.5 | -5.10 | 0.70 | 0.79 | 1.36 | 3.4 | 0.004 | 0.77 | 5.0 | 0.09 | 17.33 | 0.00 | 2.053 | 13.84 | 2.97 | 13.4 | 86.5 | 0.2 | -2.92 | 2.43 | 0.71 | 0.81 | 1.40 | 33873 | 2198 | 14 | 0 | 0 | 0 | 17095 | logfile |
✔ | 6RVY | 10018 | 2024-03-14 | 2019-06-03 | 4.13 | 4.25 | 4.04 | 4.1 | 0.006 | 1.03 | 0.0 | 0.06 | 14.69 | 0.01 | 2.290 | 6.87 | 0.49 | 7.5 | 92.5 | 0.0 | -5.00 | 0.64 | 0.81 | — | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 13.31 | 0.00 | 2.315 | 11.22 | 0.00 | 4.8 | 95.2 | 0.0 | -0.06 | 0.69 | 0.64 | 0.81 | — | 9627 | 1290 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RWK | 10040 | 2024-03-18 | 2019-06-05 | 3.86 | 3.95 | 2.39 | 3.9 | 0.007 | 0.76 | 0.0 | 0.05 | 13.64 | 0.00 | 2.183 | 14.79 | 5.83 | 12.2 | 87.8 | 0.0 | -3.93 | 0.53 | 0.87 | 3.51 | 3.9 | 0.004 | 0.80 | 0.0 | 0.05 | 16.94 | 0.00 | 2.108 | 16.33 | 5.38 | 9.1 | 90.9 | 0.0 | -1.24 | 0.80 | 0.53 | 0.86 | 2.81 | 21760 | 2688 | 32 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RU6 | 24698 | 2024-03-10 | 2021-08-16 | 4.4 | 4.33 | 3.79 | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.25 | 0.00 | 2.027 | 10.32 | 0.00 | 0.3 | 99.7 | 0.0 | 3.15 | 0.71 | 0.67 | — | 4.2 | 0.003 | 0.52 | 0.0 | 0.03 | 12.86 | 0.00 | 2.107 | 6.63 | 0.00 | 1.6 | 98.4 | 0.0 | 3.90 | 0.73 | 0.74 | 0.70 | — | 5426 | 331 | 2 | 0 | 0 | 0 | 2725 | logfile |
✔ | 7N3o | 24142 | 2024-03-11 | 2021-06-01 | 3.8 | 4.01 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 23.64 | 0.00 | 2.285 | 8.30 | 1.35 | 3.6 | 96.4 | 0.0 | 1.09 | 0.71 | 0.66 | 1.57 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 23.96 | 0.00 | 2.162 | 17.01 | 2.70 | 3.6 | 96.4 | 0.0 | 0.96 | 0.84 | 0.75 | 0.74 | 1.92 | 8295 | 454 | 2 | 222 | 0 | 0 | 0 | logfile |
✔ | 6QNU | 4609 | 2024-03-11 | 2019-02-12 | 3.8 | 3.99 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.06 | 13.91 | 0.01 | 2.324 | 3.68 | 0.61 | 10.0 | 90.0 | 0.0 | -4.05 | 0.77 | 0.81 | 2.85 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 16.06 | 0.00 | 2.179 | 9.57 | 3.44 | 7.3 | 92.7 | 0.0 | -2.19 | 1.63 | 0.77 | 0.81 | 2.10 | 7250 | 920 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N3P | 24143 | 2024-03-14 | 2021-06-01 | 3.65 | 3.97 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 24.55 | 0.00 | 2.224 | 8.05 | 0.00 | 2.2 | 97.8 | 0.0 | 1.68 | 0.77 | 0.79 | 2.64 | 3.9 | 0.004 | 0.61 | 0.0 | 0.04 | 24.82 | 0.00 | 2.130 | 15.26 | 2.43 | 2.5 | 97.5 | 0.0 | 1.16 | 1.15 | 0.79 | 0.82 | 2.76 | 9055 | 454 | 4 | 259 | 0 | 0 | 0 | logfile |
✔ | 7VXM | 32184 | 2024-03-21 | 2021-11-12 | 3.6 | 3.96 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 7.69 | 0.00 | 2.159 | 7.97 | 0.00 | 3.9 | 95.9 | 0.2 | -2.41 | 0.49 | 0.54 | 0.82 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 14.37 | 0.00 | 1.526 | 13.41 | 1.87 | 3.1 | 96.9 | 0.0 | -0.01 | 1.67 | 0.58 | 0.73 | 1.19 | 29901 | 3791 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SPF | 10284 | 2024-03-18 | 2019-09-01 | 2.89 | 2.96 | — | 2.9 | 0.011 | 1.12 | 3.0 | 0.06 | 24.62 | 0.01 | 1.746 | 5.74 | 1.63 | 10.1 | 89.5 | 0.4 | -4.79 | 0.71 | 0.75 | 2.75 | 2.9 | 0.007 | 0.77 | 0.0 | 0.04 | 24.38 | 0.01 | 1.725 | 13.01 | 3.85 | 10.1 | 89.8 | 0.1 | -2.67 | 0.51 | 0.75 | 0.82 | 1.99 | 138296 | 5712 | 53 | 4392 | 0 | 0 | 0 | logfile |
✔ | 5H1R | 9571 | 2024-03-25 | 2016-10-11 | 3.6 | 4.23 | — | 4.2 | 0.014 | 1.36 | 0.0 | 0.07 | 13.16 | 0.01 | 1.968 | 31.49 | 0.94 | 12.9 | 85.7 | 1.4 | -6.24 | 0.54 | 0.74 | 1.84 | 4.2 | 0.005 | 0.94 | 0.0 | 0.05 | 17.56 | 0.01 | 2.100 | 16.95 | 7.58 | 11.3 | 88.1 | 0.6 | -1.18 | 1.00 | 0.58 | 0.77 | 1.09 | 47440 | 5760 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6iJZ | 9682 | 2024-03-15 | 2018-10-12 | 3.68 | 3.76 | — | 3.7 | 0.008 | 1.11 | 0.0 | 0.06 | 10.64 | 0.01 | 2.000 | 4.54 | 0.69 | 10.9 | 88.8 | 0.3 | -5.03 | 0.57 | 0.80 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10964 | 1366 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ADZ | 11734 | 2024-03-14 | 2020-09-17 | 2.5 | 2.56 | — | 2.5 | 0.015 | 1.54 | 0.0 | 0.09 | 11.19 | 0.01 | 1.343 | 4.44 | 0.08 | 2.0 | 98.0 | 0.0 | -0.11 | 0.64 | 0.85 | 4.72 | 2.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.34 | 0.00 | 2.240 | 3.01 | 1.99 | 2.9 | 97.1 | 0.0 | 0.48 | 0.65 | 0.66 | 0.88 | 4.16 | 67794 | 8508 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XSK | 33425 | 2024-03-15 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 24.66 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.69 | 0.0 | 0.04 | 25.95 | 0.01 | 1.746 | 31.76 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.93 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7UXE | 26858 | 2024-03-14 | 2022-05-05 | 3.38 | 3.63 | 3.46 | 3.9 | 0.005 | 0.86 | 0.0 | 0.04 | 19.49 | 0.01 | 2.026 | 14.38 | 2.00 | 14.2 | 85.8 | 0.0 | -2.79 | 0.58 | 0.77 | 1.31 | 3.9 | 0.005 | 0.76 | 0.0 | 0.04 | 18.64 | 0.00 | 2.193 | 10.19 | 3.70 | 14.4 | 85.6 | 0.0 | -0.15 | 0.75 | 0.56 | 0.77 | 1.61 | 9480 | 1150 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CYE | 30498 | 2024-03-11 | 2020-09-03 | 3.54 | 3.31 | — | 3.7 | 0.010 | 1.42 | 0.0 | 0.07 | 12.31 | 0.01 | 2.232 | 4.09 | 1.30 | 12.4 | 87.0 | 0.6 | -7.38 | 0.56 | 0.76 | 2.20 | 3.7 | 0.003 | 0.88 | 0.0 | 0.04 | 15.07 | 0.01 | 2.129 | 8.05 | 2.86 | 10.5 | 89.5 | 0.0 | -2.42 | 0.83 | 0.59 | 0.81 | 2.19 | 7263 | 978 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QD8 | 13910 | 2024-03-16 | 2021-11-26 | 3.6 | 3.90 | 3.66 | 3.8 | 0.004 | 0.74 | 0.0 | 0.05 | 14.49 | 0.00 | 2.273 | 5.28 | 0.00 | 2.3 | 97.7 | 0.0 | -1.83 | 0.74 | 0.69 | 1.54 | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 16.24 | 0.00 | 2.173 | 9.97 | 2.12 | 3.0 | 97.0 | 0.0 | 0.42 | 0.47 | 0.74 | 0.69 | 1.15 | 14086 | 1730 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2024-03-10 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 16.55 | 0.00 | 2.152 | 16.26 | 5.44 | 9.2 | 90.5 | 0.3 | -0.14 | 1.35 | 0.51 | 0.61 | 0.36 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPA | 14852 | 2024-03-14 | 2022-04-27 | 3.9 | 4.14 | 3.88 | 4.0 | 0.006 | 0.66 | 0.0 | 0.04 | 19.80 | 0.01 | 2.214 | 9.92 | 0.00 | 6.4 | 93.6 | 0.0 | -0.40 | 0.76 | 0.75 | 1.14 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 21.11 | 0.00 | 2.106 | 10.32 | 1.55 | 5.3 | 94.7 | 0.0 | -0.56 | 0.47 | 0.75 | 0.75 | 0.71 | 9121 | 874 | 4 | 95 | 0 | 0 | 0 | logfile |
✔ | 8CYJ | 27080 | 2024-03-15 | 2022-05-23 | 3.6 | 4.32 | 3.59 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 14.18 | 0.01 | 2.056 | 7.59 | 0.00 | 6.7 | 92.5 | 0.9 | -0.91 | 0.79 | 0.57 | 1.23 | 3.8 | 0.004 | 0.68 | 0.0 | 0.04 | 16.23 | 0.01 | 1.992 | 21.45 | 3.80 | 10.0 | 89.3 | 0.7 | -1.87 | 0.82 | 0.81 | 0.65 | 0.78 | 10575 | 701 | 5 | 0 | 0 | 0 | 5089 | logfile |