Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WVN	32854	2023-07-11	2022-02-10	3.4	2.96	—	3.5	0.006	0.83	0.0	0.05	8.23	0.01	2.348	1.91	0.11	3.7	96.2	0.1	-3.13	0.72	0.68	1.19	3.5	0.004	0.76	0.0	0.05	14.62	0.00	2.080	12.93	0.69	3.1	96.9	0.0	-0.23	1.22	0.79	0.78	1.62	24805	3162	3	0	0	0	0	logfile
✔	7LS5	23502	2023-07-17	2021-02-17	2.74	3.16	2.79	3.1	0.004	0.53	0.0	0.06	12.59	0.00	2.007	3.91	0.02	1.7	98.3	0.0	0.77	0.72	0.80	4.34	3.1	0.004	0.54	0.0	0.06	14.81	0.00	2.009	4.91	0.74	1.7	98.3	0.0	1.30	1.15	0.67	0.77	3.84	98042	6315	28	0	0	0	48895	logfile
✔	8HAJ	34592	2023-07-08	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.95	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.62	0.0	0.04	26.56	0.00	2.114	18.46	0.00	2.8	97.2	0.0	1.45	1.61	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	7Ui0	26521	2023-07-09	2022-03-28	3.4	3.51	3.43	3.6	0.008	0.81	0.0	0.05	13.94	0.01	2.052	14.18	0.00	5.3	94.7	0.0	-1.38	0.81	0.82	2.16	3.6	0.004	0.63	0.0	0.04	15.79	0.00	2.121	11.79	0.29	3.9	96.1	0.0	-0.88	1.35	0.83	0.86	2.68	19203	2415	9	0	0	0	0	logfile
✔	7WK9	32563	2023-07-14	2022-01-08	3.48	3.16	—	3.7	0.005	0.79	0.0	0.05	8.28	0.01	2.342	3.09	0.36	3.9	95.9	0.2	-2.70	0.70	0.65	0.52	3.7	0.004	0.77	0.0	0.05	14.13	0.00	2.049	14.26	0.66	3.7	96.3	0.0	-0.57	1.20	0.77	0.77	1.11	29745	3805	7	0	0	0	0	logfile
✔	7Z12	14438	2023-07-09	2022-02-24	3.0	3.83	—	3.4	0.007	1.03	1.0	0.06	15.28	0.01	0.865	31.24	1.37	15.0	83.9	1.1	-3.04	0.84	0.81	1.95	3.4	0.004	0.84	0.0	0.05	16.54	0.00	2.111	22.04	1.32	12.8	87.0	0.2	-1.76	0.58	0.83	0.83	1.54	18352	2286	3	0	0	0	0	logfile
✔	8DXP	27772	2023-07-08	2022-08-02	3.7	3.99	3.78	3.9	0.003	0.55	0.0	0.04	14.49	0.00	2.258	6.19	0.00	6.4	93.6	0.0	0.53	0.67	0.74	1.45	3.9	0.003	0.60	0.0	0.04	16.92	0.00	2.175	8.00	0.46	6.1	93.8	0.0	0.65	2.27	0.68	0.78	0.84	17465	2097	7	0	0	0	0	logfile
✔	7WTJ	32788	2023-07-03	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.0	0.005	0.75	0.0	0.05	14.22	0.00	2.204	11.35	0.00	14.6	85.4	0.0	-2.22	0.37	0.55	0.81	—	3261	424	3	0	0	0	0	logfile
✘	7SL7	25193	2023-07-09	2021-10-22	3.1	3.35	—	3.4	0.002	0.56	0.0	0.04	13.08	0.00	2.149	8.91	0.24	5.5	94.2	0.3	-0.86	0.77	0.82	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14732	1826	10	0	0	0	0	logfile
✔	7WVP	32856	2023-07-14	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.35	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.004	0.82	1.0	0.05	15.92	0.00	2.060	17.53	0.61	5.2	94.8	0.0	-1.57	1.54	0.75	0.67	0.41	29601	3750	4	0	0	0	0	logfile
✔	7EEQ	31080	2023-07-16	2021-03-19	3.96	3.15	—	3.0	0.006	0.98	0.0	0.06	10.42	0.01	2.316	4.10	0.17	12.0	88.0	0.0	-4.80	0.52	0.74	2.63	3.0	0.004	0.71	0.0	0.04	13.64	0.00	2.187	9.87	0.17	9.6	90.4	0.0	-3.21	1.16	0.53	0.76	2.86	34260	4488	24	0	0	0	0	logfile
✔	7WK2	32556	2023-07-11	2022-01-08	3.1	2.76	—	3.3	0.006	0.84	0.0	0.05	8.84	0.01	1.531	3.68	0.22	3.9	95.9	0.2	-3.00	0.72	0.68	1.17	3.3	0.005	0.79	0.0	0.05	14.91	0.00	2.124	12.06	0.76	4.0	96.0	0.0	-0.56	1.64	0.81	0.80	2.30	24879	3171	3	0	0	0	0	logfile
✔	8Go8	34173	2023-07-06	2022-08-24	3.41	3.65	3.44	3.6	0.004	0.61	0.0	0.04	12.95	0.00	2.253	5.19	0.00	2.7	97.3	0.0	1.03	0.74	0.81	2.28	3.7	0.004	0.58	0.0	0.04	14.79	0.00	2.156	7.55	0.25	3.9	96.1	0.0	0.63	0.62	0.76	0.84	2.72	11505	1520	8	0	0	0	0	logfile
✔	7UVL	26813	2023-07-08	2022-05-02	3.56	4.29	3.57	3.8	0.003	0.56	0.0	0.04	12.92	0.00	2.161	13.72	0.00	5.2	94.8	0.0	-0.68	0.90	0.82	1.57	3.8	0.005	0.67	0.0	0.04	14.80	0.00	2.044	18.46	0.22	7.1	92.9	0.0	-0.75	0.88	0.90	0.83	1.07	16508	2154	5	0	0	0	0	logfile
✔	8i1T	35121	2023-07-11	2023-01-13	2.8	2.69	2.76	2.7	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.7	0.002	0.55	0.0	0.04	15.55	0.00	2.181	7.49	1.30	2.5	97.3	0.2	-0.65	0.28	0.58	0.88	3.21	22939	3003	7	0	0	0	0	logfile
✔	8DXo	27771	2023-07-08	2022-08-02	3.6	3.87	3.62	3.8	0.002	0.53	0.0	0.04	14.80	0.00	2.195	4.89	0.00	6.5	93.5	0.0	0.37	0.68	0.75	1.60	3.8	0.003	0.57	0.0	0.04	16.91	0.00	2.189	6.73	0.52	6.6	93.4	0.0	0.86	1.20	0.68	0.79	1.28	17499	2101	7	0	0	0	0	logfile
✔	7WVo	32855	2023-07-11	2022-02-10	3.41	2.96	—	3.5	0.006	0.83	0.0	0.05	8.31	0.01	2.354	2.02	0.08	3.7	96.2	0.1	-3.17	0.72	0.68	0.86	3.5	0.003	0.75	0.0	0.05	14.52	0.00	2.128	11.26	0.31	2.7	97.3	0.0	-0.26	1.66	0.79	0.78	1.57	23188	2961	3	0	0	0	0	logfile
✔	7FGF	31579	2023-07-05	2021-07-26	2.8	2.93	—	3.0	0.006	0.77	0.0	0.05	14.36	0.01	2.295	8.04	0.00	6.9	93.1	0.0	-1.60	0.68	0.86	4.69	3.0	0.003	0.58	0.0	0.04	17.26	0.00	2.206	9.19	1.36	6.0	94.0	0.0	-1.14	0.41	0.71	0.87	4.04	10143	1296	3	0	0	0	0	logfile
✔	6PPD	20433	2023-07-10	2019-07-06	3.7	3.60	3.55	3.6	0.008	1.10	1.0	0.06	10.72	0.01	2.203	4.79	0.64	5.4	94.4	0.2	-4.49	0.48	0.79	2.40	3.6	0.004	0.72	0.0	0.04	15.94	0.00	2.084	10.22	0.40	4.9	95.0	0.0	-1.64	2.47	0.50	0.82	2.02	68769	8728	16	0	0	0	0	logfile
✔	6X0V	21985	2023-07-03	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile

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