Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YEW	10796	2022-04-08	2020-03-25	3.2	3.44	—	3.1	0.011	0.90	0.0	0.05	15.02	0.00	1.989	13.98	2.83	7.4	92.4	0.2	-3.04	0.85	0.81	2.02	3.1	0.004	0.67	0.0	0.04	15.86	0.00	2.091	11.97	0.29	5.3	94.7	0.0	0.52	1.27	0.86	0.86	1.69	88700	11425	5	0	0	0	0	logfile
✔	6XJX	22216	2022-04-05	2020-06-24	4.6	4.25	—	4.1	0.009	1.20	0.0	0.06	12.14	0.01	1.876	8.05	0.39	6.4	93.6	0.0	-3.41	0.67	0.80	—	4.1	0.003	0.70	0.0	0.04	13.64	0.00	2.141	12.88	0.00	3.9	96.1	0.0	0.94	1.93	0.67	0.80	—	12077	1462	10	0	0	0	0	logfile
✔	6ZGG	11205	2022-04-07	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.79	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.004	0.68	0.0	0.04	11.53	0.00	2.149	9.56	0.11	4.9	95.1	0.0	-0.82	1.78	0.87	0.82	1.18	25096	3207	3	0	0	0	0	logfile
✔	6YTV	10924	2022-04-06	2020-04-24	4.39	3.96	4.35	3.9	0.004	0.78	0.0	0.04	14.56	0.00	2.183	16.16	0.00	6.0	93.5	0.4	-2.08	0.58	0.76	—	3.9	0.003	0.76	0.0	0.04	14.57	0.00	2.199	12.04	0.00	7.0	92.7	0.2	0.08	1.55	0.56	0.73	—	19560	2520	10	0	0	0	0	logfile
✔	6TFJ	10492	2022-04-09	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.76	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.003	0.56	0.0	0.04	14.94	0.00	1.962	9.16	1.53	7.1	92.9	0.1	-0.73	1.31	0.70	0.75	2.11	48340	3058	4	0	0	0	24098	logfile
✔	6Wi9	21683	2022-04-04	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.37	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.004	0.73	0.0	0.04	13.93	0.00	2.087	14.09	0.00	6.6	93.4	0.0	-0.58	0.80	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	7BTo	30180	2022-04-06	2020-04-02	3.97	4.13	—	4.0	0.005	1.11	0.0	0.06	11.73	0.01	1.372	7.27	0.35	13.6	86.4	0.0	-4.82	0.84	0.75	1.40	4.0	0.004	0.83	0.0	0.05	14.68	0.01	2.002	14.76	0.56	11.3	88.7	0.0	-2.43	0.90	0.85	0.78	1.39	21283	2644	9	0	0	0	0	logfile
✔	6TE9	10477	2022-04-06	2019-11-11	3.58	3.70	—	3.6	0.011	1.32	0.0	0.08	10.50	0.01	0.891	12.97	0.82	9.9	90.0	0.1	-5.43	0.77	0.85	3.48	3.6	0.003	0.79	0.0	0.04	15.63	0.01	2.175	13.86	0.86	6.2	93.8	0.0	-1.33	0.73	0.77	0.85	2.07	66906	8892	42	0	0	0	0	logfile
✔	6WZG	21972	2022-04-04	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.57	0.0	0.04	16.28	0.00	2.162	5.95	1.76	1.8	98.2	0.0	1.69	0.99	0.74	0.86	4.86	8939	1165	6	0	0	0	0	logfile
✔	6UUS	20901	2022-04-04	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.30	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✔	6U68	20662	2022-04-05	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.002	0.74	0.0	0.05	4.16	0.00	2.318	2.42	0.00	3.8	96.2	0.0	-0.64	1.80	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	6VW2	21410	2022-04-04	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	6WQK	21871	2022-04-04	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	0.47	0.47	0.86	5.39	2070	285	5	0	0	0	0	logfile
✔	6YTo	10920	2022-04-09	2020-04-24	4.24	4.32	4.19	4.3	0.005	0.70	0.0	0.04	13.41	0.00	2.282	10.16	0.00	1.9	98.1	0.0	-0.08	0.67	0.83	—	4.3	0.003	0.63	0.0	0.04	13.55	0.00	2.010	9.02	0.06	2.6	97.4	0.0	2.79	0.73	0.67	0.82	—	41620	5340	20	0	0	0	0	logfile
✔	6LMV	0921	2022-04-06	2019-12-26	3.6	3.70	3.54	3.7	0.009	1.00	0.0	0.05	14.13	0.01	2.342	3.51	0.94	6.2	93.8	0.0	-5.49	0.62	0.78	2.30	3.6	0.003	0.61	0.0	0.04	16.84	0.01	2.203	6.61	0.37	3.8	96.2	0.0	2.97	3.02	0.68	0.80	1.82	17766	2223	9	0	0	0	0	logfile
✔	6LRQ	0958	2022-04-04	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	4.1	0.006	0.85	0.0	0.05	14.46	0.00	2.147	19.93	0.74	12.8	87.2	0.0	-3.04	1.58	0.46	0.71	1.16	2628	378	6	0	0	0	0	logfile
✔	6UVA	20906	2022-04-04	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.61	0.0	0.04	18.40	0.00	2.158	8.08	3.55	4.4	95.6	0.0	0.30	1.31	0.66	0.78	2.82	9561	1199	7	0	0	0	0	logfile
✔	6T7A	10391	2022-04-05	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.75	0.0	0.04	26.72	0.00	2.144	15.79	0.47	1.9	98.1	0.0	2.15	1.75	0.87	0.85	1.33	10338	847	11	190	0	0	0	logfile
✔	6YRK	10890	2022-04-07	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.64	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.004	0.77	0.0	0.04	13.95	0.01	2.108	25.30	0.00	7.1	92.7	0.1	-1.38	1.88	0.85	0.69	—	15058	1937	2	0	0	0	0	logfile
✔	6V9Y	21130	2022-04-06	2019-12-16	3.6	4.03	3.78	3.9	0.009	1.18	0.0	0.06	14.21	0.01	2.262	6.50	2.13	5.6	94.4	0.0	-5.18	0.74	0.82	1.38	3.9	0.004	0.86	0.0	0.04	16.04	0.00	2.122	14.57	0.59	5.1	94.9	0.0	-0.03	0.74	0.72	0.81	0.92	17716	2248	4	0	0	0	0	logfile

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