Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N9B	24255	2023-02-25	2021-06-17	3.8	3.45	—	3.5	0.013	1.41	3.0	0.10	13.97	0.01	2.070	14.41	0.07	3.1	96.9	0.0	-0.41	0.70	0.83	2.26	3.5	0.002	0.59	0.0	0.04	15.44	0.00	2.194	9.47	0.15	3.5	96.5	0.0	-0.18	0.45	0.69	0.79	2.28	24575	3197	5	0	0	0	0	logfile
✔	7UKJ	26582	2023-02-21	2022-04-01	3.6	4.01	—	3.7	0.003	0.61	0.0	0.05	14.53	0.00	2.183	12.99	1.78	12.8	87.2	0.0	-2.80	0.74	0.85	2.36	3.7	0.002	0.56	0.0	0.05	15.21	0.00	2.241	11.45	1.97	10.7	89.3	0.0	-2.65	1.14	0.73	0.84	2.12	14196	1862	3	0	0	0	0	logfile
✔	7BC5	12139	2023-02-16	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✔	7Wo9	32643	2023-02-20	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.002	0.51	0.0	0.04	16.20	0.00	2.164	5.55	1.21	4.7	95.3	0.0	1.88	0.74	0.72	0.81	1.85	12743	1581	1	0	0	0	0	logfile
✔	7VAK	31845	2023-02-27	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.26	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	6FU8	4319	2023-02-16	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7M3N	23658	2023-02-17	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.002	0.55	0.0	0.04	16.96	0.00	2.273	6.81	2.75	3.7	96.3	0.0	-0.46	0.48	0.45	0.84	4.74	6004	759	3	0	0	0	0	logfile
✔	6X0L	21978	2023-02-18	2020-05-16	3.9	3.69	—	3.6	0.005	0.85	0.0	0.05	18.72	0.00	2.067	21.30	0.13	5.0	95.0	0.0	-1.57	0.59	0.67	1.05	3.6	0.003	0.79	0.0	0.04	20.33	0.00	2.158	18.68	0.13	4.6	95.4	0.0	0.04	0.70	0.60	0.68	1.11	8037	894	7	40	0	0	0	logfile
✔	7oKN	12962	2023-02-26	2021-05-18	3.34	3.57	—	3.5	0.006	0.92	0.0	0.04	17.96	0.00	1.898	13.52	1.03	9.3	90.7	0.0	-2.82	0.61	0.66	1.09	3.5	0.008	0.80	0.0	0.05	17.87	0.00	2.129	13.57	0.89	8.2	91.8	0.0	-1.62	2.57	0.74	0.85	2.58	28067	3757	34	0	0	0	0	logfile
✔	6RD6	4807	2023-02-18	2019-04-12	2.75	2.89	2.74	2.8	0.006	0.82	0.0	0.05	13.67	0.01	2.306	4.49	0.38	2.5	97.5	0.0	-3.09	0.62	0.85	3.36	2.8	0.003	0.54	0.0	0.04	15.45	0.00	2.193	6.28	1.14	2.0	98.0	0.0	2.41	1.14	0.61	0.86	3.23	7758	1035	10	0	0	32	0	logfile
✔	8B0i	15784	2023-02-22	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	22.56	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.59	0.0	0.04	20.65	0.00	1.974	14.00	0.00	5.1	94.9	0.0	0.38	1.42	0.80	0.74	—	17636	1075	5	103	0	0	7831	logfile
✔	6ZiQ	11228	2023-02-24	2020-06-26	4.33	3.58	4.02	3.4	0.005	0.74	0.0	0.08	14.69	0.00	1.911	19.90	0.00	8.6	91.4	0.0	-1.50	0.48	0.72	—	3.4	0.003	0.61	0.0	0.08	14.71	0.00	1.943	12.69	0.08	5.5	94.5	0.0	0.57	0.60	0.47	0.72	—	22255	1385	15	0	0	0	11316	logfile
✔	6X6K	22076	2023-02-23	2020-05-28	3.1	3.22	—	3.2	0.011	1.23	2.0	0.07	13.77	0.01	2.210	8.21	0.00	5.5	94.5	0.0	-1.94	0.69	0.84	2.88	3.2	0.004	0.69	0.0	0.05	16.58	0.00	2.126	16.02	0.31	5.4	94.6	0.0	-0.16	0.63	0.70	0.85	2.39	60970	7602	42	0	0	0	0	logfile
✔	6WZ5	21970	2023-02-20	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.62	0.0	0.04	29.31	0.00	2.156	6.07	1.08	1.7	98.3	0.0	2.65	0.90	0.87	0.89	3.95	12443	774	10	306	0	0	0	logfile
✔	5MS1	3562	2023-02-17	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.42	0.00	2.162	9.67	0.00	2.9	97.1	0.0	-0.77	1.54	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	6oEE	20020	2023-02-26	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile
✔	7Z4W	14509	2023-02-22	2022-03-05	2.7	2.53	—	2.5	0.006	0.89	2.0	0.06	14.33	0.01	2.223	2.01	0.16	3.7	96.2	0.1	-1.99	0.74	0.84	4.49	2.5	0.002	0.56	0.0	0.04	16.68	0.00	2.159	3.71	1.06	3.4	96.6	0.0	1.17	0.83	0.74	0.86	3.88	58942	7242	60	0	0	406	0	logfile
✔	6HS7	0264	2023-02-21	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.72	0.0	0.04	14.05	0.00	2.131	10.58	0.07	7.9	92.1	0.0	-2.30	0.94	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✔	6oU9	20198	2023-02-20	2019-05-04	3.2	3.62	—	3.6	0.006	0.75	0.0	0.05	12.96	0.01	2.067	4.93	0.00	4.3	95.7	0.0	-3.26	0.65	0.86	3.74	3.6	0.006	0.66	0.0	0.05	15.12	0.00	2.145	4.44	0.24	4.7	95.3	0.0	-1.00	0.37	0.67	0.88	3.33	11269	1473	3	0	0	0	0	logfile
✔	6J6K	0690	2023-02-17	2019-01-15	3.3	3.61	—	3.8	0.005	1.22	0.0	0.06	12.69	0.00	2.357	5.38	1.16	6.8	90.6	2.6	-4.75	0.75	0.81	5.62	3.8	0.005	0.80	0.0	0.04	14.07	0.00	2.258	9.90	0.58	6.6	92.5	0.9	-1.70	0.60	0.69	0.79	4.48	3548	476	4	0	0	0	0	logfile

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