Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NHT	9373	2023-08-19	2018-12-23	2.9	3.26	3.11	3.3	0.006	0.75	0.0	0.04	15.21	0.00	2.394	2.27	0.45	2.1	97.9	0.0	-5.86	0.68	0.85	2.73	3.3	0.002	0.53	0.0	0.04	17.62	0.00	2.177	4.32	1.45	1.1	98.9	0.0	1.65	1.58	0.59	0.81	2.59	26136	3432	24	0	0	0	0	logfile
✔	7ViE	32006	2023-08-11	2021-09-26	2.86	3.10	—	3.1	0.004	0.60	0.0	0.04	13.42	0.00	2.198	8.76	0.51	1.9	98.1	0.0	0.89	0.69	0.84	3.88	3.1	0.002	0.51	0.0	0.04	15.98	0.00	2.082	8.87	1.64	2.2	97.8	0.0	1.00	0.91	0.64	0.85	3.34	8905	1134	6	0	1	0	0	logfile
✔	7N74	24219	2023-08-10	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.57	0.0	0.04	14.64	0.00	2.167	4.93	2.06	1.9	98.1	0.0	2.39	0.54	0.68	0.82	2.46	7859	1036	1	0	4	3	0	logfile
✔	8EYY	28724	2023-08-16	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.002	0.57	0.0	0.04	13.19	0.00	2.184	20.45	0.00	6.9	93.1	0.1	-1.01	1.12	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	6WB2	21585	2023-08-10	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.206	8.83	0.00	3.3	96.7	0.0	-0.40	0.64	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	6YJ6	10817	2023-08-20	2020-04-02	3.1	3.39	3.09	3.3	0.008	0.85	0.0	0.05	9.60	0.00	2.082	2.42	0.07	5.1	94.7	0.1	-4.59	0.73	0.77	4.44	3.3	0.002	0.55	0.0	0.04	13.47	0.00	2.028	5.87	0.07	4.9	95.1	0.0	-0.22	0.72	0.74	0.80	3.41	26878	1635	3	0	22	0	13353	logfile
✔	8FHR	29100	2023-08-10	2022-12-14	2.9	3.23	2.98	3.2	0.009	0.82	0.0	0.05	13.01	0.01	2.289	5.32	0.65	4.2	95.8	0.0	-1.64	0.63	0.86	4.29	3.2	0.002	0.49	0.0	0.04	14.64	0.00	2.217	3.88	1.17	2.4	97.6	0.0	0.92	0.93	0.59	0.85	2.96	7306	950	4	0	4	0	0	logfile
✔	7WXG	32878	2023-08-09	2022-02-14	4.2	4.21	3.56	4.2	0.012	1.07	0.0	0.05	14.22	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.002	0.66	0.0	0.04	14.08	0.00	2.324	9.54	0.00	5.8	94.2	0.0	-0.37	1.29	0.51	0.78	—	3295	430	1	0	1	0	0	logfile
✔	7APD	11852	2023-08-15	2020-10-16	3.9	4.06	—	4.0	0.006	0.84	0.0	0.05	19.77	0.00	1.349	19.29	2.92	8.5	91.4	0.1	-1.98	0.76	0.73	1.33	4.0	0.002	0.56	0.0	0.04	19.65	0.00	2.164	8.91	0.19	4.7	95.3	0.0	-0.12	0.56	0.78	0.75	0.75	17296	2020	10	76	0	0	0	logfile
✔	7RE2	24431	2023-08-14	2021-07-12	3.17	3.46	—	3.4	0.007	0.65	0.0	0.14	12.80	0.00	1.932	8.83	2.42	5.0	95.0	0.0	-0.57	0.77	0.83	3.11	3.4	0.002	0.54	0.0	0.04	14.32	0.00	2.034	8.53	0.06	4.0	96.0	0.0	0.05	0.33	0.77	0.85	2.23	17096	1963	9	71	13	0	0	logfile
✔	6oGZ	20060	2023-08-18	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.82	0.01	2.244	5.40	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.002	0.60	0.0	0.04	17.26	0.00	2.036	9.18	0.37	2.7	97.3	0.0	-1.75	1.44	0.44	0.85	1.69	74962	9081	14	35	2	0	0	logfile
✔	6XEU	22150	2023-08-11	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.47	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.60	0.0	0.04	15.63	0.00	2.305	3.40	0.09	4.3	95.7	0.0	0.15	0.37	0.77	0.89	3.06	10544	1312	8	0	16	0	0	logfile
✔	7MBX	23749	2023-08-10	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	11.68	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.002	0.58	0.0	0.04	15.32	0.00	2.208	6.37	1.00	1.1	98.9	0.0	2.02	0.52	0.71	0.87	4.44	8433	1065	11	0	2	61	0	logfile
✔	7A2i	11625	2023-08-11	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	6.57	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.002	0.53	0.0	0.04	13.99	0.00	2.238	6.00	0.00	4.3	95.7	0.0	-0.30	1.20	0.82	0.85	2.44	9196	1217	2	0	1	0	0	logfile
✔	6TQE	10549	2023-08-11	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.69	0.00	2.010	4.66	0.00	5.1	94.9	0.0	-2.69	1.28	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	8E58	27906	2023-08-15	2022-08-20	3.0	3.15	3.06	3.2	0.007	0.69	0.0	0.12	15.85	0.00	2.199	7.40	0.91	5.4	94.5	0.1	0.19	0.58	0.82	2.81	3.2	0.002	0.64	0.0	0.06	16.35	0.00	2.189	6.69	1.36	5.5	94.5	0.0	0.56	0.32	0.61	0.84	2.60	18449	2247	12	0	28	0	0	logfile
✔	8HR8	34963	2023-08-26	2022-12-15	3.3	3.38	3.32	3.3	0.002	0.46	1.0	0.04	14.94	0.00	2.116	9.71	0.02	3.0	97.0	0.0	-0.57	0.73	0.82	2.48	3.3	0.002	0.50	0.0	0.04	16.52	0.00	2.149	10.67	0.16	2.8	97.2	0.0	0.50	1.10	0.74	0.84	1.94	46688	5839	12	0	5	0	0	logfile
✔	7JPV	22424	2023-08-15	2020-08-10	3.4	3.54	—	3.5	0.006	0.76	0.0	0.04	18.05	0.00	2.040	13.82	7.64	6.6	93.3	0.2	-3.99	0.66	0.83	2.74	3.5	0.002	0.58	0.0	0.04	17.24	0.00	2.159	8.14	0.36	5.2	94.8	0.0	-0.51	0.50	0.64	0.84	2.42	18288	2227	5	0	11	0	0	logfile
✔	7LFX	23308	2023-08-13	2021-01-19	3.1	2.80	—	3.0	0.012	0.64	0.0	0.05	13.11	0.00	2.226	9.82	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	3.0	0.002	0.48	0.0	0.04	15.75	0.00	2.269	13.28	0.31	3.3	96.7	0.0	1.06	0.81	0.65	0.85	2.46	14846	1800	8	0	6	0	0	logfile
✔	6U8A	20686	2023-08-16	2019-09-04	3.4	3.52	3.45	3.5	0.008	0.97	0.0	0.05	15.60	0.01	2.296	3.45	0.37	3.6	96.4	0.0	-3.94	0.68	0.82	2.60	3.5	0.002	0.58	0.0	0.04	16.70	0.00	2.248	7.53	0.37	1.9	98.1	0.0	1.16	0.57	0.68	0.83	2.46	20032	2468	7	0	4	0	0	logfile

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