Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E51	30989	2022-04-07	2021-02-16	3.23	3.40	—	3.4	0.005	0.69	0.0	0.05	14.04	0.00	2.055	9.91	0.00	6.1	93.7	0.2	-3.14	0.81	0.84	2.86	3.4	0.002	0.52	0.0	0.04	15.34	0.00	2.041	8.58	0.04	3.4	96.6	0.0	0.56	1.15	0.82	0.86	1.99	25032	3384	16	0	24	0	0	logfile
✔	7E4X	30988	2022-04-07	2021-02-15	3.08	3.19	—	3.1	0.006	0.61	3.0	0.05	13.52	0.00	2.196	9.85	0.00	6.9	92.9	0.2	-3.25	0.79	0.85	3.13	3.1	0.002	0.54	0.0	0.04	15.10	0.00	2.184	8.22	0.28	3.8	96.2	0.0	0.39	0.38	0.79	0.86	2.74	24936	3384	8	0	0	0	0	logfile
✔	7V7U	31782	2022-04-07	2021-08-21	3.0	3.56	—	3.4	0.005	0.58	0.0	0.05	13.61	0.00	2.194	7.32	0.00	4.8	95.1	0.1	0.24	0.81	0.84	2.19	3.4	0.002	0.55	0.0	0.04	15.10	0.00	2.218	6.36	1.55	3.6	96.3	0.1	0.53	0.43	0.81	0.84	2.05	25283	3088	41	0	83	0	0	logfile
✔	7NJP	12402	2022-04-07	2021-02-17	2.84	2.89	—	2.7	0.003	0.49	0.0	0.04	14.36	0.00	2.035	6.55	0.00	2.3	97.7	0.0	1.92	0.86	0.86	3.44	2.7	0.002	0.52	0.0	0.04	15.50	0.00	1.806	6.78	0.34	2.3	97.7	0.0	1.77	0.90	0.86	0.88	3.28	74554	4929	31	0	11	16	37305	logfile
✔	7S9B	24931	2022-04-05	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.002	0.67	0.0	0.04	11.96	0.00	2.251	11.22	0.00	6.7	93.3	0.0	0.44	0.44	0.60	0.79	—	10458	1356	2	0	0	0	0	logfile
✔	7RPK	24617	2022-04-05	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.23	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.002	0.59	0.0	0.04	15.70	0.00	2.211	5.50	1.24	2.3	97.7	0.0	2.10	1.02	0.70	0.87	3.63	10018	1104	5	0	40	42	0	logfile
✔	7EG1	31104	2022-04-05	2021-03-23	3.2	3.30	—	3.3	0.007	0.66	0.0	0.04	14.36	0.01	2.026	16.04	0.36	11.9	88.0	0.1	-5.05	0.81	0.86	3.43	3.3	0.002	0.58	0.0	0.04	15.46	0.00	2.060	5.17	0.36	10.2	89.8	0.0	-0.29	0.44	0.81	0.86	3.10	15260	1878	8	0	8	0	0	logfile
✔	7N74	24219	2022-04-04	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.58	0.0	0.04	14.62	0.00	2.122	5.25	1.93	1.4	98.6	0.0	1.71	0.54	0.67	0.81	2.47	7859	1036	1	0	4	3	0	logfile
✔	7RTN	24684	2022-04-04	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.42	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.78	2.76	6018	810	3	0	0	0	0	logfile
✔	7KLU	22918	2022-04-06	2020-11-01	3.5	3.35	—	3.4	0.004	0.60	0.0	0.04	15.43	0.00	2.005	5.76	0.00	4.0	96.0	0.0	-0.73	0.77	0.80	2.13	3.4	0.002	0.57	0.0	0.04	17.30	0.00	1.959	7.81	0.19	4.7	95.3	0.0	-0.73	0.95	0.78	0.81	1.98	19742	2452	8	0	12	0	0	logfile
✔	7MEY	23807	2022-04-05	2021-04-08	3.67	4.19	3.68	3.6	0.003	0.54	0.0	0.04	14.81	0.00	2.049	10.74	0.00	3.2	96.8	0.0	0.75	0.85	0.79	1.30	3.6	0.002	0.61	0.0	0.04	16.07	0.00	2.059	11.56	0.16	3.0	97.0	0.0	0.67	0.44	0.87	0.83	1.12	16468	2033	7	0	8	0	0	logfile
✔	7R9E	24324	2022-04-04	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.58	0.0	0.04	9.06	0.00	2.156	9.58	0.00	5.2	94.8	0.0	0.03	2.07	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7R9K	24328	2022-04-04	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.002	0.52	0.0	0.04	8.10	0.00	1.907	9.19	0.00	5.0	95.0	0.0	0.38	1.77	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7VDM	31923	2022-04-04	2021-09-07	2.98	2.90	—	3.0	0.008	1.29	0.0	0.07	13.54	0.01	2.261	4.11	0.22	4.5	95.5	0.0	-2.74	0.66	0.77	3.13	3.0	0.002	0.59	0.0	0.04	16.60	0.00	2.139	8.40	2.04	2.9	97.1	0.0	0.53	1.54	0.67	0.78	2.73	8563	1096	7	0	1	0	0	logfile
✔	7o6Q	12740	2022-04-04	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7PEo	13355	2022-04-07	2021-08-11	4.37	6.48	—	4.4	0.014	1.72	0.0	0.13	14.96	0.02	2.206	4.00	0.60	2.5	97.5	0.0	-2.52	0.90	0.86	—	4.3	0.002	0.59	0.0	0.03	12.27	0.00	2.077	7.95	0.04	2.1	97.9	0.0	1.87	1.35	0.91	0.89	—	26278	3388	42	0	210	0	0	logfile
✔	7PW9	13679	2022-04-05	2021-10-06	3.12	3.26	—	3.2	0.004	0.67	0.0	0.16	13.58	0.00	2.021	5.76	0.07	3.3	96.6	0.0	1.77	0.73	0.79	1.98	3.3	0.002	0.50	0.0	0.04	14.99	0.00	1.976	4.87	0.20	2.7	97.3	0.0	2.16	0.91	0.74	0.82	2.19	16339	2066	4	0	199	0	0	logfile
✔	7PMD	13529	2022-04-05	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	2.0	0.06	14.82	0.01	1.314	3.61	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.002	0.66	1.0	0.04	15.37	0.00	2.012	6.87	0.55	1.9	98.1	0.0	1.80	1.26	0.93	0.87	2.98	10189	1264	6	0	6	0	0	logfile
✔	6TYi	20583	2022-04-04	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.002	0.52	0.0	0.03	17.16	0.00	2.221	6.27	0.11	2.8	97.2	0.0	3.28	1.18	0.71	0.82	1.28	9184	1186	11	0	4	0	0	logfile
✔	7VGX	31979	2022-04-05	2021-09-19	3.2	2.32	—	3.3	0.004	0.66	0.0	0.05	12.58	0.00	2.255	5.84	0.00	3.1	96.9	0.0	0.12	0.76	0.79	3.49	3.3	0.002	0.52	0.0	0.04	15.32	0.00	2.249	4.90	0.20	2.0	98.0	0.0	0.43	1.32	0.77	0.82	2.99	9044	1149	6	0	0	0	0	logfile

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