Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M62	23687	2022-11-29	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	7WP5	32669	2022-11-29	2022-01-22	3.9	4.08	—	4.0	0.005	1.02	0.0	0.06	14.06	0.01	2.278	4.75	0.56	9.1	90.7	0.2	-4.27	0.59	0.74	2.00	4.0	0.003	0.76	0.0	0.05	16.66	0.00	2.172	12.26	0.28	9.8	90.0	0.2	-2.82	0.64	0.59	0.74	1.45	3340	425	4	0	2	0	0	logfile
✔	7SK2	25170	2022-11-29	2021-10-19	3.82	4.03	—	3.9	0.007	1.05	0.0	0.06	13.60	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.74	0.0	0.04	15.93	0.00	2.115	17.89	0.47	5.1	94.9	0.0	-0.64	0.53	0.50	0.70	1.11	4177	532	1	0	1	0	0	logfile
✔	7WX4	32876	2022-11-29	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.55	0.0	0.04	17.53	0.00	2.137	5.71	0.00	4.8	95.2	0.0	-0.17	0.47	0.41	0.81	0.60	1992	260	2	0	0	0	0	logfile
✔	7PDH	13338	2022-11-29	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.54	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.69	0.0	0.04	16.40	0.00	2.171	14.54	0.00	6.7	93.3	0.0	-0.70	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	7PDD	13334	2022-11-29	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	21.59	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.76	0.0	0.04	13.98	0.00	2.150	21.36	0.00	5.3	94.7	0.0	-1.30	1.86	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7F63	31471	2022-11-29	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.003	0.79	0.0	0.05	15.84	0.00	2.142	15.49	0.54	10.0	89.5	0.5	-2.58	1.48	0.65	0.70	1.33	3375	429	3	0	0	0	0	logfile
✔	7WEF	32449	2022-11-29	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.003	0.64	0.0	0.04	14.76	0.00	2.178	8.92	0.28	7.3	92.7	0.0	-1.35	0.35	0.55	0.77	1.93	3328	432	3	0	0	0	0	logfile
✔	7F62	31470	2022-11-29	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.89	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	4.1	0.003	0.66	0.0	0.04	15.35	0.00	2.242	11.10	0.55	9.8	90.2	0.0	-1.83	1.44	0.69	0.77	1.00	3321	427	3	0	0	0	0	logfile
✔	7W9F	32366	2022-11-29	2021-12-09	3.6	2.59	—	2.2	0.003	0.72	0.0	0.05	13.99	0.01	2.302	3.47	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.66	0.0	0.04	16.05	0.00	2.090	11.05	0.37	4.4	95.6	0.0	-1.09	0.54	0.74	0.73	1.89	4856	625	3	0	0	0	0	logfile
✔	7ABK	11698	2022-11-29	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.66	0.0	0.03	19.91	0.00	2.304	7.87	0.00	2.1	97.9	0.0	5.18	1.55	0.28	0.85	1.35	1574	196	1	0	0	0	0	logfile
✔	7F9W	31499	2022-11-29	2021-07-05	3.2	3.72	—	3.6	0.005	0.68	0.0	0.04	12.99	0.00	2.114	9.28	0.63	4.5	95.5	0.0	0.24	0.76	0.80	3.40	3.6	0.003	0.68	0.0	0.04	15.67	0.00	2.132	9.06	1.06	3.7	96.3	0.0	0.29	0.50	0.77	0.81	2.81	4217	547	3	0	0	0	0	logfile
✔	7QJZ	14027	2022-11-29	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.58	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.5	0.003	0.71	0.0	0.05	14.98	0.00	2.231	6.83	0.26	4.2	95.8	0.0	-2.74	3.99	0.35	0.74	4.05	3378	444	6	0	0	0	0	logfile
✔	7QKK	14045	2022-11-29	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.98	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.69	0.0	0.05	17.34	0.00	2.154	11.04	1.52	6.3	93.7	0.0	-3.55	2.17	0.34	0.78	3.12	3537	228	3	0	0	0	1803	logfile
✔	7K9i	22749	2022-11-29	2020-09-29	3.3	3.72	3.48	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.118	12.07	0.00	3.6	96.4	0.0	-0.86	0.55	0.82	3.38	3.6	0.003	0.71	0.0	0.04	14.44	0.00	2.179	13.00	0.28	4.3	95.7	0.0	-0.56	1.62	0.53	0.82	2.68	3295	423	4	0	1	0	0	logfile
✔	7TAS	25783	2022-11-29	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.49	0.0	0.09	11.42	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.66	0.0	0.04	13.84	0.00	2.239	5.45	0.34	3.9	96.1	0.0	-0.14	0.52	0.65	0.85	4.09	3147	417	4	0	3	0	0	logfile
✔	7RR0	24649	2022-11-29	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.18	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.75	0.0	0.04	15.98	0.00	2.216	11.32	0.00	3.6	96.4	0.0	-0.08	1.26	0.77	0.81	2.73	3297	422	4	0	1	0	0	logfile
✔	7QK2	14029	2022-11-29	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.76	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.003	0.65	0.0	0.05	17.08	0.00	2.113	4.99	2.96	2.7	97.3	0.0	-1.83	1.72	0.37	0.87	5.30	3246	426	6	0	0	0	0	logfile
✔	7M64	23688	2022-11-29	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7N9A	24253	2022-11-29	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.70	0.0	0.04	15.29	0.00	2.157	13.87	1.55	2.9	97.1	0.0	-1.08	0.56	0.73	0.70	2.14	2431	312	2	0	0	0	0	logfile

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