Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N2P	9332	2021-09-03	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.59	0.0	0.04	10.84	0.00	2.177	5.15	0.00	7.1	92.9	0.0	0.86	1.41	0.60	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	7CX3	30490	2021-09-02	2020-09-01	2.8	3.05	—	3.0	0.006	0.67	0.0	0.05	12.64	0.00	2.109	7.86	0.00	4.0	96.0	0.0	-1.96	0.68	0.81	3.41	3.0	0.002	0.56	0.0	0.04	15.84	0.00	2.153	6.27	1.67	2.8	97.2	0.0	0.80	1.13	0.68	0.83	3.08	7923	1019	6	0	1	0	0	logfile
✔	6ZBE	11152	2021-09-04	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.08	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.002	0.49	0.0	0.03	15.37	0.00	2.053	5.02	0.18	1.1	98.9	0.0	4.31	1.88	0.86	0.80	1.08	19534	1160	4	0	0	0	9902	logfile
✔	7CX4	30491	2021-09-02	2020-09-01	2.9	3.15	—	3.1	0.004	0.81	0.0	0.05	13.18	0.00	2.032	7.86	0.00	3.5	96.5	0.0	-1.78	0.66	0.80	3.58	3.1	0.002	0.60	0.0	0.04	16.48	0.00	2.161	7.09	2.39	2.8	97.2	0.0	0.53	1.15	0.68	0.82	2.63	7926	1020	6	0	1	0	0	logfile
✔	7AKV	11814	2021-09-02	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	74.40	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.002	0.55	0.0	0.04	16.17	0.00	1.899	70.87	0.16	10.7	89.2	0.1	-3.12	0.87	0.81	0.81	1.88	6201	799	2	0	0	0	245	logfile
✔	7NVH	12604	2021-09-02	2021-03-15	3.0	3.23	3.00	3.2	0.005	0.65	0.0	0.04	14.11	0.01	2.145	7.70	0.69	5.6	94.4	0.0	-0.42	0.64	0.86	2.63	3.2	0.002	0.57	0.0	0.04	15.21	0.00	2.257	6.81	0.87	3.9	96.1	0.0	1.24	0.91	0.64	0.87	2.50	5528	717	1	0	1	0	0	logfile
✔	6ZLG	11265	2021-09-05	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.60	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.002	0.37	0.0	0.03	17.92	0.00	2.140	5.93	2.64	1.5	98.5	0.0	5.31	1.61	0.82	0.89	2.59	33008	4072	24	0	0	0	0	logfile
✔	7LD5	23282	2021-09-03	2021-01-12	3.07	3.46	—	3.4	0.006	0.67	0.0	0.05	16.01	0.00	2.102	8.65	6.51	4.3	95.7	0.0	-2.06	0.77	0.82	2.94	3.4	0.002	0.53	0.0	0.04	15.97	0.00	2.190	7.24	0.14	2.4	97.6	0.0	1.23	0.38	0.72	0.81	3.06	13542	1761	9	15	6	0	0	logfile
✔	7MiL	23855	2021-09-04	2021-04-17	3.86	3.21	—	3.2	0.006	1.17	0.0	0.05	12.91	0.01	2.304	2.86	0.68	4.4	95.4	0.2	-5.90	0.75	0.77	2.34	3.2	0.002	0.63	0.0	0.04	15.96	0.00	2.140	7.77	0.26	4.3	95.7	0.0	-1.26	1.56	0.75	0.78	1.83	21753	2624	8	0	9	0	0	logfile
✔	7MiN	23857	2021-09-04	2021-04-17	3.09	3.25	—	3.2	0.008	1.64	0.0	0.05	20.91	0.01	2.303	4.34	0.18	4.6	95.3	0.2	-6.07	0.75	0.89	4.45	3.2	0.002	0.57	0.0	0.04	16.55	0.00	2.180	6.11	0.00	3.4	96.6	0.0	0.74	0.70	0.75	0.89	3.01	22728	2560	8	0	40	0	0	logfile
✔	6ZBC	11150	2021-09-04	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	0.97	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.48	0.0	0.03	15.15	0.00	2.042	4.10	0.00	1.1	98.9	0.0	4.73	0.89	0.86	0.82	1.38	19534	1160	4	0	0	0	9902	logfile
✔	7MR1	23953	2021-09-04	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.66	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.002	0.58	0.0	0.04	14.71	0.00	2.202	10.04	0.00	5.3	94.7	0.0	-0.03	0.35	0.84	0.83	—	18473	2316	3	0	0	0	0	logfile
✔	6ZY7	11553	2021-09-04	2020-07-30	4.64	8.26	4.84	4.6	0.012	1.04	0.0	0.08	12.31	0.01	2.218	6.49	0.00	1.7	98.3	0.0	-1.71	0.93	0.83	—	4.6	0.002	0.58	0.0	0.04	13.97	0.00	2.136	15.72	0.00	2.8	97.2	0.0	-0.34	2.31	0.94	0.83	—	19979	2319	10	60	4	0	0	logfile
✔	7MR3	23955	2021-09-04	2021-05-07	3.6	4.01	—	3.9	0.005	0.84	0.0	0.05	16.39	0.01	2.250	5.31	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.002	0.57	0.0	0.04	17.73	0.00	2.175	8.49	0.08	5.0	95.0	0.0	0.41	0.32	0.83	0.83	1.35	23615	2854	5	40	0	0	0	logfile
✔	6ZBG	11154	2021-09-04	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.49	0.0	0.03	15.31	0.00	2.007	4.86	0.18	1.2	98.8	0.0	4.21	1.89	0.86	0.81	1.46	19534	1160	4	0	0	0	9902	logfile
✔	6ZBL	11157	2021-09-06	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.47	0.0	0.03	15.52	0.00	1.997	3.86	0.09	1.1	98.9	0.0	4.53	1.37	0.88	0.82	0.85	39074	2326	4	0	0	0	19788	logfile
✔	6ZBH	11155	2021-09-04	2020-06-08	3.6	4.44	3.80	3.9	0.010	1.17	0.0	0.08	13.65	0.01	2.465	0.92	0.00	1.0	99.0	0.0	0.82	0.86	0.76	1.40	3.9	0.002	0.49	0.0	0.03	15.16	0.00	2.070	6.40	0.18	1.5	98.5	0.0	4.39	1.53	0.88	0.81	1.31	19523	1159	4	0	0	0	9896	logfile
✔	7LHV	23351	2021-09-02	2021-01-26	2.75	3.33	2.83	3.3	0.007	0.74	0.0	0.04	14.07	0.00	2.299	4.60	0.00	3.5	96.5	0.0	0.97	0.55	0.73	2.12	3.3	0.002	0.49	0.0	0.04	14.17	0.00	2.181	5.41	0.93	3.3	96.7	0.0	1.26	0.59	0.55	0.77	2.86	9094	1150	6	0	8	2	0	logfile
✔	6UGD	20761	2021-09-03	2019-09-26	3.5	3.93	—	3.8	0.006	1.00	0.0	0.05	14.47	0.01	2.082	3.49	0.23	7.4	92.5	0.1	-4.95	0.65	0.69	1.81	3.8	0.002	0.51	0.0	0.04	16.01	0.00	2.051	4.99	0.00	4.0	96.0	0.0	-1.05	1.58	0.72	0.82	1.21	13928	1865	13	0	11	0	0	logfile
✔	6UGF	20763	2021-09-03	2019-09-26	4.2	4.51	—	4.2	0.008	1.11	0.0	0.05	13.93	0.01	2.046	4.71	0.30	6.0	93.9	0.1	-4.55	0.80	0.72	—	4.3	0.002	0.59	0.0	0.04	13.31	0.00	2.051	7.18	0.00	4.1	95.9	0.0	-0.23	0.69	0.84	0.81	—	13874	1862	12	0	9	0	0	logfile

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