Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TT1	26107	2023-02-23	2022-01-31	4.3	4.56	—	4.4	0.004	0.82	0.0	0.05	10.41	0.00	1.973	3.78	0.00	1.3	98.7	0.0	0.92	0.72	0.72	—	4.4	0.002	0.60	0.0	0.04	12.79	0.00	1.974	9.66	0.00	2.9	97.1	0.0	0.01	1.54	0.72	0.75	—	20398	1329	6	0	0	0	10005	logfile
✔	7EG1	31104	2023-02-21	2021-03-23	3.2	3.30	—	3.3	0.006	0.65	0.0	0.04	14.25	0.01	2.026	16.04	0.36	11.9	88.0	0.1	-5.05	0.81	0.86	3.43	3.3	0.002	0.57	0.0	0.04	15.42	0.00	2.061	5.50	0.12	9.2	90.8	0.0	-0.13	1.18	0.81	0.87	2.93	15260	1878	8	0	8	0	0	logfile
✔	7oJi	12952	2023-02-19	2021-05-16	3.4	3.75	3.40	3.6	0.012	1.08	0.0	0.08	11.46	0.00	2.231	4.30	0.41	4.8	95.0	0.2	-0.15	0.69	0.83	3.28	3.6	0.002	0.56	0.0	0.04	14.74	0.00	2.214	5.59	0.61	4.2	95.8	0.0	0.57	0.69	0.72	0.87	2.73	9195	1144	4	0	9	0	0	logfile
✔	7YQ3	34018	2023-02-21	2022-08-05	3.6	3.98	3.76	4.0	0.013	1.20	5.0	0.07	16.55	0.01	2.136	5.51	0.32	8.9	91.1	0.0	-4.22	0.63	0.67	1.96	4.0	0.002	0.76	0.0	0.04	17.45	0.00	2.169	8.11	0.39	6.9	93.1	0.0	-2.38	1.20	0.74	0.79	1.33	14412	1707	5	28	0	0	0	logfile
✔	7SH2	25122	2023-02-23	2021-10-07	3.23	3.55	—	3.5	0.002	0.56	0.0	0.04	15.06	0.00	2.135	7.81	0.04	4.4	95.6	0.0	0.45	0.69	0.68	1.22	3.5	0.002	0.57	0.0	0.04	16.50	0.00	1.961	10.93	0.22	4.7	95.3	0.0	0.33	0.97	0.72	0.75	1.30	20933	2545	15	23	9	0	0	logfile
✔	6XZC	10658	2023-02-20	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.002	0.54	0.0	0.03	15.13	0.00	2.208	5.54	0.22	0.5	99.5	0.0	5.22	1.10	0.72	0.84	0.90	13279	1694	7	0	0	0	0	logfile
✔	7R6K	24280	2023-02-23	2021-06-22	3.17	3.23	3.15	3.2	0.003	0.52	0.0	0.04	14.70	0.00	2.200	8.68	0.00	4.3	95.7	0.0	0.58	0.73	0.79	2.37	3.2	0.002	0.50	0.0	0.03	15.88	0.00	2.182	7.38	0.16	4.5	95.5	0.0	1.36	0.41	0.73	0.81	2.16	20543	2153	16	152	0	0	0	logfile
✔	7WAF	32384	2023-02-25	2021-12-14	2.52	2.97	2.47	2.8	0.003	0.58	0.0	0.05	13.61	0.00	1.339	7.48	0.11	3.7	96.3	0.1	0.15	0.80	0.87	3.60	2.8	0.002	0.52	0.0	0.04	15.40	0.00	1.948	7.32	1.15	3.3	96.6	0.1	0.37	0.91	0.80	0.90	3.30	24842	3226	16	0	20	0	0	logfile
✔	7V19	26954	2023-02-18	2022-05-11	3.3	3.11	3.32	3.2	0.002	0.50	0.0	0.04	11.70	0.01	2.186	4.92	1.16	1.6	98.4	0.0	1.59	0.52	0.80	3.44	3.2	0.002	0.51	0.0	0.04	14.93	0.00	2.175	7.26	0.21	1.3	98.7	0.0	2.13	0.64	0.54	0.83	2.66	8936	1114	8	0	8	0	0	logfile
✔	7YVQ	34136	2023-02-27	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	3.3	0.002	0.47	0.0	0.04	14.98	0.00	2.207	6.67	0.49	4.8	95.2	0.0	0.12	1.28	0.79	0.89	3.08	30742	3874	15	0	21	0	0	logfile
✔	7T8C	25744	2023-02-26	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	10.96	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	7EYA	31380	2023-02-17	2021-05-30	3.77	3.98	—	4.0	0.008	0.99	0.0	0.04	13.90	0.01	2.142	8.20	0.00	7.6	92.2	0.2	-2.30	0.60	0.77	2.21	4.0	0.002	0.64	0.0	0.04	16.07	0.01	2.193	9.31	0.20	7.2	92.6	0.2	-1.77	1.17	0.60	0.77	2.24	4629	576	5	0	3	0	0	logfile
✔	7RB8	24399	2023-02-21	2021-07-05	3.63	3.84	3.65	3.8	0.004	0.68	0.0	0.05	14.22	0.00	1.921	8.73	0.07	5.4	94.6	0.0	-0.17	0.59	0.86	2.65	3.8	0.002	0.61	0.0	0.04	15.58	0.00	2.214	7.81	0.20	4.6	95.4	0.0	0.55	0.49	0.60	0.87	2.07	14226	1786	8	0	8	0	0	logfile
✔	8CY8	27070	2023-02-26	2022-05-23	2.94	3.19	3.01	3.2	0.011	0.79	0.0	0.06	12.77	0.01	2.171	3.51	0.00	0.6	99.4	0.0	1.60	0.74	0.87	4.77	3.2	0.002	0.51	0.0	0.04	15.62	0.00	2.156	4.38	1.06	1.2	98.8	0.0	2.15	0.92	0.72	0.87	3.60	28800	3744	23	0	12	0	0	logfile
✔	6XiT	22200	2023-02-23	2020-06-21	3.3	2.22	—	3.5	0.010	0.97	0.0	0.06	14.19	0.01	1.894	10.11	0.74	4.0	96.0	0.0	-3.79	0.65	0.73	3.11	3.5	0.002	0.58	0.0	0.04	16.42	0.00	2.188	11.97	0.37	2.5	97.5	0.0	0.40	1.12	0.69	0.81	2.04	10403	1308	8	0	7	0	0	logfile
✔	7UQK	26697	2023-02-26	2022-04-19	3.1	2.64	3.08	3.1	0.005	0.94	1.0	0.05	16.27	0.01	2.262	5.84	0.37	7.6	92.3	0.1	-4.31	0.61	0.76	2.39	3.0	0.002	0.61	0.0	0.04	17.32	0.00	2.164	9.20	0.18	5.6	94.4	0.0	-0.19	1.08	0.66	0.82	1.82	29142	3631	12	0	5	0	0	logfile
✔	7LUV	23527	2023-02-22	2021-02-23	3.7	4.02	—	3.6	0.007	0.80	0.0	0.05	9.84	0.00	2.050	10.89	0.05	9.6	90.1	0.3	-4.47	0.76	0.79	2.90	3.6	0.002	0.61	0.0	0.04	13.35	0.00	2.152	6.93	0.45	5.2	94.8	0.0	0.42	0.90	0.77	0.82	1.91	18773	2168	6	0	210	0	0	logfile
✔	7VB0	31873	2023-02-27	2021-08-30	3.6	2.84	3.39	3.2	0.003	0.55	0.0	0.04	13.49	0.00	1.982	6.16	0.00	1.9	98.1	0.0	0.96	0.63	0.78	2.84	3.2	0.002	0.54	0.0	0.04	16.23	0.00	2.005	8.35	0.23	2.1	97.9	0.0	0.54	0.72	0.65	0.79	2.41	29553	3788	16	0	5	0	0	logfile
✔	6WHC	21671	2023-02-18	2020-04-07	3.4	3.86	3.36	3.7	0.004	0.79	0.0	0.05	14.51	0.01	2.238	6.32	0.00	4.0	96.0	0.0	-4.67	0.83	0.82	1.97	3.7	0.002	0.64	0.0	0.04	15.81	0.00	2.162	10.48	0.44	3.1	96.9	0.0	-0.46	1.01	0.82	0.83	1.72	8709	1126	6	0	0	0	0	logfile
✔	7ZDQ	14666	2023-02-17	2022-03-29	3.2	2.77	3.10	2.9	0.002	0.54	0.0	0.04	15.18	0.00	2.212	6.38	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.1	0.002	0.49	0.0	0.04	16.10	0.00	2.218	5.89	0.15	2.8	97.2	0.0	1.51	0.24	0.71	0.84	3.04	6264	763	3	0	3	0	0	logfile

• ← previous
• Page 4 of 353
• next →