Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DLU	7957	2023-02-20	2018-06-02	3.75	3.84	—	3.8	0.009	0.94	0.0	0.05	9.95	0.00	1.944	12.48	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.002	0.69	0.0	0.04	13.94	0.00	1.984	8.44	0.30	4.4	95.6	0.0	0.08	2.39	0.32	0.81	1.17	11991	1481	4	0	4	0	0	logfile
✔	7QKH	14042	2023-02-17	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.003	0.96	0.0	0.22	15.30	0.00	2.124	7.42	0.00	5.2	94.8	0.0	-2.68	2.29	0.32	0.70	4.11	3105	204	6	0	0	0	1593	logfile
✔	7NCK	12269	2023-02-17	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.003	0.58	0.0	0.05	15.74	0.00	2.151	7.19	0.37	4.3	95.7	0.0	-2.05	0.92	0.33	0.71	2.63	5430	384	6	0	0	0	2778	logfile
✔	7CZ5	31824	2023-02-18	2020-09-07	2.6	2.14	—	14.0	0.004	0.69	0.0	0.05	13.25	0.00	2.186	6.27	0.00	3.3	96.7	0.0	-2.04	0.25	0.05	0.50	10.0	0.003	0.65	0.0	0.04	15.11	0.00	2.090	14.88	0.78	5.0	95.0	0.0	-0.37	0.85	0.33	0.18	0.67	8336	1046	11	0	3	3	0	logfile
✔	7ZFW	14704	2023-02-20	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.92	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.90	0.0	0.04	20.26	0.01	1.952	38.01	0.00	0.0	0.0	0.0	—	2.55	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	8A1S	15086	2023-02-25	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.79	0.0	0.05	13.07	0.01	1.990	16.76	0.27	4.6	95.2	0.2	-1.37	1.67	0.33	0.21	—	67152	8528	32	0	32	0	0	logfile
✔	6QJM	4564	2023-02-16	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.57	0.0	0.05	13.66	0.00	2.146	4.49	0.00	5.1	94.9	0.0	-2.42	1.59	0.33	0.73	2.58	846	111	3	0	0	0	0	logfile
✔	7U10	26273	2023-02-17	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.005	0.67	0.0	0.06	17.93	0.00	2.175	13.04	3.17	7.0	93.0	0.0	-3.28	2.75	0.33	0.72	3.71	3429	405	6	0	12	0	0	logfile
✔	7RTo	24685	2023-02-17	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.47	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.002	0.64	0.0	0.04	16.57	0.00	2.236	7.84	0.16	5.3	94.7	0.0	1.56	0.51	0.33	0.78	1.86	6607	888	3	0	0	0	0	logfile
✔	7U13	26276	2023-02-17	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	0.96	0.0	0.06	18.45	0.00	2.194	14.61	3.67	12.3	87.7	0.0	-4.21	6.72	0.33	0.56	1.63	3456	405	6	0	12	0	0	logfile
✔	7QKK	14045	2023-02-17	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.41	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.67	0.0	0.05	17.21	0.00	2.149	11.32	1.01	7.7	92.3	0.0	-3.49	2.18	0.34	0.79	3.16	3537	228	3	0	0	0	1803	logfile
✔	6YBV	10774	2023-02-18	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.84	0.0	0.05	18.35	0.00	2.023	19.92	0.80	11.9	87.9	0.1	-2.54	3.35	0.34	0.59	0.71	6731	769	5	78	0	0	0	logfile
✔	5M3L	3434	2023-02-23	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.28	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.004	0.76	0.0	0.04	16.98	0.00	2.103	11.76	1.08	5.3	94.5	0.2	-0.26	0.89	0.34	0.75	1.29	19007	2394	27	0	12	0	0	logfile
✔	7U12	26275	2023-02-17	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.005	0.91	0.0	0.06	15.76	0.00	2.056	17.29	0.26	11.8	88.2	0.0	-3.89	2.91	0.34	0.57	2.15	3456	405	6	0	12	0	0	logfile
✔	7QKZ	14058	2023-02-16	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.60	0.01	2.257	11.23	0.00	1.2	98.8	0.0	-0.53	5.08	0.34	0.64	6.63	1701	99	9	0	0	0	891	logfile
✔	6TJo	10512	2023-02-16	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.003	0.74	0.0	0.05	12.71	0.00	2.308	6.81	0.00	5.4	94.6	0.0	-3.46	1.41	0.34	0.75	4.46	2439	321	3	0	0	0	0	logfile
✔	7ELL	31184	2023-02-23	2021-04-12	3.8	4.24	—	3.8	0.006	0.86	1.0	0.05	14.83	0.01	1.176	17.74	0.62	8.9	90.9	0.2	-2.13	0.35	0.86	1.77	3.8	0.004	0.77	1.0	0.05	16.00	0.00	2.044	12.26	0.43	4.4	95.5	0.1	-0.01	1.30	0.34	0.88	1.92	60584	7917	31	0	10	0	0	logfile
✔	6M7D	30129	2023-02-17	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.51	0.0	0.04	15.72	0.00	2.232	8.89	1.46	1.5	98.5	0.0	2.16	0.85	0.34	0.88	3.05	3280	412	2	6	0	0	0	logfile
✔	8GWB	34308	2023-02-24	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.29	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	7TMC	25995	2023-02-17	2022-01-19	3.25	3.24	2.95	4.2	0.004	0.66	0.0	0.06	15.86	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.004	0.81	0.0	0.07	17.25	0.01	2.100	17.59	0.53	10.5	89.5	0.0	-3.76	1.94	0.34	0.74	3.12	3426	405	6	0	12	0	0	logfile

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