Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DW1	8923	2023-02-18	2018-06-26	3.1	3.36	—	3.3	0.005	0.91	0.0	0.05	11.32	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.003	0.67	0.0	0.04	15.12	0.00	2.114	9.17	0.56	5.7	94.3	0.0	-1.52	0.99	0.70	0.85	4.21	8595	1046	13	0	24	0	0	logfile
✔	7N1V	24124	2023-02-26	2021-05-28	3.21	2.67	—	2.0	0.013	1.76	10.0	0.13	13.79	0.01	1.776	4.31	0.98	6.5	93.2	0.3	-1.63	0.82	0.80	3.43	2.1	0.007	0.79	0.0	0.05	15.87	0.00	2.088	11.82	0.87	5.5	94.5	0.0	-0.42	1.32	0.84	0.83	2.73	26947	3274	35	0	95	0	0	logfile
✔	7TY0	26163	2023-02-19	2022-02-10	3.5	3.62	3.44	3.6	0.013	1.48	1.0	0.10	8.96	0.01	2.417	1.03	0.39	2.1	97.7	0.1	0.78	0.70	0.73	3.93	3.6	0.003	0.64	0.0	0.05	12.57	0.00	1.964	6.61	0.65	3.8	96.2	0.0	0.43	0.59	0.72	0.76	3.63	10640	1522	18	0	24	0	0	logfile
✔	7WPD	32683	2023-02-26	2022-01-23	3.18	2.39	—	2.1	0.002	0.53	2.0	0.08	12.44	0.00	1.866	5.06	0.03	3.1	96.9	0.0	0.82	0.68	0.69	2.15	2.1	0.004	0.64	0.0	0.05	14.63	0.00	2.089	9.04	0.49	4.1	95.9	0.0	0.06	0.52	0.71	0.75	2.23	27762	3628	11	0	37	0	0	logfile
✔	7VAK	31845	2023-02-27	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.26	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	7WPC	32682	2023-02-18	2022-01-23	2.57	2.17	—	2.0	0.003	0.71	0.0	0.05	15.08	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.003	0.64	0.0	0.04	17.84	0.00	1.937	9.65	1.62	4.5	95.5	0.0	-0.91	1.33	0.74	0.81	3.20	8057	980	6	0	9	0	0	logfile
✔	7CG0	30348	2023-02-19	2020-06-30	3.2	3.51	—	3.5	0.003	0.53	0.0	0.04	11.23	0.00	1.992	8.37	2.56	3.0	97.0	0.0	3.52	0.37	0.79	1.26	3.5	0.003	0.69	0.0	0.04	16.05	0.00	2.053	11.09	0.88	2.7	97.3	0.0	2.95	0.86	0.39	0.83	1.21	10928	1412	21	0	75	0	0	logfile
✔	7N1W	24125	2023-02-25	2021-05-28	3.33	2.63	—	2.0	0.013	1.77	17.0	0.12	13.88	0.01	1.951	6.11	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	1.9	0.004	0.73	0.0	0.05	15.89	0.00	2.008	11.72	0.49	4.9	95.1	0.0	-0.15	1.57	0.84	0.82	2.35	26810	3257	35	0	95	0	0	logfile
✔	6SAG	10130	2023-02-21	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✔	7PP4	13579	2023-02-24	2021-09-13	3.84	4.20	3.93	4.0	0.002	0.48	0.0	0.04	9.43	0.00	1.926	5.55	0.39	3.3	96.7	0.0	-0.03	0.83	0.80	1.49	4.0	0.005	0.72	0.0	0.04	13.88	0.00	2.041	11.96	0.35	5.4	94.6	0.0	-0.35	1.35	0.84	0.84	1.18	23816	3059	7	0	3	0	0	logfile
✔	7WPA	32680	2023-02-27	2022-01-23	2.77	2.26	—	2.1	0.003	0.76	2.0	0.05	14.12	0.01	2.327	3.38	0.45	5.4	94.5	0.0	-4.08	0.72	0.73	2.35	2.0	0.004	0.69	0.0	0.05	16.47	0.00	2.170	9.91	2.68	5.7	94.3	0.0	-1.52	0.64	0.76	0.81	2.88	30444	3774	20	0	47	0	0	logfile
✔	7NVX	12616	2023-02-24	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.004	0.72	0.0	0.04	18.10	0.00	0.904	15.82	0.32	5.1	94.8	0.0	-0.66	0.93	0.72	0.67	1.17	23663	2796	18	50	35	0	0	logfile
✔	6YJ4	10815	2023-02-25	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.92	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.5	0.005	1.03	0.0	0.18	16.84	0.00	1.386	6.85	1.61	3.4	96.6	0.0	0.76	0.57	0.63	0.84	3.71	66311	8126	94	0	50	275	0	logfile
✔	7KRA	23003	2023-02-22	2020-11-19	3.2	3.86	—	3.7	0.005	0.82	0.0	0.05	15.01	0.00	2.182	3.60	0.05	2.9	97.1	0.0	-2.08	0.77	0.83	3.19	3.7	0.003	0.67	0.0	0.04	16.46	0.00	2.110	7.51	0.37	9.0	91.0	0.0	-0.95	0.37	0.77	0.84	2.83	17293	2119	15	0	51	0	0	logfile
✔	7N1U	24123	2023-02-25	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.59	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.73	0.0	0.05	15.84	0.00	2.174	11.69	0.53	4.3	95.7	0.0	-0.08	0.66	0.84	0.82	2.33	26619	3225	39	0	99	0	0	logfile
✔	7PE8	13348	2023-02-27	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.64	0.00	2.179	7.09	0.40	4.0	96.0	0.0	0.66	0.49	0.80	0.83	1.94	29291	3832	8	0	3	0	0	logfile
✔	7Z4W	14509	2023-02-22	2022-03-05	2.7	2.53	—	2.5	0.006	0.89	2.0	0.06	14.33	0.01	2.223	2.01	0.16	3.7	96.2	0.1	-1.99	0.74	0.84	4.49	2.5	0.002	0.56	0.0	0.04	16.68	0.00	2.159	3.71	1.06	3.4	96.6	0.0	1.17	0.83	0.74	0.86	3.88	58942	7242	60	0	0	406	0	logfile
✔	6HS7	0264	2023-02-21	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.72	0.0	0.04	14.05	0.00	2.131	10.58	0.07	7.9	92.1	0.0	-2.30	0.94	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✔	6RFS	4874	2023-02-23	2019-04-16	4.04	4.52	—	4.1	0.010	1.26	0.0	0.94	10.33	0.01	2.078	8.88	0.15	8.3	91.5	0.2	-4.08	0.83	0.83	—	4.1	0.008	1.57	0.0	0.29	11.95	0.00	2.089	15.73	0.00	5.9	94.1	0.0	-0.68	1.38	0.83	0.84	—	60966	7685	49	0	12	0	0	logfile
✔	7UNF	26623	2023-02-25	2022-04-10	4.08	3.35	—	3.5	0.007	0.98	0.0	0.05	15.69	0.01	2.011	4.34	0.27	4.8	95.2	0.0	-5.90	0.66	0.82	—	3.5	0.005	0.71	0.0	0.05	14.92	0.00	2.086	7.46	0.01	5.2	94.8	0.0	-1.08	1.03	0.66	0.83	—	66971	8805	40	0	26	0	0	logfile

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