Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PA7	20281	2022-04-06	2019-06-11	2.94	3.31	—	3.1	0.005	0.80	0.0	0.05	23.66	0.01	2.304	3.72	0.00	3.1	96.9	0.0	-2.99	0.80	0.77	2.57	3.1	0.005	0.73	0.0	0.04	25.97	0.01	2.166	12.09	2.80	3.9	96.1	0.0	0.62	0.85	0.82	0.83	2.74	21019	1770	19	332	3	0	0	logfile
✔	6V1X	21018	2022-04-05	2019-11-21	3.5	3.62	—	3.7	0.013	1.23	4.0	0.07	11.53	0.01	2.279	3.76	0.00	9.5	90.3	0.2	-3.79	0.49	0.59	1.89	3.6	0.002	0.61	0.0	0.04	14.75	0.00	2.181	5.77	0.30	5.6	94.2	0.2	0.93	1.99	0.57	0.80	2.22	13996	1784	8	0	8	0	0	logfile
✔	6YTV	10924	2022-04-06	2020-04-24	4.39	3.96	4.35	3.9	0.004	0.78	0.0	0.04	14.56	0.00	2.183	16.16	0.00	6.0	93.5	0.4	-2.08	0.58	0.76	—	3.9	0.003	0.76	0.0	0.04	14.57	0.00	2.199	12.04	0.00	7.0	92.7	0.2	0.08	1.55	0.56	0.73	—	19560	2520	10	0	0	0	0	logfile
✔	6WB8	21586	2022-04-05	2020-03-26	3.24	3.55	—	3.5	0.011	0.89	0.0	0.05	8.78	0.00	2.124	16.94	0.00	5.9	93.9	0.2	-3.70	0.73	0.79	3.73	3.5	0.004	0.70	0.0	0.04	15.00	0.00	2.111	8.71	0.07	4.5	95.2	0.2	1.29	1.65	0.71	0.85	2.98	14888	1852	8	0	12	0	0	logfile
✔	6Wi9	21683	2022-04-04	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.37	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.004	0.73	0.0	0.04	13.93	0.00	2.087	14.09	0.00	6.6	93.4	0.0	-0.58	0.80	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	6TBU	10452	2022-04-05	2019-11-04	3.16	3.52	—	3.4	0.012	1.50	0.0	0.18	15.74	0.00	1.526	5.99	0.00	5.0	94.9	0.1	-1.99	0.72	0.80	3.61	3.4	0.003	0.71	0.0	0.15	16.40	0.00	2.041	11.12	0.41	4.5	95.5	0.0	1.51	1.12	0.70	0.83	3.46	13733	842	3	0	12	0	6645	logfile
✔	6W18	21503	2022-04-05	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.79	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.1	0.007	0.90	0.0	0.05	13.19	0.01	2.028	17.50	0.09	12.6	87.4	0.0	-2.30	1.61	0.78	0.73	—	13151	1837	9	0	3	0	0	logfile
✔	6M54	30084	2022-04-08	2020-03-09	2.4	2.57	—	2.5	0.012	1.15	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.60	0.0	0.04	17.20	0.00	2.485	0.55	0.25	4.1	95.9	0.0	4.02	0.33	0.81	0.90	3.68	33382	4104	38	0	6	8	0	logfile
✔	6L1U	0803	2022-04-05	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.4	0.007	0.77	0.0	0.05	16.68	0.00	2.152	13.15	1.08	17.3	82.7	0.0	-5.04	1.97	0.48	0.85	2.84	10515	1500	15	0	0	0	0	logfile
✔	6L1T	0801	2022-04-04	2019-09-30	3.22	3.42	—	3.4	0.010	0.74	0.0	0.06	14.17	0.00	2.296	12.89	0.00	12.6	87.4	0.0	-5.37	0.49	0.84	2.71	3.4	0.005	0.71	0.0	0.05	16.26	0.00	2.210	11.36	0.15	10.0	90.0	0.0	-4.00	1.41	0.49	0.86	3.55	7010	1000	10	0	0	0	0	logfile
✔	6U68	20662	2022-04-05	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.002	0.74	0.0	0.05	4.16	0.00	2.318	2.42	0.00	3.8	96.2	0.0	-0.64	1.80	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	6VW2	21410	2022-04-04	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	6WQK	21871	2022-04-04	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	0.47	0.47	0.86	5.39	2070	285	5	0	0	0	0	logfile
✔	6YTo	10920	2022-04-09	2020-04-24	4.24	4.32	4.19	4.3	0.005	0.70	0.0	0.04	13.41	0.00	2.282	10.16	0.00	1.9	98.1	0.0	-0.08	0.67	0.83	—	4.3	0.003	0.63	0.0	0.04	13.55	0.00	2.010	9.02	0.06	2.6	97.4	0.0	2.79	0.73	0.67	0.82	—	41620	5340	20	0	0	0	0	logfile
✔	7CAL	30334	2022-04-05	2020-06-09	3.2	3.36	—	3.3	0.007	1.09	0.0	0.06	14.52	0.01	2.265	2.14	0.00	14.0	85.7	0.2	-6.34	0.71	0.82	3.61	3.3	0.004	0.79	0.0	0.04	15.70	0.01	2.248	6.46	0.43	10.4	89.4	0.2	-1.45	1.52	0.69	0.80	2.63	14064	1776	8	0	4	0	0	logfile
✔	6LRQ	0958	2022-04-04	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	4.1	0.006	0.85	0.0	0.05	14.46	0.00	2.147	19.93	0.74	12.8	87.2	0.0	-3.04	1.58	0.46	0.71	1.16	2628	378	6	0	0	0	0	logfile
✔	7JoA	22409	2022-04-05	2020-08-06	3.3	3.05	—	3.2	0.009	0.78	0.0	0.04	26.00	0.01	2.206	6.32	0.00	6.5	93.5	0.0	-0.33	0.79	0.82	1.49	3.2	0.004	0.61	0.0	0.04	26.32	0.00	2.251	5.78	0.21	2.9	97.1	0.0	1.79	4.78	0.81	0.85	1.66	14994	1125	11	290	1	0	0	logfile
✔	6T7A	10391	2022-04-05	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.75	0.0	0.04	26.72	0.00	2.144	15.79	0.47	1.9	98.1	0.0	2.15	1.75	0.87	0.85	1.33	10338	847	11	190	0	0	0	logfile
✔	6oZC	20224	2022-04-07	2019-05-15	3.79	4.35	—	4.2	0.022	1.83	0.0	0.11	10.38	0.01	2.303	0.99	0.00	3.1	96.2	0.7	0.38	0.79	0.82	2.11	4.2	0.004	0.74	0.0	0.04	14.02	0.01	2.113	12.54	0.23	5.0	94.9	0.1	-0.36	2.07	0.78	0.80	1.50	25821	3027	54	0	186	0	0	logfile
✔	6V93	21115	2022-04-06	2019-12-13	3.1	3.37	—	3.3	0.006	0.74	0.0	0.75	12.61	0.00	2.117	5.79	0.00	7.0	93.0	0.0	-2.84	0.78	0.84	3.32	3.3	0.011	1.47	1.0	0.24	14.52	0.00	2.113	7.50	0.06	7.0	93.0	0.0	-0.50	0.33	0.80	0.86	3.23	18105	2198	14	26	4	220	0	logfile

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