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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6So5 | 10266 | 2024-03-11 | 2019-08-29 | 4.2 | 4.36 | — | 4.2 | 0.005 | 0.82 | 0.0 | 0.04 | 14.99 | 0.01 | 1.973 | 23.55 | 0.00 | 10.2 | 89.8 | 0.0 | -4.60 | 0.68 | 0.79 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 14.23 | 0.01 | 2.216 | 18.06 | 0.00 | 6.4 | 93.6 | 0.0 | -0.35 | 1.21 | 0.67 | 0.78 | — | 8737 | 1097 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 8HBE | 34623 | 2024-03-11 | 2022-10-28 | 3.2 | 3.29 | — | 3.4 | 0.007 | 0.73 | 0.0 | 0.05 | 15.14 | 0.00 | 2.217 | 8.96 | 0.00 | 3.5 | 96.5 | 0.0 | -0.20 | 0.65 | 0.79 | 2.27 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 15.75 | 0.00 | 2.228 | 6.97 | 1.85 | 2.5 | 97.5 | 0.0 | 0.87 | 1.06 | 0.64 | 0.77 | 2.19 | 8610 | 1114 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RHL | 24465 | 2024-03-16 | 2021-07-17 | 3.03 | 2.43 | — | 2.7 | 0.003 | 0.56 | 0.0 | 0.04 | 13.97 | 0.00 | 2.217 | 5.43 | 0.00 | 1.5 | 98.5 | 0.0 | 1.66 | 0.63 | 0.84 | 3.54 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 14.97 | 0.00 | 2.179 | 8.77 | 0.81 | 1.4 | 98.6 | 0.0 | 2.94 | 0.33 | 0.63 | 0.86 | 3.48 | 15371 | 1932 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SQ6 | 25377 | 2024-03-16 | 2021-11-04 | 2.32 | 2.12 | — | 2.3 | 0.007 | 0.81 | 0.0 | 0.06 | 16.32 | 0.00 | 2.408 | 4.99 | 0.00 | 2.8 | 97.2 | 0.0 | 1.57 | 0.69 | 0.88 | 4.86 | 2.3 | 0.003 | 0.53 | 0.0 | 0.04 | 16.27 | 0.00 | 2.238 | 3.30 | 1.67 | 1.6 | 98.4 | 0.0 | 2.30 | 0.92 | 0.70 | 0.90 | 4.76 | 15342 | 1868 | 16 | 0 | 14 | 12 | 0 | logfile |
✔ | 6X3F | 22021 | 2024-03-14 | 2020-05-21 | 3.03 | 3.23 | — | 3.3 | 0.006 | 0.93 | 0.0 | 0.06 | 14.72 | 0.01 | 2.351 | 3.78 | 0.00 | 5.0 | 95.0 | 0.0 | -6.78 | 0.58 | 0.85 | 3.24 | 3.3 | 0.002 | 0.60 | 0.0 | 0.04 | 15.63 | 0.00 | 2.286 | 6.26 | 0.87 | 3.5 | 96.5 | 0.0 | -0.22 | 0.95 | 0.54 | 0.85 | 2.02 | 9366 | 1227 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6X2Z | 22014 | 2024-03-10 | 2020-05-21 | 3.03 | 3.18 | — | 3.2 | 0.005 | 0.84 | 0.0 | 0.05 | 15.51 | 0.01 | 2.131 | 6.52 | 0.00 | 3.6 | 96.4 | 0.0 | -5.65 | 0.44 | 0.86 | 2.63 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 16.01 | 0.00 | 2.170 | 8.94 | 2.27 | 3.1 | 96.9 | 0.0 | 0.83 | 0.95 | 0.43 | 0.86 | 2.22 | 3205 | 420 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 7M6P | 23703 | 2024-03-16 | 2021-03-26 | 3.28 | 3.97 | 3.27 | 3.8 | 0.008 | 1.27 | 5.0 | 0.08 | 12.69 | 0.01 | 2.293 | 5.19 | 0.00 | 3.1 | 96.9 | 0.0 | 0.26 | 0.78 | 0.79 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14650 | 1800 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6F0K | 4165 | 2024-03-24 | 2017-11-20 | 3.87 | 3.98 | — | 3.9 | 0.022 | 1.29 | 0.0 | 0.14 | 11.89 | 0.01 | 1.943 | 8.80 | 0.00 | 14.2 | 85.8 | 0.0 | -5.22 | 0.65 | 0.72 | 1.34 | 3.9 | 0.004 | 0.90 | 0.0 | 0.08 | 15.17 | 0.01 | 1.751 | 18.17 | 1.83 | 12.0 | 88.0 | 0.0 | -3.13 | 1.46 | 0.66 | 0.74 | 1.25 | 39868 | 2504 | 10 | 0 | 10 | 0 | 19577 | logfile |
✔ | 7RHi | 24462 | 2024-03-16 | 2021-07-17 | 3.31 | 3.09 | — | 3.2 | 0.012 | 0.71 | 0.0 | 0.05 | 13.66 | 0.00 | 2.230 | 6.80 | 0.00 | 3.1 | 96.9 | 0.0 | -0.39 | 0.68 | 0.83 | 1.85 | 3.2 | 0.002 | 0.45 | 0.0 | 0.04 | 14.87 | 0.00 | 2.229 | 9.37 | 1.19 | 2.8 | 97.2 | 0.0 | 1.55 | 0.88 | 0.70 | 0.86 | 1.80 | 14717 | 1784 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6W98 | 21580 | 2024-03-15 | 2020-03-22 | 2.9 | 3.47 | 2.92 | 3.3 | 0.010 | 0.86 | 0.0 | 0.05 | 13.56 | 0.01 | 1.990 | 2.62 | 0.00 | 4.4 | 95.6 | 0.1 | -4.30 | 0.67 | 0.84 | 3.77 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 14.37 | 0.00 | 1.296 | 6.69 | 1.91 | 3.9 | 96.1 | 0.0 | -0.08 | 0.47 | 0.65 | 0.84 | 3.03 | 10317 | 1389 | 3 | 0 | 4 | 1 | 0 | logfile |
✔ | 5ooD | 3837 | 2024-03-16 | 2017-08-07 | 3.7 | 3.73 | 3.79 | 3.7 | 0.050 | 3.12 | 0.0 | 0.22 | 18.58 | 0.02 | 1.995 | 7.57 | 0.00 | 5.5 | 92.0 | 2.5 | -1.71 | 0.63 | 0.81 | 2.02 | 3.7 | 0.003 | 1.57 | 0.0 | 0.04 | 19.55 | 0.00 | 1.943 | 17.91 | 2.24 | 4.9 | 94.9 | 0.2 | 0.21 | 1.43 | 0.63 | 0.82 | 1.76 | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 8E9X | 27967 | 2024-03-11 | 2022-08-27 | 2.7 | 2.10 | 2.72 | 1.9 | 0.004 | 0.60 | 0.0 | 0.04 | 12.62 | 0.00 | 2.200 | 6.28 | 0.00 | 4.2 | 95.8 | 0.0 | -0.15 | 0.78 | 0.79 | 3.99 | 1.9 | 0.003 | 0.54 | 0.0 | 0.04 | 15.27 | 0.00 | 2.238 | 6.28 | 2.41 | 3.6 | 96.4 | 0.0 | 0.78 | 0.35 | 0.80 | 0.82 | 3.44 | 8380 | 1109 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6UD3 | 20731 | 2024-03-16 | 2019-09-18 | 3.5 | 4.06 | 3.46 | 3.8 | 0.018 | 1.60 | 0.0 | 0.11 | 12.05 | 0.01 | 2.293 | 7.45 | 0.00 | 4.6 | 95.4 | 0.0 | -1.90 | 0.79 | 0.78 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14346 | 1765 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 8E3X | 27872 | 2024-03-14 | 2022-08-17 | 2.3 | 3.02 | 2.29 | 2.8 | 0.003 | 0.58 | 0.0 | 0.04 | 13.02 | 0.00 | 2.239 | 5.84 | 0.00 | 2.1 | 97.9 | 0.0 | 1.49 | 0.70 | 0.82 | 3.16 | 2.8 | 0.004 | 0.55 | 0.0 | 0.04 | 15.23 | 0.00 | 2.208 | 5.21 | 0.74 | 1.9 | 98.1 | 0.0 | 1.63 | 0.96 | 0.75 | 0.89 | 3.74 | 8979 | 1140 | 8 | 0 | 0 | 11 | 0 | logfile |
✔ | 7Q1U | 13764 | 2024-03-18 | 2021-10-21 | 2.7 | 3.03 | — | 2.9 | 0.006 | 0.56 | 0.0 | 0.13 | 14.38 | 0.00 | 2.136 | 3.87 | 0.00 | 2.7 | 97.3 | 0.0 | 1.71 | 0.74 | 0.83 | 4.08 | 2.9 | 0.004 | 0.51 | 0.0 | 0.04 | 15.81 | 0.00 | 2.112 | 5.01 | 0.70 | 3.1 | 96.9 | 0.0 | 1.57 | 1.16 | 0.74 | 0.85 | 3.81 | 21738 | 1357 | 3 | 0 | 6 | 0 | 10623 | logfile |
✔ | 7oJG | 12950 | 2024-03-16 | 2021-05-14 | 3.4 | 3.72 | — | 3.8 | 0.025 | 2.60 | 0.0 | 0.07 | 26.10 | 0.01 | 1.340 | 2.85 | 0.00 | 1.5 | 98.5 | 0.0 | -2.38 | 0.63 | 0.83 | 3.66 | 3.8 | 0.003 | 0.64 | 0.0 | 0.05 | 18.67 | 0.00 | 2.252 | 1.83 | 7.22 | 3.1 | 96.9 | 0.0 | -0.79 | 0.42 | 0.59 | 0.82 | 3.08 | 13255 | 1518 | 22 | 0 | 66 | 0 | 0 | logfile |
✔ | 6UYE | 20947 | 2024-03-16 | 2019-11-13 | 3.96 | 4.39 | — | 4.3 | 0.010 | 1.11 | 0.0 | 0.06 | 13.38 | 0.01 | 2.260 | 4.79 | 0.00 | 5.7 | 94.3 | 0.0 | -3.06 | 0.77 | 0.81 | 2.44 | 4.3 | 0.004 | 0.77 | 0.0 | 0.05 | 14.25 | 0.00 | 2.118 | 14.36 | 1.84 | 5.5 | 94.5 | 0.0 | -1.03 | 1.69 | 0.77 | 0.81 | 2.32 | 13692 | 1686 | 24 | 0 | 39 | 0 | 0 | logfile |
✔ | 6oPN | 20150 | 2024-03-16 | 2019-04-25 | 3.5 | 4.29 | 3.61 | 3.9 | 0.022 | 1.78 | 0.0 | 0.10 | 12.35 | 0.01 | 2.294 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | 0.59 | 0.70 | 0.73 | 2.02 | 3.9 | 0.004 | 0.74 | 0.0 | 0.04 | 13.48 | 0.00 | 2.166 | 12.13 | 2.71 | 3.6 | 96.4 | 0.0 | -0.20 | 1.34 | 0.70 | 0.73 | 1.32 | 14241 | 1713 | 21 | 0 | 51 | 0 | 0 | logfile |
✔ | 7oP8 | 13014 | 2024-03-11 | 2021-05-31 | 3.5 | 3.85 | — | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 14.44 | 0.01 | 1.950 | 6.41 | 0.00 | 5.6 | 94.4 | 0.0 | -1.73 | 0.66 | 0.77 | 1.18 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.22 | 0.00 | 1.376 | 11.52 | 3.08 | 6.7 | 93.3 | 0.0 | -0.93 | 0.95 | 0.66 | 0.79 | 0.91 | 8872 | 1118 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7B2M | 11988 | 2024-03-19 | 2020-11-27 | 3.39 | 2.21 | 3.36 | 3.0 | 0.003 | 0.49 | 0.0 | 0.04 | 14.43 | 0.00 | 2.009 | 6.54 | 0.00 | 3.6 | 96.4 | 0.0 | -0.15 | 0.72 | 0.72 | 2.60 | 2.1 | 0.004 | 0.60 | 0.0 | 0.04 | 15.90 | 0.00 | 2.056 | 9.68 | 2.84 | 5.5 | 94.5 | 0.0 | -0.61 | 1.22 | 0.72 | 0.74 | 2.75 | 23198 | 1506 | 6 | 0 | 4 | 0 | 11534 | logfile |