Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PLX	20379	2023-02-21	2019-07-01	2.9	3.61	—	3.5	0.010	1.11	0.0	0.06	10.08	0.01	2.316	6.04	0.00	3.2	96.8	0.0	-5.10	0.56	0.83	4.25	3.5	0.003	0.67	0.0	0.04	15.17	0.00	2.169	9.09	2.26	3.2	96.8	0.0	-1.27	0.68	0.53	0.81	3.48	14240	1730	15	0	20	0	0	logfile
✔	7M62	23687	2023-02-16	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.2	0.006	1.03	0.0	0.06	15.73	0.00	2.059	31.10	2.22	26.0	74.0	0.0	-4.94	2.76	0.57	0.68	2.84	2380	320	10	0	10	0	0	logfile
✔	7M61	23686	2023-02-16	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.80	0.0	0.05	14.85	0.00	2.106	21.09	0.00	14.3	85.7	0.0	-4.66	0.84	0.48	0.75	2.97	1690	230	10	0	10	0	0	logfile
✔	7R6L	24281	2023-02-18	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7PDD	13334	2023-02-17	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	20.92	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.79	0.0	0.05	14.04	0.00	2.224	17.90	0.00	5.3	94.7	0.0	-1.20	0.90	0.78	0.72	—	4516	577	2	0	0	0	0	logfile
✔	6PDT	20309	2023-02-27	2019-06-19	3.8	3.95	—	3.9	0.022	2.06	0.0	0.21	11.05	0.01	1.771	0.92	0.00	1.9	97.7	0.4	0.40	0.73	0.73	1.74	3.9	0.003	0.94	0.0	0.04	14.66	0.00	1.789	10.46	0.17	5.8	94.2	0.1	0.67	2.29	0.76	0.78	1.40	31364	2000	8	0	12	0	15636	logfile
✔	6VP9	21307	2023-02-18	2020-02-02	3.46	3.63	—	3.6	0.007	0.83	0.0	0.04	15.37	0.01	2.032	21.68	0.00	9.4	90.6	0.0	-3.63	0.77	0.86	1.78	3.6	0.003	0.62	0.0	0.04	16.83	0.00	2.234	8.46	0.11	6.0	94.0	0.0	-0.28	0.45	0.76	0.86	1.22	8610	1077	4	0	1	0	0	logfile
✔	7AWA	11928	2023-02-17	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	7M64	23688	2023-02-16	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.87	0.0	0.04	11.23	0.00	2.241	5.93	0.00	5.2	94.8	0.0	-3.94	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7PEY	13361	2023-02-21	2021-08-11	4.5	5.20	—	3.8	0.006	0.90	0.0	0.05	29.92	0.01	2.177	7.49	0.00	1.6	98.4	0.0	-0.09	0.89	0.84	—	3.8	0.005	0.68	0.0	0.04	29.92	0.00	2.127	22.29	0.00	3.1	96.9	0.0	1.41	1.31	0.89	0.85	—	13099	768	10	342	0	0	0	logfile
✔	6VW2	21410	2023-02-16	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.004	0.83	0.0	0.05	14.71	0.00	2.227	13.08	0.00	15.5	84.5	0.0	-4.88	0.43	0.39	0.70	1.67	1800	240	10	0	0	0	0	logfile
✔	6N3A	9349	2023-02-17	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.7	0.005	0.90	0.0	0.04	18.94	0.00	2.214	16.77	0.68	10.4	89.6	0.0	-5.19	1.68	0.52	0.79	2.83	4310	600	20	0	0	0	0	logfile
✔	7Z2D	14462	2023-02-18	2022-02-26	3.38	3.18	3.47	3.3	0.006	0.65	0.0	0.04	16.33	0.02	2.187	7.33	0.00	3.9	96.1	0.0	-0.02	0.60	0.69	2.73	3.3	0.004	0.71	0.0	0.04	17.94	0.01	2.231	10.11	0.23	5.3	94.7	0.0	-0.40	0.38	0.60	0.73	2.54	8591	959	4	36	1	0	0	logfile
✔	7K3B	22655	2023-02-23	2020-09-10	3.4	3.49	—	3.4	0.008	0.68	0.0	0.05	12.66	0.00	2.155	8.62	0.00	4.8	95.2	0.0	-0.19	0.82	0.85	3.08	3.4	0.003	0.63	0.0	0.05	14.92	0.00	2.164	10.21	0.29	4.6	95.4	0.0	-0.08	0.59	0.84	0.88	2.90	19038	2394	24	0	51	0	0	logfile
✔	6N3C	0334	2023-02-17	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.005	0.71	0.0	0.04	15.41	0.00	2.401	13.69	1.32	11.3	88.7	0.0	-3.70	2.40	0.52	0.83	3.98	4260	640	20	0	0	0	0	logfile
✔	6DJM	7936	2023-02-20	2018-05-25	3.1	3.26	—	3.2	0.010	1.01	0.0	0.06	10.99	0.01	2.069	3.69	0.00	4.2	95.8	0.0	-4.16	0.67	0.84	3.65	3.2	0.004	0.59	0.0	0.04	15.31	0.00	1.924	8.10	0.16	5.0	95.0	0.0	-0.58	1.26	0.68	0.86	3.03	11768	1488	12	0	8	4	0	logfile
✔	6TBU	10452	2023-02-21	2019-11-04	3.16	3.52	—	3.4	0.012	1.50	0.0	0.18	15.74	0.00	1.526	5.99	0.00	5.0	94.9	0.1	-1.99	0.72	0.80	3.61	3.4	0.004	0.73	0.0	0.15	16.62	0.00	2.048	12.18	0.68	5.1	94.9	0.0	1.36	0.83	0.70	0.84	3.16	13733	842	3	0	12	0	6645	logfile
✔	7R15	14231	2023-02-24	2022-02-02	4.1	4.52	4.27	4.3	0.004	0.53	0.0	0.04	13.81	0.00	2.099	11.10	0.00	6.2	93.8	0.0	-0.90	0.86	0.84	—	4.3	0.003	0.56	0.0	0.04	14.10	0.00	2.141	11.06	0.08	4.9	95.1	0.0	-0.81	0.35	0.85	0.83	—	24100	3000	9	0	43	0	0	logfile
✔	7V4D	31708	2023-02-16	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.003	0.67	0.0	0.05	13.01	0.00	2.208	8.66	0.00	9.2	90.8	0.0	-3.61	1.19	0.42	0.80	4.19	2376	348	6	0	0	0	0	logfile
✘	7K20	22638	2023-02-20	2020-09-08	3.2	3.37	—	3.2	0.013	1.02	0.0	0.06	10.52	0.01	2.141	3.41	0.00	4.5	95.5	0.0	-5.12	0.72	0.87	4.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11828	1488	8	0	12	0	0	logfile

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