Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MUP	9251	2023-02-21	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.79	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.003	0.67	0.0	0.04	26.68	0.00	2.161	10.99	0.59	8.9	91.1	0.0	-1.94	0.78	0.74	0.78	1.36	15803	1224	14	294	0	0	0	logfile
✔	6M23	30061	2023-02-21	2020-02-26	3.2	3.49	—	3.3	0.010	1.11	0.0	0.07	14.80	0.01	2.216	8.01	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.4	0.003	0.78	0.0	0.04	15.74	0.00	2.188	7.43	0.45	10.5	89.0	0.5	-1.56	0.77	0.67	0.83	2.34	14744	1872	12	0	18	2	0	logfile
✔	5LiJ	4054	2023-02-16	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6LR0	31583	2023-02-19	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.43	0.00	2.162	9.47	0.39	6.5	93.5	0.0	-3.41	0.84	0.64	0.75	0.73	9576	1230	1	0	0	0	0	logfile
✔	6YKR	10830	2023-02-19	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.28	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.66	0.0	0.04	16.02	0.00	2.274	7.67	1.02	2.4	97.6	0.0	1.06	1.15	0.67	0.88	3.55	10189	1326	9	0	0	6	0	logfile
✔	6WUN	21917	2023-02-19	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✔	6oVH	20212	2023-02-19	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.88	3.77	10895	1272	36	0	68	171	0	logfile
✔	6V7B	21094	2023-02-22	2019-12-08	3.4	3.51	—	3.4	0.008	0.84	0.0	0.05	16.16	0.01	2.234	4.03	0.11	3.1	96.9	0.0	-6.34	0.58	0.88	2.82	3.4	0.005	0.70	0.0	0.04	17.30	0.00	2.011	11.41	0.56	3.7	96.3	0.0	1.57	0.64	0.58	0.89	2.14	58277	5635	48	646	0	0	0	logfile
✔	7CAL	30334	2023-02-21	2020-06-09	3.2	3.36	—	3.3	0.007	1.09	0.0	0.06	14.52	0.01	2.265	2.29	0.00	14.0	85.7	0.2	-6.34	0.71	0.82	3.61	3.3	0.003	0.73	0.0	0.04	15.59	0.00	2.257	6.17	0.93	10.6	89.1	0.2	-1.85	1.50	0.70	0.82	2.65	14064	1776	8	0	4	0	0	logfile
✔	6TD6	10464	2023-02-21	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.69	0.0	0.04	14.88	0.00	1.903	18.97	0.00	10.5	89.5	0.0	-1.31	1.44	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	7SHM	25130	2023-02-19	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.18	0.01	2.322	4.99	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.65	0.0	0.04	16.61	0.00	2.183	8.83	0.31	4.1	95.9	0.0	0.17	0.59	0.62	0.84	2.66	9186	1142	4	0	2	0	0	logfile
✔	6o6A	0631	2023-02-26	2019-03-05	3.6	3.69	—	3.6	0.008	0.99	0.0	0.06	15.67	0.01	1.986	6.27	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.004	0.78	0.0	0.04	17.50	0.00	2.099	13.84	0.91	7.8	92.2	0.0	-1.00	2.51	0.62	0.78	1.17	27220	3312	8	0	8	0	0	logfile
✔	6VoY	21301	2023-02-22	2020-02-01	3.7	4.09	—	4.0	0.013	1.52	30.0	0.10	24.39	0.01	1.583	35.03	0.46	2.4	97.6	0.0	-6.32	0.69	0.82	2.12	4.0	0.004	0.97	0.0	0.05	24.50	0.00	1.926	19.23	0.33	12.2	87.7	0.1	-2.68	1.13	0.67	0.79	1.17	17556	1724	16	180	6	0	0	logfile
✔	6F2D	4173	2023-02-20	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.29	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.003	0.89	0.0	0.04	12.97	0.01	2.156	12.99	0.00	7.5	91.9	0.6	0.19	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile
✔	5XB1	6714	2023-02-27	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.34	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.003	0.56	0.0	0.04	17.97	0.00	2.170	3.09	3.33	2.9	97.1	0.0	3.51	0.68	0.79	0.86	2.76	30847	3720	48	0	0	55	0	logfile
✔	6WTD	21894	2023-02-19	2020-05-02	4.2	4.24	—	4.2	0.007	1.17	0.0	0.06	15.33	0.01	2.208	7.39	0.86	7.2	92.8	0.0	-6.31	0.56	0.74	—	4.2	0.003	0.82	0.0	0.04	13.36	0.00	2.160	13.12	0.00	3.9	96.1	0.0	-2.14	1.95	0.55	0.71	—	9139	1233	16	0	0	0	0	logfile
✔	6HCY	0199	2023-02-19	2018-08-17	3.1	3.48	3.04	3.4	0.015	1.26	0.0	0.06	13.92	0.01	2.017	2.66	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	3.4	0.003	0.65	0.0	0.04	14.75	0.00	2.149	6.50	0.35	5.0	95.0	0.0	0.33	1.75	0.71	0.91	3.33	11007	1308	6	0	15	0	0	logfile
✔	6VHL	21207	2023-02-16	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.003	0.76	0.0	0.04	16.24	0.00	2.321	8.71	0.00	8.7	91.3	0.0	-3.58	2.81	0.26	0.69	3.41	1190	158	4	0	0	0	0	logfile
✔	7AAV	11693	2023-02-25	2020-09-04	4.2	4.27	—	4.1	0.003	0.78	0.0	0.15	12.59	0.01	2.116	1.53	0.18	8.9	91.1	0.1	-6.29	0.76	0.77	—	4.1	0.005	0.77	0.0	0.05	13.56	0.00	1.779	7.80	0.00	14.8	85.2	0.0	-1.34	0.53	0.78	0.80	—	25867	3970	19	181	3	0	0	logfile
✔	7EEP	31079	2023-02-26	2021-03-19	3.75	3.62	—	3.7	0.009	1.20	0.0	0.07	11.99	0.01	2.267	3.30	1.19	10.3	89.6	0.1	-6.29	0.63	0.84	2.90	3.7	0.003	0.73	0.0	0.04	16.01	0.00	2.097	7.61	0.51	7.9	92.1	0.0	-3.35	1.23	0.61	0.83	2.06	68076	8532	24	0	0	0	0	logfile

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