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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GAH | 29899 | 2024-03-11 | 2023-02-22 | 2.9 | 3.08 | 2.95 | 3.1 | 0.005 | 0.88 | 0.0 | 0.05 | 13.56 | 0.01 | 2.280 | 4.27 | 0.00 | 5.9 | 94.1 | 0.0 | -6.49 | 0.65 | 0.83 | 3.19 | 3.1 | 0.004 | 0.70 | 0.0 | 0.04 | 15.43 | 0.00 | 2.187 | 9.69 | 2.34 | 4.8 | 95.2 | 0.0 | -0.06 | 0.47 | 0.63 | 0.84 | 2.90 | 6424 | 864 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2024-03-11 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.65 | 0.0 | 0.16 | 17.58 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 18.28 | 0.00 | 2.116 | 10.99 | 4.34 | 8.5 | 91.4 | 0.1 | -1.97 | 2.11 | 0.67 | 0.83 | 1.16 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6ZH3 | 11212 | 2024-03-25 | 2020-06-20 | 3.2 | 3.36 | 3.25 | 3.3 | 0.008 | 0.98 | 0.0 | 0.05 | 14.14 | 0.00 | 2.307 | 3.61 | 0.64 | 2.4 | 96.4 | 1.2 | -6.47 | 0.73 | 0.80 | 1.66 | 3.3 | 0.005 | 0.74 | 2.0 | 0.04 | 17.88 | 0.00 | 2.130 | 12.35 | 2.14 | 3.0 | 96.4 | 0.6 | 1.02 | 0.73 | 0.77 | 0.85 | 0.92 | 49716 | 6120 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 5o3T | 3743 | 2024-03-15 | 2017-05-24 | 3.4 | 3.55 | 3.25 | 4.0 | 0.007 | 0.92 | 0.0 | 0.06 | 10.15 | 0.01 | 2.301 | 14.44 | 1.56 | 14.1 | 85.9 | 0.0 | -6.47 | 0.53 | 0.63 | 2.13 | 3.5 | 0.003 | 0.65 | 0.0 | 0.05 | 13.14 | 0.00 | 2.115 | 11.97 | 2.19 | 12.7 | 87.3 | 0.0 | -4.91 | 1.53 | 0.52 | 0.73 | 2.97 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 6X2L | 22011 | 2024-03-14 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 15.75 | 0.00 | 2.273 | 5.83 | 2.22 | 2.2 | 97.8 | 0.0 | 1.99 | 1.00 | 0.61 | 0.89 | 2.26 | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NCV | 0438 | 2024-03-16 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 18.53 | 0.00 | 2.095 | 7.36 | 2.94 | 5.8 | 94.2 | 0.0 | -0.64 | 2.47 | 0.75 | 0.86 | 1.37 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2024-03-10 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.64 | 0.0 | 0.05 | 15.65 | 0.00 | 2.268 | 13.24 | 8.85 | 16.0 | 84.0 | 0.0 | -4.39 | 2.81 | 0.38 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ALW | 11820 | 2024-03-25 | 2020-10-07 | 3.7 | 3.77 | 3.62 | 3.7 | 0.010 | 0.96 | 0.0 | 0.05 | 15.64 | 0.00 | 2.150 | 15.88 | 0.98 | 17.3 | 82.4 | 0.3 | -6.45 | 0.81 | 0.86 | 2.68 | 3.7 | 0.005 | 0.79 | 0.0 | 0.05 | 17.97 | 0.00 | 2.163 | 12.82 | 3.01 | 9.9 | 89.8 | 0.3 | -2.58 | 1.00 | 0.80 | 0.85 | 1.75 | 50148 | 6192 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Kio | 9996 | 2024-03-16 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 17.25 | 0.00 | 1.970 | 12.13 | 2.04 | 7.8 | 91.8 | 0.4 | -1.24 | 1.67 | 0.65 | 0.78 | 1.27 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 6LZ3 | 30022 | 2024-03-16 | 2020-02-18 | 3.2 | 3.37 | 3.26 | 3.3 | 0.007 | 1.20 | 0.0 | 0.06 | 17.57 | 0.01 | 2.201 | 4.66 | 3.86 | 8.7 | 90.9 | 0.4 | -6.45 | 0.80 | 0.81 | 2.16 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.93 | 0.00 | 2.072 | 9.61 | 2.90 | 8.1 | 91.9 | 0.0 | -2.06 | 0.67 | 0.80 | 0.83 | 2.60 | 15968 | 1944 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2024-03-16 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 19.90 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.96 | 0.00 | 2.246 | 7.53 | 1.92 | 8.3 | 91.7 | 0.0 | -0.49 | 0.68 | 0.62 | 0.82 | 2.17 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7E1A | 30938 | 2024-03-14 | 2021-02-01 | 3.66 | 4.00 | — | 3.9 | 0.012 | 1.39 | 0.0 | 0.07 | 13.32 | 0.01 | 2.233 | 7.56 | 0.81 | 11.6 | 88.3 | 0.1 | -6.43 | 0.63 | 0.78 | 1.89 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 15.87 | 0.00 | 2.165 | 11.48 | 3.24 | 7.0 | 93.0 | 0.0 | -3.46 | 1.34 | 0.63 | 0.78 | 1.10 | 9284 | 1189 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 8SiA | 40504 | 2024-03-17 | 2023-04-14 | 2.91 | 3.13 | 3.00 | 3.1 | 0.013 | 1.24 | 0.0 | 0.09 | 19.00 | 0.01 | 1.993 | 5.03 | 0.72 | 14.5 | 85.0 | 0.5 | -6.42 | 0.61 | 0.69 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74681 | 4420 | 8 | 0 | 65 | 0 | 36144 | logfile |
✔ | 6VXH | 21437 | 2024-03-11 | 2020-02-21 | 4.0 | 4.27 | — | 4.2 | 0.006 | 1.07 | 0.0 | 0.06 | 16.22 | 0.01 | 2.245 | 5.74 | 0.31 | 9.9 | 89.9 | 0.2 | -6.42 | 0.65 | 0.82 | — | 4.2 | 0.006 | 0.83 | 0.0 | 0.05 | 17.08 | 0.00 | 2.144 | 12.87 | 5.72 | 12.2 | 87.8 | 0.0 | -2.96 | 0.60 | 0.65 | 0.83 | — | 8879 | 1130 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6A70 | 6991 | 2024-03-16 | 2018-06-29 | 3.6 | 4.21 | — | 3.7 | 0.009 | 1.20 | 0.0 | 0.06 | 12.37 | 0.01 | 2.200 | 4.77 | 1.28 | 9.2 | 90.7 | 0.1 | -6.41 | 0.52 | 0.57 | 0.70 | 3.7 | 0.003 | 0.79 | 0.0 | 0.04 | 14.79 | 0.00 | 2.220 | 8.87 | 2.49 | 5.3 | 94.7 | 0.0 | -0.91 | 2.46 | 0.57 | 0.71 | 0.71 | 15142 | 2086 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SHN | 25131 | 2024-03-14 | 2021-10-09 | 3.1 | 3.32 | — | 3.3 | 0.017 | 1.35 | 6.0 | 0.08 | 16.38 | 0.01 | 2.330 | 8.40 | 0.20 | 3.5 | 96.5 | 0.0 | -6.40 | 0.65 | 0.84 | 2.48 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 16.78 | 0.00 | 2.131 | 9.70 | 2.95 | 3.2 | 96.8 | 0.0 | -0.02 | 0.60 | 0.67 | 0.87 | 1.71 | 9677 | 1171 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 7F92 | 31495 | 2024-03-18 | 2021-07-03 | 3.1 | 3.23 | 3.05 | 3.2 | 0.008 | 1.29 | 0.0 | 0.05 | 16.75 | 0.01 | 2.271 | 0.63 | 2.29 | 3.0 | 97.0 | 0.0 | -6.40 | 0.75 | 0.90 | 3.09 | 3.2 | 0.002 | 0.53 | 0.0 | 0.03 | 15.33 | 0.00 | 2.288 | 1.12 | 1.81 | 1.2 | 98.8 | 0.0 | 1.39 | 0.30 | 0.72 | 0.90 | 2.63 | 21240 | 2352 | 36 | 0 | 132 | 264 | 0 | logfile |
✔ | 7N88 | 24233 | 2024-03-14 | 2021-06-14 | 3.7 | 3.90 | — | 3.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.40 | 0.01 | 1.680 | 28.91 | 0.81 | 21.4 | 78.3 | 0.2 | -6.39 | 0.74 | 0.73 | 1.71 | 3.9 | 0.004 | 0.80 | 0.0 | 0.04 | 16.73 | 0.00 | 1.903 | 17.41 | 4.98 | 13.7 | 86.3 | 0.0 | -3.67 | 0.51 | 0.73 | 0.71 | 1.56 | 9402 | 1220 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 6LTN | 0975 | 2024-03-16 | 2020-01-23 | 3.1 | 3.48 | 3.04 | 3.5 | 0.006 | 0.95 | 0.0 | 0.05 | 16.29 | 0.01 | 2.254 | 2.43 | 1.38 | 4.7 | 95.3 | 0.0 | -6.39 | 0.65 | 0.79 | 2.98 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.36 | 0.01 | 2.252 | 9.49 | 4.52 | 3.3 | 96.7 | 0.0 | 0.11 | 1.63 | 0.65 | 0.81 | 2.99 | 13615 | 1708 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RBG | 4798 | 2024-03-17 | 2019-04-10 | 3.0 | 3.55 | — | 3.4 | 0.004 | 0.89 | 0.0 | 0.05 | 14.50 | 0.00 | 2.407 | 3.44 | 0.38 | 2.0 | 98.0 | 0.0 | -6.39 | 0.67 | 0.80 | 3.37 | 3.4 | 0.002 | 0.64 | 0.0 | 0.04 | 17.20 | 0.00 | 2.322 | 4.56 | 2.04 | 1.3 | 98.7 | 0.0 | 0.47 | 0.54 | 0.72 | 0.85 | 2.35 | 19336 | 2464 | 8 | 0 | 0 | 0 | 0 | logfile |