Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o6A	0631	2023-07-12	2019-03-05	3.6	3.69	—	3.6	0.008	0.99	0.0	0.06	15.67	0.01	1.986	6.42	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.004	0.78	0.0	0.04	17.50	0.00	2.099	13.95	0.91	7.8	92.2	0.0	-1.00	2.51	0.62	0.78	1.17	27220	3312	8	0	8	0	0	logfile
✔	7SHM	25130	2023-07-05	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.18	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.65	0.0	0.04	16.61	0.00	2.183	8.94	0.31	4.1	95.9	0.0	0.17	0.59	0.62	0.84	2.66	9186	1142	4	0	2	0	0	logfile
✔	7DHR	30682	2023-07-04	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	3.92	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.002	0.61	0.0	0.04	15.36	0.00	2.231	7.99	0.77	5.7	94.3	0.0	-3.21	0.46	0.69	0.76	1.86	7057	977	5	0	1	0	0	logfile
✔	6F2D	4173	2023-07-06	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.29	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.003	0.89	0.0	0.04	13.03	0.01	2.125	12.83	0.00	7.7	91.7	0.6	0.23	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile
✘	6VoY	21301	2023-07-08	2020-02-01	3.7	4.09	—	4.0	0.013	1.52	30.0	0.10	24.39	0.01	1.583	35.03	0.46	2.4	97.6	0.0	-6.32	0.69	0.82	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17556	1724	16	180	6	0	0	logfile
✔	6WTD	21894	2023-07-05	2020-05-02	4.2	4.24	—	4.2	0.007	1.17	0.0	0.06	15.33	0.01	2.208	7.39	0.86	7.2	92.8	0.0	-6.31	0.56	0.74	—	4.2	0.003	0.82	0.0	0.04	13.36	0.00	2.160	13.12	0.00	3.9	96.1	0.0	-2.14	1.95	0.55	0.71	—	9139	1233	16	0	0	0	0	logfile
✔	6HCY	0199	2023-07-06	2018-08-17	3.1	3.48	3.04	3.4	0.015	1.26	0.0	0.06	13.94	0.01	2.017	2.66	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	3.4	0.003	0.66	0.0	0.04	14.75	0.00	2.142	6.41	0.26	4.5	95.5	0.0	0.32	1.75	0.71	0.91	3.40	11007	1308	6	0	15	0	0	logfile
✔	7AAV	11693	2023-07-12	2020-09-04	4.2	4.27	—	4.1	0.003	0.78	0.0	0.15	12.59	0.01	2.116	1.53	0.18	8.9	91.1	0.1	-6.29	0.76	0.77	—	4.1	0.005	0.77	0.0	0.05	13.56	0.00	1.779	7.80	0.00	14.8	85.2	0.0	-1.34	0.53	0.78	0.80	—	25867	3970	19	181	3	0	0	logfile
✔	6M02	30028	2023-07-09	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.35	0.01	2.263	6.38	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.003	0.69	0.0	0.04	17.04	0.00	2.284	10.32	0.52	4.1	95.9	0.0	-1.79	1.20	0.61	0.71	1.40	18935	2345	7	0	0	0	0	logfile
✔	6P49	20247	2023-07-05	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.26	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.003	0.80	0.0	0.04	17.07	0.01	2.120	15.81	0.19	9.8	90.2	0.0	-3.13	1.76	0.54	0.59	0.81	9576	1166	4	0	2	0	0	logfile
✔	7CYF	30499	2023-07-06	2020-09-03	3.15	2.98	—	3.3	0.009	1.28	5.0	0.07	11.57	0.01	1.890	5.78	1.90	9.3	90.7	0.0	-6.27	0.61	0.83	4.14	3.2	0.003	0.76	0.0	0.04	15.09	0.00	2.092	7.60	0.48	6.2	93.8	0.0	-0.61	1.22	0.62	0.85	2.26	9996	1329	12	0	6	0	0	logfile
✔	7E5Z	30995	2023-07-09	2021-02-21	3.6	3.29	3.74	3.5	0.005	0.91	1.0	0.05	14.26	0.01	1.908	21.03	0.57	10.2	89.7	0.1	-6.25	0.83	0.78	1.73	3.6	0.003	0.62	0.0	0.04	15.73	0.00	1.909	13.20	0.29	9.6	90.4	0.0	-2.27	1.40	0.83	0.80	1.72	19054	1312	4	0	10	0	8810	logfile
✔	6o72	0638	2023-07-13	2019-03-07	3.0	3.18	—	3.2	0.009	1.20	0.0	0.06	15.63	0.01	2.062	8.40	0.00	7.4	92.6	0.0	-6.25	0.63	0.80	2.52	3.2	0.004	0.78	0.0	0.04	17.76	0.00	2.173	13.34	2.18	6.9	93.1	0.0	-0.08	0.76	0.63	0.81	2.09	28592	3432	8	0	28	0	0	logfile
✔	7Y9T	33691	2023-07-04	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.305	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.003	0.67	0.0	0.04	13.62	0.00	2.220	5.37	0.36	4.5	95.5	0.0	-1.47	0.59	0.67	0.87	3.20	7726	992	4	0	0	0	0	logfile
✔	7V2Y	31670	2023-07-11	2021-08-10	3.4	3.56	—	3.5	0.005	0.96	0.0	0.05	16.29	0.01	2.276	3.85	0.34	7.5	92.4	0.1	-6.23	0.69	0.78	2.04	3.5	0.004	0.71	0.0	0.04	17.53	0.00	2.158	10.47	0.34	7.7	92.2	0.0	-1.81	1.26	0.70	0.81	1.61	23097	2846	6	0	0	0	0	logfile
✔	6CAA	7441	2023-07-04	2018-01-29	3.9	3.97	—	3.9	0.009	1.33	0.0	0.07	12.41	0.01	1.886	9.42	0.00	13.0	87.0	0.0	-6.23	0.64	0.79	1.91	3.9	0.003	0.85	0.0	0.04	15.65	0.00	2.145	12.63	0.25	11.7	88.3	0.0	-1.27	2.14	0.66	0.79	1.54	7508	954	2	0	0	0	0	logfile
✔	7Y9U	33692	2023-07-04	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.27	2.0	0.06	9.98	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.003	0.63	0.0	0.04	13.73	0.00	2.158	4.60	0.24	3.6	96.4	0.0	-1.82	0.62	0.59	0.84	2.56	7748	988	6	0	2	0	0	logfile
✔	6DWB	8924	2023-07-09	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✔	7KoG	22975	2023-07-08	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.1	0.003	0.78	0.0	0.04	16.94	0.00	2.101	12.44	0.00	0.6	99.4	0.0	2.86	1.99	0.74	0.74	—	17384	2154	2	0	0	0	0	logfile
✔	7CH0	30367	2023-07-08	2020-07-03	3.7	3.78	—	3.8	0.008	1.11	0.0	0.06	16.08	0.01	1.910	4.94	6.24	10.7	89.0	0.2	-6.21	0.64	0.83	2.02	3.8	0.004	0.72	0.0	0.04	15.81	0.00	2.147	7.53	0.54	8.9	91.1	0.0	-2.48	1.66	0.66	0.84	1.77	15856	2092	14	0	2	0	0	logfile

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