Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5JUo	6648	2022-04-20	2016-05-10	4.0	4.65	—	3.6	0.021	1.30	0.0	0.15	17.54	0.01	1.298	41.70	10.58	20.9	71.5	7.6	-6.44	0.72	0.53	—	3.5	0.006	0.88	2.0	0.04	17.83	0.01	1.526	27.98	0.22	13.8	85.2	1.0	-4.08	0.75	0.81	0.69	—	215363	12391	84	5568	2	0	0	logfile
✔	7E1A	30938	2022-04-04	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.76	0.0	0.04	15.82	0.00	2.217	9.76	0.40	6.3	93.7	0.0	-2.97	1.36	0.62	0.77	1.46	9284	1189	1	0	1	0	0	logfile
✔	6VXH	21437	2022-04-04	2020-02-21	4.0	4.27	—	4.2	0.006	1.07	0.0	0.06	15.59	0.01	2.245	5.74	0.31	9.9	89.9	0.2	-6.42	0.65	0.82	—	4.2	0.008	0.94	0.0	0.05	17.25	0.01	2.110	13.26	0.73	12.7	87.3	0.1	-3.21	0.60	0.66	0.83	—	8879	1130	4	0	3	0	0	logfile
✔	5JUT	6646	2022-04-19	2016-05-10	4.0	4.62	—	3.9	0.019	1.26	2.0	0.14	17.34	0.01	2.191	40.18	10.31	20.7	71.5	7.8	-6.42	0.78	0.60	—	3.7	0.004	0.81	0.0	0.04	17.86	0.01	1.897	29.80	0.67	13.6	85.4	1.0	-3.54	1.06	0.85	0.77	—	215222	12374	84	5568	2	0	0	logfile
✔	6A70	6991	2022-04-05	2018-06-29	3.6	4.21	—	3.7	0.009	1.20	0.0	0.06	12.37	0.01	2.200	4.77	1.28	9.2	90.7	0.1	-6.41	0.52	0.57	0.70	3.7	0.003	0.82	0.0	0.04	14.49	0.00	2.180	10.82	0.30	6.5	93.5	0.0	-1.23	1.19	0.57	0.72	0.86	15142	2086	4	0	0	0	0	logfile
✔	5VLY	8708	2022-04-12	2017-04-26	3.3	3.50	—	3.5	0.008	0.95	0.0	0.06	9.15	0.01	0.762	33.12	0.00	8.0	92.0	0.0	-6.40	0.59	0.75	2.98	3.5	0.006	0.83	0.0	0.05	13.41	0.00	2.204	13.30	0.21	4.9	95.1	0.0	-4.35	0.64	0.69	0.82	2.15	171720	23280	180	0	0	0	0	logfile
✔	7SHN	25131	2022-04-04	2021-10-09	3.1	3.32	—	3.3	0.017	1.34	6.0	0.08	16.25	0.01	2.330	8.30	0.20	3.5	96.5	0.0	-6.40	0.65	0.84	2.48	3.3	0.005	0.74	0.0	0.04	16.74	0.01	2.236	9.49	0.41	3.5	96.5	0.0	0.03	0.63	0.63	0.85	1.59	9677	1171	4	0	44	0	0	logfile
✔	6RBG	4798	2022-04-06	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.63	0.0	0.04	17.29	0.00	2.160	4.94	1.24	1.3	98.7	0.0	0.69	0.57	0.70	0.83	2.57	19336	2464	8	0	0	0	0	logfile
✔	6LTN	0975	2022-04-05	2020-01-23	3.1	3.48	3.04	3.5	0.006	0.95	0.0	0.05	16.29	0.01	2.254	2.43	1.38	4.7	95.3	0.0	-6.39	0.65	0.79	2.98	3.4	0.005	0.80	0.0	0.04	17.20	0.01	2.206	8.80	0.52	3.8	96.2	0.0	-0.05	1.99	0.66	0.81	3.05	13615	1708	7	0	0	0	0	logfile
✔	7N88	24233	2022-04-04	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.85	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.005	0.87	1.0	0.04	16.65	0.01	1.934	16.32	0.41	13.2	86.8	0.1	-3.51	0.56	0.72	0.70	1.39	9402	1220	2	0	4	0	0	logfile
✔	5JUU	6647	2022-04-19	2016-05-10	4.0	4.43	—	3.8	0.019	1.27	0.0	0.14	17.36	0.01	2.266	40.34	11.11	19.9	72.8	7.3	-6.38	0.79	0.65	—	3.6	0.006	0.81	2.0	0.04	17.56	0.01	1.525	24.47	0.27	11.4	87.6	0.9	-2.84	0.66	0.85	0.79	—	215045	12374	84	5566	2	0	0	logfile
✔	6A91	6996	2022-04-05	2018-07-11	3.2	3.32	—	3.3	0.009	1.14	0.0	0.06	12.44	0.01	2.238	6.00	1.22	7.8	91.6	0.6	-6.38	0.60	0.82	4.21	3.3	0.003	0.64	0.0	0.04	15.51	0.00	2.181	5.10	0.61	7.1	92.7	0.1	-1.10	0.72	0.65	0.86	2.53	11182	1380	4	0	10	3	0	logfile
✔	6K1H	9906	2022-04-05	2019-05-10	3.52	3.52	—	3.6	0.007	1.14	0.0	0.06	9.94	0.01	2.051	6.10	0.75	10.6	89.4	0.0	-6.37	0.60	0.77	2.05	3.5	0.005	0.83	0.0	0.04	15.20	0.00	2.057	13.65	0.83	9.5	90.5	0.0	-2.57	1.68	0.62	0.80	1.73	11556	1533	9	0	3	0	0	logfile
✔	5TJ5	8409	2022-04-05	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.74	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.2	0.011	1.19	1.0	0.04	12.98	0.01	1.606	20.38	0.73	7.0	92.7	0.2	0.14	1.73	0.63	0.74	1.50	14976	2102	14	0	365	0	0	logfile
✔	6MUP	9251	2022-04-05	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.79	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.003	0.68	0.0	0.03	26.66	0.00	2.120	11.50	0.20	7.9	92.1	0.0	-1.78	0.79	0.73	0.78	1.02	15803	1224	14	294	0	0	0	logfile
✔	5LiJ	4054	2022-04-04	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.61	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.82	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6M23	30061	2022-04-05	2020-02-26	3.2	3.49	—	3.3	0.010	1.09	0.0	0.07	15.14	0.01	2.216	8.01	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.3	0.003	0.78	0.0	0.04	15.97	0.00	2.138	8.14	0.00	10.0	89.5	0.4	-1.49	0.78	0.67	0.83	2.08	14744	1872	12	0	18	2	0	logfile
✔	6WUN	21917	2022-04-05	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.83	0.0	0.04	14.96	0.00	2.101	13.17	0.09	17.2	82.6	0.2	-4.00	0.56	0.68	0.80	1.50	10082	1326	4	0	0	0	0	logfile
✔	6LR0	31583	2022-04-04	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.72	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.010	1.31	0.0	0.04	15.66	0.01	2.009	12.54	0.39	7.0	92.9	0.1	-3.96	0.82	0.63	0.75	1.26	9576	1230	1	0	0	0	0	logfile
✔	6YKR	10830	2022-04-05	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.28	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.67	0.0	0.04	16.26	0.00	2.265	7.76	0.93	2.4	97.6	0.0	1.12	0.80	0.69	0.88	3.46	10189	1326	9	0	0	6	0	logfile

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