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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6o6A | 0631 | 2023-07-12 | 2019-03-05 | 3.6 | 3.69 | — | 3.6 | 0.008 | 0.99 | 0.0 | 0.06 | 15.67 | 0.01 | 1.986 | 6.42 | 0.00 | 7.4 | 92.6 | 0.0 | -6.33 | 0.60 | 0.77 | 2.17 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 17.50 | 0.00 | 2.099 | 13.95 | 0.91 | 7.8 | 92.2 | 0.0 | -1.00 | 2.51 | 0.62 | 0.78 | 1.17 | 27220 | 3312 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7SHM | 25130 | 2023-07-05 | 2021-10-09 | 3.14 | 3.35 | — | 3.4 | 0.006 | 1.17 | 3.0 | 0.06 | 15.18 | 0.01 | 2.322 | 5.09 | 0.21 | 3.0 | 97.0 | 0.0 | -6.33 | 0.64 | 0.82 | 2.64 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 16.61 | 0.00 | 2.183 | 8.94 | 0.31 | 4.1 | 95.9 | 0.0 | 0.17 | 0.59 | 0.62 | 0.84 | 2.66 | 9186 | 1142 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7DHR | 30682 | 2023-07-04 | 2020-11-17 | 3.8 | 3.96 | — | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 14.18 | 0.01 | 2.329 | 3.92 | 0.31 | 9.1 | 90.8 | 0.1 | -6.33 | 0.70 | 0.77 | 3.13 | 3.9 | 0.002 | 0.61 | 0.0 | 0.04 | 15.36 | 0.00 | 2.231 | 7.99 | 0.77 | 5.7 | 94.3 | 0.0 | -3.21 | 0.46 | 0.69 | 0.76 | 1.86 | 7057 | 977 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6F2D | 4173 | 2023-07-06 | 2017-11-24 | 4.2 | 4.27 | 4.05 | 4.1 | 0.010 | 1.19 | 0.0 | 0.05 | 9.30 | 0.01 | 2.023 | 26.29 | 0.51 | 16.3 | 83.0 | 0.7 | -6.32 | 0.71 | 0.72 | — | 4.1 | 0.003 | 0.89 | 0.0 | 0.04 | 13.03 | 0.01 | 2.125 | 12.83 | 0.00 | 7.7 | 91.7 | 0.6 | 0.23 | 2.03 | 0.75 | 0.77 | — | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VoY | 21301 | 2023-07-08 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.39 | 0.01 | 1.583 | 35.03 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✔ | 6WTD | 21894 | 2023-07-05 | 2020-05-02 | 4.2 | 4.24 | — | 4.2 | 0.007 | 1.17 | 0.0 | 0.06 | 15.33 | 0.01 | 2.208 | 7.39 | 0.86 | 7.2 | 92.8 | 0.0 | -6.31 | 0.56 | 0.74 | — | 4.2 | 0.003 | 0.82 | 0.0 | 0.04 | 13.36 | 0.00 | 2.160 | 13.12 | 0.00 | 3.9 | 96.1 | 0.0 | -2.14 | 1.95 | 0.55 | 0.71 | — | 9139 | 1233 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HCY | 0199 | 2023-07-06 | 2018-08-17 | 3.1 | 3.48 | 3.04 | 3.4 | 0.015 | 1.26 | 0.0 | 0.06 | 13.94 | 0.01 | 2.017 | 2.66 | 0.79 | 6.2 | 93.8 | 0.0 | -6.30 | 0.67 | 0.89 | 5.10 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.75 | 0.00 | 2.142 | 6.41 | 0.26 | 4.5 | 95.5 | 0.0 | 0.32 | 1.75 | 0.71 | 0.91 | 3.40 | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 7AAV | 11693 | 2023-07-12 | 2020-09-04 | 4.2 | 4.27 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.15 | 12.59 | 0.01 | 2.116 | 1.53 | 0.18 | 8.9 | 91.1 | 0.1 | -6.29 | 0.76 | 0.77 | — | 4.1 | 0.005 | 0.77 | 0.0 | 0.05 | 13.56 | 0.00 | 1.779 | 7.80 | 0.00 | 14.8 | 85.2 | 0.0 | -1.34 | 0.53 | 0.78 | 0.80 | — | 25867 | 3970 | 19 | 181 | 3 | 0 | 0 | logfile |
✔ | 6M02 | 30028 | 2023-07-09 | 2020-02-19 | 3.2 | 3.49 | 3.90 | 3.9 | 0.006 | 0.96 | 0.0 | 0.05 | 16.35 | 0.01 | 2.263 | 6.38 | 1.64 | 7.0 | 93.0 | 0.0 | -6.29 | 0.60 | 0.70 | 1.57 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 17.04 | 0.00 | 2.284 | 10.32 | 0.52 | 4.1 | 95.9 | 0.0 | -1.79 | 1.20 | 0.61 | 0.71 | 1.40 | 18935 | 2345 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P49 | 20247 | 2023-07-05 | 2019-05-26 | 3.3 | 3.60 | 3.10 | 3.6 | 0.007 | 1.50 | 0.0 | 0.08 | 16.18 | 0.01 | 2.164 | 18.26 | 3.28 | 6.9 | 92.4 | 0.7 | -6.27 | 0.54 | 0.57 | 1.13 | 3.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.07 | 0.01 | 2.120 | 15.81 | 0.19 | 9.8 | 90.2 | 0.0 | -3.13 | 1.76 | 0.54 | 0.59 | 0.81 | 9576 | 1166 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CYF | 30499 | 2023-07-06 | 2020-09-03 | 3.15 | 2.98 | — | 3.3 | 0.009 | 1.28 | 5.0 | 0.07 | 11.57 | 0.01 | 1.890 | 5.78 | 1.90 | 9.3 | 90.7 | 0.0 | -6.27 | 0.61 | 0.83 | 4.14 | 3.2 | 0.003 | 0.76 | 0.0 | 0.04 | 15.09 | 0.00 | 2.092 | 7.60 | 0.48 | 6.2 | 93.8 | 0.0 | -0.61 | 1.22 | 0.62 | 0.85 | 2.26 | 9996 | 1329 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7E5Z | 30995 | 2023-07-09 | 2021-02-21 | 3.6 | 3.29 | 3.74 | 3.5 | 0.005 | 0.91 | 1.0 | 0.05 | 14.26 | 0.01 | 1.908 | 21.03 | 0.57 | 10.2 | 89.7 | 0.1 | -6.25 | 0.83 | 0.78 | 1.73 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 15.73 | 0.00 | 1.909 | 13.20 | 0.29 | 9.6 | 90.4 | 0.0 | -2.27 | 1.40 | 0.83 | 0.80 | 1.72 | 19054 | 1312 | 4 | 0 | 10 | 0 | 8810 | logfile |
✔ | 6o72 | 0638 | 2023-07-13 | 2019-03-07 | 3.0 | 3.18 | — | 3.2 | 0.009 | 1.20 | 0.0 | 0.06 | 15.63 | 0.01 | 2.062 | 8.40 | 0.00 | 7.4 | 92.6 | 0.0 | -6.25 | 0.63 | 0.80 | 2.52 | 3.2 | 0.004 | 0.78 | 0.0 | 0.04 | 17.76 | 0.00 | 2.173 | 13.34 | 2.18 | 6.9 | 93.1 | 0.0 | -0.08 | 0.76 | 0.63 | 0.81 | 2.09 | 28592 | 3432 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7Y9T | 33691 | 2023-07-04 | 2022-06-26 | 3.1 | 3.31 | 3.07 | 3.3 | 0.018 | 1.56 | 18.0 | 0.09 | 11.12 | 0.01 | 2.305 | 4.09 | 0.96 | 6.7 | 93.3 | 0.0 | -6.23 | 0.69 | 0.87 | 3.51 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.62 | 0.00 | 2.220 | 5.37 | 0.36 | 4.5 | 95.5 | 0.0 | -1.47 | 0.59 | 0.67 | 0.87 | 3.20 | 7726 | 992 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V2Y | 31670 | 2023-07-11 | 2021-08-10 | 3.4 | 3.56 | — | 3.5 | 0.005 | 0.96 | 0.0 | 0.05 | 16.29 | 0.01 | 2.276 | 3.85 | 0.34 | 7.5 | 92.4 | 0.1 | -6.23 | 0.69 | 0.78 | 2.04 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 17.53 | 0.00 | 2.158 | 10.47 | 0.34 | 7.7 | 92.2 | 0.0 | -1.81 | 1.26 | 0.70 | 0.81 | 1.61 | 23097 | 2846 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAA | 7441 | 2023-07-04 | 2018-01-29 | 3.9 | 3.97 | — | 3.9 | 0.009 | 1.33 | 0.0 | 0.07 | 12.41 | 0.01 | 1.886 | 9.42 | 0.00 | 13.0 | 87.0 | 0.0 | -6.23 | 0.64 | 0.79 | 1.91 | 3.9 | 0.003 | 0.85 | 0.0 | 0.04 | 15.65 | 0.00 | 2.145 | 12.63 | 0.25 | 11.7 | 88.3 | 0.0 | -1.27 | 2.14 | 0.66 | 0.79 | 1.54 | 7508 | 954 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y9U | 33692 | 2023-07-04 | 2022-06-26 | 3.3 | 3.48 | 3.23 | 3.5 | 0.011 | 1.27 | 2.0 | 0.06 | 9.98 | 0.01 | 2.311 | 3.19 | 0.00 | 5.3 | 94.7 | 0.0 | -6.23 | 0.60 | 0.84 | 3.22 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 13.73 | 0.00 | 2.158 | 4.60 | 0.24 | 3.6 | 96.4 | 0.0 | -1.82 | 0.62 | 0.59 | 0.84 | 2.56 | 7748 | 988 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6DWB | 8924 | 2023-07-09 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.59 | 0.00 | 2.142 | 4.35 | 0.10 | 3.6 | 96.4 | 0.0 | 4.58 | 1.15 | 0.75 | 0.90 | 2.83 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KoG | 22975 | 2023-07-08 | 2020-11-09 | 4.25 | 3.30 | — | 6.0 | 0.005 | 1.03 | 1.0 | 0.04 | 18.29 | 0.00 | 1.580 | 10.26 | 0.70 | 0.5 | 99.5 | 0.0 | -6.22 | 0.69 | 0.62 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 16.94 | 0.00 | 2.101 | 12.44 | 0.00 | 0.6 | 99.4 | 0.0 | 2.86 | 1.99 | 0.74 | 0.74 | — | 17384 | 2154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CH0 | 30367 | 2023-07-08 | 2020-07-03 | 3.7 | 3.78 | — | 3.8 | 0.008 | 1.11 | 0.0 | 0.06 | 16.08 | 0.01 | 1.910 | 4.94 | 6.24 | 10.7 | 89.0 | 0.2 | -6.21 | 0.64 | 0.83 | 2.02 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.81 | 0.00 | 2.147 | 7.53 | 0.54 | 8.9 | 91.1 | 0.0 | -2.48 | 1.66 | 0.66 | 0.84 | 1.77 | 15856 | 2092 | 14 | 0 | 2 | 0 | 0 | logfile |