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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PFF | 13374 | 2024-03-16 | 2021-08-11 | 4.3 | 7.61 | — | 3.8 | 0.006 | 0.92 | 0.0 | 0.05 | 30.35 | 0.01 | 2.286 | 8.26 | 0.00 | 1.6 | 98.4 | 0.0 | -0.07 | 0.90 | 0.79 | — | 3.7 | 0.005 | 0.72 | 0.0 | 0.04 | 30.99 | 0.00 | 2.198 | 27.46 | 0.00 | 3.7 | 96.3 | 0.0 | 0.66 | 1.83 | 0.89 | 0.81 | — | 12935 | 768 | 10 | 334 | 0 | 0 | 0 | logfile |
✔ | 6B7N | 7063 | 2024-03-18 | 2017-10-04 | 3.3 | 4.06 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.07 | 11.30 | 0.01 | 2.171 | 5.41 | 0.78 | 12.1 | 87.5 | 0.4 | -4.33 | 0.88 | 0.85 | 2.77 | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 12.09 | 0.00 | 2.104 | 10.88 | 2.29 | 10.2 | 89.4 | 0.4 | -1.36 | 0.48 | 0.88 | 0.86 | 2.17 | 22215 | 2898 | 21 | 0 | 57 | 0 | 0 | logfile |
✔ | 6SH3 | 10192 | 2024-03-18 | 2019-08-05 | 3.4 | 3.55 | — | 3.5 | 0.006 | 0.91 | 0.0 | 0.05 | 13.40 | 0.01 | 2.287 | 3.59 | 0.62 | 6.5 | 93.5 | 0.0 | -3.29 | 0.70 | 0.80 | 2.63 | 3.5 | 0.002 | 0.64 | 0.0 | 0.04 | 15.63 | 0.01 | 2.261 | 5.62 | 2.87 | 5.6 | 94.4 | 0.0 | -0.67 | 2.17 | 0.70 | 0.82 | 2.52 | 21021 | 2632 | 14 | 0 | 7 | 0 | 0 | logfile |
✔ | 7o6Q | 12740 | 2024-03-11 | 2021-04-12 | 1.88 | 2.21 | — | 1.9 | 0.010 | 0.71 | 0.0 | 0.05 | 12.80 | 0.01 | 2.115 | 4.83 | 1.25 | 3.2 | 96.8 | 0.0 | -1.61 | 0.88 | 0.85 | 7.59 | 1.9 | 0.002 | 0.48 | 0.0 | 0.04 | 14.46 | 0.00 | 2.182 | 4.64 | 1.25 | 0.8 | 99.2 | 0.0 | 3.32 | 0.35 | 0.90 | 0.90 | 5.94 | 7999 | 997 | 8 | 0 | 0 | 399 | 0 | logfile |
✔ | 6PQR | 20452 | 2024-03-14 | 2019-07-09 | 3.4 | 3.86 | — | 3.8 | 0.009 | 0.84 | 0.0 | 0.05 | 22.10 | 0.00 | 2.081 | 16.18 | 0.24 | 3.3 | 96.7 | 0.0 | -3.38 | 0.74 | 0.80 | 2.06 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 22.00 | 0.00 | 2.066 | 13.20 | 1.57 | 3.9 | 96.1 | 0.0 | -0.77 | 0.49 | 0.70 | 0.78 | 1.66 | 9266 | 936 | 8 | 88 | 6 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2024-03-13 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 6M39 | 30071 | 2024-03-19 | 2020-03-03 | 3.55 | 3.63 | — | 3.6 | 0.010 | 1.26 | 0.0 | 0.07 | 13.06 | 0.01 | 2.271 | 7.44 | 1.23 | 9.7 | 90.3 | 0.0 | -4.52 | 0.73 | 0.80 | 2.70 | 3.6 | 0.005 | 0.91 | 1.0 | 0.05 | 14.24 | 0.00 | 1.919 | 17.22 | 5.95 | 9.3 | 90.7 | 0.0 | -2.30 | 1.66 | 0.74 | 0.82 | 2.13 | 22716 | 2811 | 6 | 0 | 54 | 0 | 0 | logfile |
✔ | 6EZN | 4161 | 2024-03-17 | 2017-11-16 | 3.3 | 3.39 | — | 3.4 | 0.008 | 1.21 | 0.0 | 0.06 | 14.62 | 0.01 | 2.291 | 5.12 | 0.51 | 8.5 | 91.1 | 0.4 | -4.93 | 0.64 | 0.70 | 3.69 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.21 | 0.00 | 2.207 | 8.50 | 2.84 | 7.3 | 92.6 | 0.1 | -1.10 | 0.63 | 0.78 | 0.86 | 3.16 | 17008 | 2090 | 17 | 0 | 21 | 0 | 0 | logfile |
✔ | 7RZH | 24760 | 2024-03-16 | 2021-08-27 | 3.8 | 3.54 | — | 3.2 | 0.012 | 1.50 | 6.0 | 0.11 | 14.19 | 0.00 | 1.444 | 15.94 | 5.29 | 2.6 | 97.3 | 0.2 | 2.98 | 0.66 | 0.54 | 0.28 | 3.2 | 0.003 | 0.76 | 0.0 | 0.04 | 16.43 | 0.00 | 2.146 | 18.14 | 2.82 | 3.6 | 96.4 | 0.1 | 0.12 | 3.17 | 0.71 | 0.63 | 0.46 | 15300 | 1867 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LWY | 23560 | 2024-03-21 | 2021-03-02 | 4.0 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.06 | 13.34 | 0.00 | 2.150 | 13.02 | 0.18 | 8.9 | 91.1 | 0.0 | -2.13 | 0.61 | 0.79 | — | 3.8 | 0.004 | 0.64 | 1.0 | 0.04 | 14.86 | 0.00 | 2.015 | 9.23 | 1.43 | 8.4 | 91.5 | 0.1 | -1.07 | 0.57 | 0.60 | 0.84 | — | 103460 | 6645 | 10 | 0 | 0 | 0 | 51395 | logfile |
✔ | 7DFG | 30663 | 2024-03-15 | 2020-11-08 | 2.7 | 2.83 | — | 2.8 | 0.012 | 0.96 | 0.0 | 0.06 | 14.75 | 0.01 | 2.062 | 4.17 | 0.38 | 2.7 | 97.3 | 0.0 | -3.02 | 0.74 | 0.87 | 4.18 | 2.8 | 0.002 | 0.50 | 0.0 | 0.04 | 16.02 | 0.00 | 2.018 | 6.83 | 1.69 | 2.4 | 97.6 | 0.0 | 0.16 | 1.15 | 0.72 | 0.87 | 3.84 | 10223 | 1200 | 10 | 28 | 9 | 5 | 0 | logfile |
✔ | 7K2T | 22644 | 2024-03-15 | 2020-09-09 | 3.6 | 3.72 | — | 3.7 | 0.005 | 0.78 | 0.0 | 0.04 | 14.49 | 0.00 | 1.955 | 9.52 | 0.00 | 4.4 | 95.6 | 0.0 | -3.30 | 0.69 | 0.84 | 2.63 | 3.7 | 0.005 | 0.68 | 0.0 | 0.04 | 16.30 | 0.00 | 1.861 | 10.88 | 2.85 | 4.1 | 95.9 | 0.0 | -0.85 | 0.64 | 0.69 | 0.84 | 2.01 | 10275 | 1249 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6QWL | 4660 | 2024-03-15 | 2019-03-05 | 4.1 | 4.22 | — | 4.1 | 0.008 | 1.01 | 0.0 | 0.06 | 17.05 | 0.01 | 2.214 | 10.07 | 0.93 | 10.8 | 89.1 | 0.1 | -4.69 | 0.75 | 0.74 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.87 | 0.00 | 2.149 | 14.26 | 0.00 | 6.4 | 93.6 | 0.0 | -1.46 | 2.24 | 0.75 | 0.73 | — | 10408 | 1244 | 5 | 26 | 0 | 0 | 0 | logfile |
✔ | 7D4F | 30572 | 2024-03-14 | 2020-09-23 | 2.57 | 2.76 | — | 2.7 | 0.012 | 0.95 | 0.0 | 0.06 | 13.57 | 0.01 | 1.326 | 6.05 | 0.76 | 2.2 | 97.8 | 0.0 | -2.50 | 0.73 | 0.85 | 3.63 | 2.7 | 0.003 | 0.51 | 0.0 | 0.04 | 15.88 | 0.00 | 2.234 | 6.05 | 1.62 | 2.2 | 97.8 | 0.0 | 0.19 | 0.41 | 0.75 | 0.88 | 3.42 | 9534 | 1181 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7STK | 25431 | 2024-03-17 | 2021-11-14 | 4.0 | 4.37 | — | 3.9 | 0.004 | 0.59 | 0.0 | 0.04 | 13.68 | 0.00 | 2.147 | 15.41 | 0.19 | 7.1 | 92.5 | 0.4 | -0.96 | 0.88 | 0.84 | — | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 15.13 | 0.00 | 2.133 | 16.14 | 1.21 | 7.3 | 92.3 | 0.4 | -0.86 | 0.37 | 0.88 | 0.84 | — | 13911 | 1726 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E23 | 30950 | 2024-03-10 | 2021-02-04 | 3.3 | 3.62 | — | 3.6 | 0.004 | 0.83 | 0.0 | 0.05 | 14.52 | 0.01 | 2.123 | 14.37 | 0.00 | 17.3 | 82.7 | 0.0 | -3.70 | 0.70 | 0.77 | 2.78 | 3.6 | 0.004 | 0.76 | 0.0 | 0.05 | 16.30 | 0.01 | 2.166 | 15.02 | 3.85 | 17.3 | 82.7 | 0.0 | -3.11 | 1.15 | 0.71 | 0.80 | 1.90 | 3133 | 403 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TAW | 25788 | 2024-03-25 | 2021-12-21 | 2.7 | 3.38 | — | 3.2 | 0.003 | 0.67 | 0.0 | 0.04 | 16.07 | 0.01 | 2.234 | 7.30 | 0.06 | 4.5 | 95.5 | 0.0 | -1.53 | 0.80 | 0.76 | 2.53 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 17.73 | 0.00 | 2.138 | 13.06 | 1.57 | 5.3 | 94.7 | 0.0 | -0.26 | 1.26 | 0.78 | 0.82 | 2.24 | 51399 | 6242 | 24 | 160 | 0 | 0 | 0 | logfile |
✔ | 6PSS | 20462 | 2024-03-22 | 2019-07-13 | 3.5 | 2.98 | — | 3.2 | 0.008 | 1.08 | 0.0 | 0.06 | 20.99 | 0.01 | 1.663 | 9.14 | 11.08 | 7.7 | 92.1 | 0.2 | -4.70 | 0.62 | 0.74 | 1.37 | 3.2 | 0.005 | 0.73 | 0.0 | 0.04 | 20.64 | 0.00 | 1.929 | 16.58 | 7.16 | 8.3 | 91.6 | 0.1 | -1.69 | 1.95 | 0.62 | 0.73 | 1.16 | 32361 | 3905 | 12 | 86 | 4 | 0 | 0 | logfile |
✔ | 6PSW | 20466 | 2024-03-22 | 2019-07-13 | 3.7 | 3.46 | — | 3.5 | 0.008 | 0.89 | 0.0 | 0.05 | 18.87 | 0.00 | 1.987 | 42.40 | 0.40 | 11.4 | 88.4 | 0.2 | -4.03 | 0.69 | 0.78 | 1.68 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 19.65 | 0.00 | 2.038 | 14.99 | 3.24 | 7.5 | 92.4 | 0.1 | -1.13 | 0.69 | 0.69 | 0.78 | 1.16 | 32695 | 3831 | 13 | 124 | 6 | 0 | 0 | logfile |
✔ | 7FFE | 31566 | 2024-03-22 | 2021-07-23 | 3.5 | 3.89 | — | 3.9 | 0.007 | 0.93 | 0.0 | 0.06 | 9.40 | 0.01 | 2.211 | 4.93 | 0.28 | 6.6 | 93.3 | 0.1 | -3.34 | 0.51 | 0.79 | 2.77 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.22 | 0.00 | 2.125 | 9.85 | 2.46 | 5.3 | 94.6 | 0.1 | -0.56 | 2.44 | 0.50 | 0.83 | 2.26 | 33063 | 4275 | 16 | 0 | 0 | 0 | 0 | logfile |