Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MJH	23873	2023-07-13	2021-04-20	2.66	3.49	—	3.0	0.005	0.77	0.0	0.05	13.30	0.01	2.266	3.37	0.00	3.0	97.0	0.0	-0.62	0.82	0.82	2.50	3.1	0.003	0.63	0.0	0.04	15.13	0.00	2.153	9.18	1.08	2.3	97.7	0.0	0.60	1.19	0.82	0.83	2.23	28143	3495	27	0	60	0	0	logfile
✔	6Z2W	11050	2023-07-19	2020-05-18	2.82	3.21	—	3.2	0.008	1.18	0.0	0.07	11.86	0.01	2.071	5.92	0.81	8.5	91.5	0.0	-4.67	0.64	0.79	2.57	3.2	0.006	0.83	0.0	0.05	16.01	0.00	1.859	16.00	3.29	7.9	92.1	0.0	-1.32	1.26	0.63	0.80	2.23	46588	5766	8	0	8	4	0	logfile
✔	7A6F	11672	2023-07-06	2020-08-25	3.5	3.35	—	3.5	0.012	1.43	0.0	0.18	17.94	0.01	1.592	33.07	1.50	7.8	92.2	0.0	-4.13	0.60	0.73	1.87	3.5	0.005	0.78	0.0	0.05	18.27	0.00	2.097	12.09	0.30	4.4	95.6	0.0	-0.43	0.52	0.61	0.73	1.70	12655	1596	4	0	10	0	0	logfile
✔	6WQH	21870	2023-07-12	2020-04-28	3.6	4.01	—	3.9	0.013	0.98	2.0	0.05	15.28	0.01	1.240	22.32	0.56	8.0	91.9	0.2	-4.12	0.75	0.83	1.98	3.9	0.004	0.72	0.0	0.04	16.88	0.00	2.124	16.51	0.67	5.5	94.5	0.0	-0.82	0.65	0.75	0.83	1.54	25471	3223	13	0	22	0	0	logfile
✘	7D61	30587	2023-07-12	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.22	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✔	7LHE	23337	2023-07-11	2021-01-22	3.3	4.03	—	3.8	0.007	1.16	0.0	0.05	16.35	0.01	1.680	7.12	0.00	10.8	88.9	0.3	-2.90	0.80	0.75	1.33	3.8	0.003	0.74	0.0	0.04	16.95	0.00	2.085	13.70	0.19	10.5	89.3	0.2	-1.30	0.72	0.83	0.81	0.71	73691	9192	8	0	32	0	0	logfile
✔	7CRB	30449	2023-07-04	2020-08-13	3.16	3.51	—	3.4	0.005	0.81	2.0	0.05	13.84	0.00	2.288	8.58	0.77	8.8	91.2	0.0	-2.29	0.75	0.82	3.00	3.4	0.003	0.63	0.0	0.04	15.65	0.00	2.258	9.16	0.13	7.2	92.8	0.0	-1.12	1.16	0.71	0.81	2.71	6806	851	2	0	0	0	0	logfile
✘	7PXG	13702	2023-07-13	2021-10-08	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28664	3540	8	0	32	0	0	logfile
✘	6YAC	10746	2023-07-17	2020-03-12	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38469	3332	45	0	243	56	0	logfile
✔	6P6J	20264	2023-07-04	2019-06-04	3.4	4.20	—	4.1	0.011	1.15	0.0	0.06	15.62	0.01	1.901	7.84	0.77	6.2	93.8	0.0	-4.33	0.66	0.81	1.47	4.1	0.003	0.77	0.0	0.04	17.13	0.00	2.115	11.09	0.66	5.4	94.6	0.0	0.81	1.93	0.63	0.80	1.19	8841	1140	3	0	2	0	0	logfile
✔	7E9N	31033	2023-07-15	2021-03-04	3.69	4.53	—	3.8	0.009	0.92	0.0	0.06	13.40	0.01	2.217	12.55	0.05	8.1	91.9	0.0	-2.35	0.83	0.77	1.84	3.9	0.003	0.62	0.0	0.04	14.92	0.00	2.127	11.52	0.16	4.9	95.1	0.0	-0.85	1.28	0.85	0.81	1.32	33519	4313	12	0	27	0	0	logfile
✔	7SXX	25509	2023-07-12	2021-11-24	2.66	3.58	—	2.8	0.005	0.80	0.0	0.06	13.37	0.01	2.298	3.29	0.00	1.6	98.4	0.0	-0.02	0.83	0.84	2.36	2.9	0.002	0.56	0.0	0.04	14.71	0.00	2.140	8.16	0.55	2.2	97.8	0.0	1.08	1.17	0.83	0.85	2.47	26972	3318	26	0	62	0	0	logfile
✘	7E9Q	31036	2023-07-15	2021-03-04	3.65	4.00	—	3.9	0.007	0.93	4.0	0.06	13.47	0.01	2.209	14.87	0.27	6.4	93.6	0.0	-2.42	0.68	0.73	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33876	4338	12	0	27	0	0	logfile
✔	7TTS	26122	2023-07-09	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.67	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.61	0.00	1.831	19.04	0.24	3.7	96.2	0.1	1.97	1.03	0.84	0.81	-0.20	18793	2686	12	0	23	0	0	logfile
✔	7WE8	32442	2023-07-13	2021-12-23	3.5	4.24	—	4.0	0.004	0.66	0.0	0.05	13.21	0.00	1.600	10.93	0.26	5.5	94.4	0.1	-1.57	0.83	0.82	1.52	4.0	0.004	0.67	0.0	0.04	14.93	0.00	2.143	12.98	0.29	6.5	93.4	0.1	-1.43	1.60	0.83	0.83	1.43	28585	3522	27	0	69	0	0	logfile
✔	7T9J	25759	2023-07-10	2021-12-19	2.79	3.38	—	3.2	0.006	0.86	0.0	0.06	13.14	0.01	2.225	4.49	0.17	1.7	98.2	0.0	0.20	0.77	0.71	1.43	3.1	0.003	0.63	0.0	0.04	15.40	0.00	2.163	8.82	1.30	2.2	97.8	0.0	0.52	1.11	0.80	0.82	2.51	21960	2703	24	0	58	0	0	logfile
✔	7QVM	14180	2023-07-04	2022-01-21	3.25	3.83	—	3.6	0.003	0.64	0.0	0.04	12.94	0.00	2.156	11.45	0.00	3.6	96.4	0.0	0.22	0.72	0.78	2.24	3.6	0.003	0.66	0.0	0.04	15.69	0.00	2.108	13.69	0.11	3.4	96.6	0.0	0.45	0.80	0.72	0.80	1.63	8528	1094	6	0	1	0	0	logfile
✔	7TF4	25861	2023-07-06	2022-01-06	3.01	3.49	—	3.3	0.005	0.85	0.0	0.05	12.82	0.01	2.278	3.59	0.00	2.8	97.2	0.0	-1.60	0.63	0.82	3.29	3.3	0.003	0.55	0.0	0.05	14.20	0.00	2.088	7.42	0.29	2.9	97.1	0.0	-0.52	0.45	0.64	0.84	3.14	12792	1608	12	0	12	0	0	logfile
✔	6VQG	21349	2023-07-10	2020-02-05	4.2	4.51	—	4.3	0.008	0.98	0.0	0.07	11.37	0.00	2.219	5.30	1.36	2.6	97.2	0.3	0.61	0.64	0.70	—	4.3	0.004	0.84	0.0	0.05	12.62	0.00	2.102	19.72	0.19	3.5	96.4	0.0	0.99	1.10	0.68	0.77	—	20946	2813	18	0	0	0	0	logfile
✔	6VQH	21350	2023-07-09	2020-02-05	4.4	4.72	—	4.6	0.008	1.00	0.0	0.07	11.13	0.00	2.336	5.47	2.06	2.6	97.2	0.2	0.63	0.64	0.67	—	4.6	0.004	0.83	0.0	0.05	11.90	0.00	2.130	19.29	0.00	3.1	96.9	0.0	1.38	1.04	0.68	0.73	—	19338	2813	18	0	0	0	0	logfile

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