Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i7N	35223	2023-08-11	2023-02-01	2.98	3.12	2.92	3.0	0.007	0.66	0.0	0.04	14.75	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.008	0.74	0.0	0.04	15.18	0.01	1.932	5.19	0.00	0.0	0.0	0.0	—	0.94	0.87	0.91	—	8979	0	1	418	29	0	0	logfile
✘	8DDW	27344	2023-08-18	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25869	3198	10	0	68	0	0	logfile
✘	6PP5	20419	2023-08-21	2019-07-05	3.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32118	2063	13	0	18	0	16112	logfile
✔	6TNZ	10540	2023-08-17	2019-12-10	4.05	4.32	—	3.9	0.009	1.14	2.0	0.07	17.46	0.01	1.874	14.11	1.57	7.8	91.1	1.1	-3.76	0.78	0.60	—	3.9	0.006	0.90	0.0	0.05	16.29	0.01	2.064	17.79	0.00	9.1	90.8	0.1	-2.05	2.25	0.88	0.77	—	22008	2705	11	50	3	0	0	logfile
✘	7EDX	31075	2023-08-20	2021-03-17	4.5	4.87	—	4.1	0.008	1.09	34.0	0.07	16.62	0.01	1.497	20.97	3.31	6.1	93.4	0.5	-3.70	0.67	0.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81790	9837	46	154	10	0	0	logfile
✘	7DR2	30823	2023-08-22	2020-12-25	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	89952	8588	76	0	438	0	0	logfile
✔	7VXD	32176	2023-08-21	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.52	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	4.3	0.003	0.73	0.0	0.04	14.17	0.00	2.102	16.36	0.45	4.0	96.0	0.0	-0.78	1.63	0.74	0.74	—	30194	3829	4	0	0	0	0	logfile
✔	7V02	26927	2023-08-15	2022-05-09	4.97	8.16	5.87	4.6	0.006	0.93	0.0	0.06	13.46	0.00	2.048	13.24	0.65	4.8	95.1	0.0	-1.12	0.83	0.64	—	4.7	0.003	0.64	0.0	0.04	13.92	0.00	2.143	22.35	0.00	4.0	96.0	0.0	-0.14	1.11	0.91	0.81	—	17417	2070	9	29	0	0	0	logfile
✘	6SGA	10177	2023-08-22	2019-08-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137038	15423	77	463	790	0	0	logfile
✔	7NPU	12521	2023-08-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	7UZZ	26923	2023-08-16	2022-05-09	4.45	6.04	4.45	4.4	0.008	0.98	0.0	0.06	12.58	0.00	1.424	17.03	0.75	5.0	95.0	0.0	-0.66	0.84	0.70	—	4.4	0.003	0.58	0.0	0.04	12.99	0.00	2.131	14.09	0.05	3.4	96.6	0.0	0.63	2.36	0.91	0.83	—	19967	2380	11	30	0	0	0	logfile
✔	7K1V	22630	2023-08-09	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	6VoJ	21266	2023-08-24	2020-01-30	4.34	3.41	—	3.3	0.005	0.93	0.0	0.05	15.90	0.01	2.217	9.75	0.39	5.9	94.0	0.1	-3.58	0.74	0.66	—	3.3	0.003	0.72	0.0	0.04	15.09	0.00	2.093	16.53	0.02	5.1	94.9	0.1	-0.77	1.28	0.74	0.67	—	39155	5185	32	0	7	0	0	logfile
✔	7WPS	32690	2023-08-18	2022-01-24	4.32	4.69	—	4.2	0.007	0.92	0.0	0.06	10.45	0.01	1.790	3.99	0.35	10.0	89.8	0.2	-4.55	0.72	0.47	—	4.1	0.003	0.72	0.0	0.04	11.70	0.00	2.104	14.22	0.12	7.5	92.5	0.0	-1.91	2.69	0.91	0.80	—	127624	16646	56	0	98	0	0	logfile
✘	5NUG	3698	2023-08-26	2017-04-30	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46232	5840	4	0	10	0	0	logfile
✔	7E8S	31021	2023-08-26	2021-03-02	4.36	4.87	—	4.2	0.007	1.44	6.0	0.08	14.38	0.01	1.149	8.12	0.55	9.7	89.4	0.8	-4.63	0.75	0.47	—	3.9	0.006	0.89	0.0	0.05	13.38	0.01	1.977	27.41	0.00	13.5	86.3	0.2	-2.38	1.18	0.85	0.69	—	46554	6572	22	0	0	0	0	logfile
✔	5X5C	6706	2023-08-19	2017-02-15	4.1	4.20	—	4.1	0.014	1.75	3.0	0.08	14.64	0.01	1.435	30.55	5.82	13.2	85.6	1.2	-3.80	0.65	0.57	—	4.1	0.004	0.96	0.0	0.05	13.03	0.01	2.034	19.12	0.07	12.9	86.9	0.2	-2.46	1.55	0.72	0.71	—	26418	3423	3	0	0	0	0	logfile
✔	6RWA	10036	2023-08-23	2019-06-04	4.0	4.09	—	3.9	0.008	1.06	0.0	0.06	10.14	0.01	2.231	5.96	0.00	5.8	94.1	0.1	-2.91	0.85	0.80	—	3.9	0.004	0.73	0.0	0.04	15.21	0.00	2.089	14.19	0.34	5.9	94.1	0.0	0.13	1.53	0.86	0.83	—	94565	11805	5	0	0	0	0	logfile
✔	8G88	29843	2023-08-13	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	28.10	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.006	0.68	0.0	0.04	29.42	0.00	2.075	29.38	0.00	2.5	97.5	0.0	1.55	2.54	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✘	7XTB	33445	2023-08-10	2022-05-16	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8101	1037	5	0	1	0	0	logfile

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