Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UiN	26550	2023-02-21	2022-03-29	2.8	2.99	2.83	3.0	0.010	1.21	1.0	0.05	19.72	0.01	1.477	4.43	2.93	3.7	95.8	0.5	-1.14	0.71	0.80	2.44	3.0	0.005	0.68	0.0	0.04	19.50	0.01	1.748	11.10	3.81	3.4	96.1	0.5	0.38	0.92	0.72	0.85	2.57	15585	387	5	578	30	24	0	logfile
✔	6ND4	0441	2023-02-24	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.55	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.007	1.08	0.0	0.05	15.04	0.01	1.926	19.87	0.00	17.6	82.3	0.1	-3.59	1.14	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	7V96	31810	2023-02-24	2021-08-24	3.92	4.00	3.84	4.0	0.011	1.59	35.0	0.11	30.67	0.01	1.891	6.46	15.66	4.7	94.5	0.8	-1.38	0.71	0.74	1.81	4.0	0.005	0.66	0.0	0.04	28.95	0.00	2.187	10.97	0.53	5.6	94.2	0.2	-1.06	1.19	0.76	0.82	1.31	23968	1593	18	550	0	0	0	logfile
✔	7V9C	31815	2023-02-24	2021-08-24	4.5	3.01	4.36	3.5	0.002	0.44	0.0	0.03	28.95	0.00	2.240	8.56	1.27	5.0	94.1	0.9	-0.37	0.60	0.38	—	2.9	0.006	0.86	0.0	0.04	29.58	0.01	2.063	26.21	0.40	5.8	93.9	0.3	-0.16	1.78	0.73	0.58	—	23228	1518	18	546	0	0	0	logfile
✔	7PTQ	13633	2023-02-22	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	15.27	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.67	0.0	0.04	19.44	0.00	1.852	43.48	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7UiM	26549	2023-02-21	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	18.46	0.01	1.903	9.02	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.006	0.82	0.0	0.04	19.55	0.01	0.997	36.04	1.47	6.3	93.4	0.3	-0.97	2.81	0.79	0.76	0.73	14772	387	3	541	15	0	0	logfile
✔	6oBJ	20015	2023-02-24	2019-03-20	3.5	3.71	3.65	3.5	0.005	0.76	0.0	0.05	19.56	0.01	1.646	8.47	1.42	9.5	90.5	0.0	-5.00	0.64	0.71	0.81	3.5	0.003	0.64	0.0	0.04	21.50	0.00	2.077	12.16	0.16	7.4	92.6	0.0	-1.51	0.99	0.69	0.82	1.39	64060	6760	60	520	20	0	0	logfile
✘	6K0A	30036	2023-02-24	2019-05-05	4.6	4.81	—	4.5	0.003	0.70	0.0	0.04	15.45	0.01	2.316	2.94	0.83	5.3	94.7	0.0	-4.65	0.80	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22276	1364	14	516	2	0	0	logfile
✔	5W7G	8780	2023-02-21	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	7.42	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	4.1	0.006	1.01	0.0	0.05	15.88	0.01	2.094	44.81	0.00	6.3	93.7	0.0	-1.44	2.20	0.56	0.62	—	53508	5397	44	504	0	0	0	logfile
✔	6YBS	10772	2023-02-26	2020-03-17	3.1	3.28	3.00	3.2	0.007	0.98	0.0	0.06	15.65	0.01	2.044	3.59	2.92	5.3	94.7	0.0	-2.57	0.77	0.87	2.97	3.2	0.004	0.62	0.0	0.04	15.85	0.00	1.890	8.69	0.43	5.1	94.9	0.0	-0.60	0.40	0.77	0.88	2.64	28732	2330	21	501	30	0	0	logfile
✔	8EA4	27972	2023-02-22	2022-08-27	3.0	4.51	3.88	3.9	0.013	1.63	12.0	0.08	16.78	0.02	1.131	13.81	0.21	2.3	97.7	0.0	-1.13	0.76	0.60	1.23	3.9	0.003	0.69	0.0	0.04	18.63	0.00	1.883	12.88	1.52	2.8	97.2	0.0	1.53	1.45	0.89	0.83	1.05	58049	5875	46	495	28	0	0	logfile
✔	8EA3	27971	2023-02-22	2022-08-27	3.7	3.91	3.69	3.8	0.013	1.65	12.0	0.09	16.88	0.02	1.162	11.38	0.29	2.4	97.4	0.2	-1.04	0.75	0.70	2.00	3.8	0.003	0.58	0.0	0.04	18.89	0.00	1.926	8.58	0.25	2.5	97.5	0.0	1.54	1.43	0.81	0.82	1.32	55955	5618	44	495	26	0	0	logfile
✔	6SWE	10324	2023-02-24	2019-09-20	3.1	3.79	3.08	3.3	0.012	0.98	0.0	0.05	15.93	0.02	1.948	7.42	1.17	12.0	88.0	0.0	-4.83	0.87	0.84	2.43	3.3	0.004	0.73	0.0	0.04	15.59	0.01	1.965	7.22	0.08	6.4	93.6	0.0	-0.95	1.22	0.90	0.90	2.00	22737	1523	21	486	9	18	0	logfile
✔	6YS5	10892	2023-02-22	2020-04-21	3.0	3.05	2.83	3.0	0.007	0.72	0.0	0.05	15.84	0.01	1.880	5.29	7.15	7.4	92.6	0.0	-3.10	0.80	0.87	2.82	3.0	0.005	0.61	0.0	0.04	15.96	0.00	1.876	5.39	5.11	7.3	92.7	0.0	-0.24	0.31	0.80	0.90	2.97	16864	852	13	477	24	0	0	logfile
✔	6YTF	10915	2023-02-22	2020-04-24	3.0	3.05	2.90	3.0	0.010	0.92	0.0	0.05	18.00	0.01	1.898	15.26	11.09	8.7	91.0	0.2	-4.10	0.71	0.71	1.43	3.0	0.005	0.78	0.0	0.04	17.16	0.01	1.845	14.09	7.45	7.8	92.0	0.2	-0.95	1.18	0.73	0.74	1.32	16906	852	12	477	25	0	0	logfile
✔	6G90	4364	2023-02-24	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.73	0.03	1.687	18.99	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.003	0.90	0.0	0.04	15.20	0.01	2.102	17.67	0.21	7.5	92.2	0.3	-0.80	3.85	0.58	0.57	—	65050	6796	43	474	223	0	0	logfile
✔	6ZoL	11322	2023-02-25	2020-07-07	2.8	3.00	2.78	2.9	0.003	0.55	0.0	0.04	14.47	0.00	1.309	4.00	1.49	3.0	97.0	0.0	0.69	0.75	0.87	3.29	2.9	0.003	0.55	0.0	0.04	16.47	0.00	1.135	5.22	1.91	3.0	97.0	0.0	0.81	2.44	0.77	0.89	2.71	25591	1944	22	472	59	0	0	logfile
✔	7BGE	12179	2023-02-22	2021-01-06	3.6	3.70	—	3.6	0.006	1.33	3.0	0.06	16.63	0.01	2.296	3.75	2.13	10.3	89.6	0.1	-5.86	0.82	0.79	1.70	3.6	0.005	0.69	0.0	0.04	16.33	0.01	2.038	15.55	0.93	11.6	88.4	0.0	-2.18	0.65	0.84	0.83	1.50	16988	879	9	465	0	0	0	logfile
✔	5LJ3	4055	2023-02-24	2016-07-17	3.8	3.92	—	3.8	0.007	1.46	40.0	0.09	17.30	0.01	1.631	5.99	8.54	8.1	90.7	1.2	-1.69	0.70	0.81	1.37	3.8	0.003	0.72	0.0	0.04	17.08	0.00	2.001	14.47	0.45	4.9	94.9	0.2	0.41	0.85	0.69	0.78	1.39	63161	7305	45	458	142	0	0	logfile
✔	7AFK	11768	2023-02-22	2020-09-19	4.9	5.45	4.72	3.0	0.008	0.89	1.0	0.05	18.34	0.02	1.519	42.31	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.6	0.004	0.72	0.0	0.04	17.57	0.01	1.856	35.81	0.00	4.9	95.1	0.0	-1.08	0.78	0.88	0.84	—	18521	1108	11	456	13	0	0	logfile

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