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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UiN | 26550 | 2023-02-21 | 2022-03-29 | 2.8 | 2.99 | 2.83 | 3.0 | 0.010 | 1.21 | 1.0 | 0.05 | 19.72 | 0.01 | 1.477 | 4.43 | 2.93 | 3.7 | 95.8 | 0.5 | -1.14 | 0.71 | 0.80 | 2.44 | 3.0 | 0.005 | 0.68 | 0.0 | 0.04 | 19.50 | 0.01 | 1.748 | 11.10 | 3.81 | 3.4 | 96.1 | 0.5 | 0.38 | 0.92 | 0.72 | 0.85 | 2.57 | 15585 | 387 | 5 | 578 | 30 | 24 | 0 | logfile |
✔ | 6ND4 | 0441 | 2023-02-24 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 14.55 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.007 | 1.08 | 0.0 | 0.05 | 15.04 | 0.01 | 1.926 | 19.87 | 0.00 | 17.6 | 82.3 | 0.1 | -3.59 | 1.14 | 0.85 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 7V96 | 31810 | 2023-02-24 | 2021-08-24 | 3.92 | 4.00 | 3.84 | 4.0 | 0.011 | 1.59 | 35.0 | 0.11 | 30.67 | 0.01 | 1.891 | 6.46 | 15.66 | 4.7 | 94.5 | 0.8 | -1.38 | 0.71 | 0.74 | 1.81 | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 28.95 | 0.00 | 2.187 | 10.97 | 0.53 | 5.6 | 94.2 | 0.2 | -1.06 | 1.19 | 0.76 | 0.82 | 1.31 | 23968 | 1593 | 18 | 550 | 0 | 0 | 0 | logfile |
✔ | 7V9C | 31815 | 2023-02-24 | 2021-08-24 | 4.5 | 3.01 | 4.36 | 3.5 | 0.002 | 0.44 | 0.0 | 0.03 | 28.95 | 0.00 | 2.240 | 8.56 | 1.27 | 5.0 | 94.1 | 0.9 | -0.37 | 0.60 | 0.38 | — | 2.9 | 0.006 | 0.86 | 0.0 | 0.04 | 29.58 | 0.01 | 2.063 | 26.21 | 0.40 | 5.8 | 93.9 | 0.3 | -0.16 | 1.78 | 0.73 | 0.58 | — | 23228 | 1518 | 18 | 546 | 0 | 0 | 0 | logfile |
✔ | 7PTQ | 13633 | 2023-02-22 | 2021-09-27 | 4.08 | 6.47 | 4.22 | 4.0 | 0.005 | 0.78 | 0.0 | 0.04 | 15.27 | 0.00 | 1.983 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.80 | — | 4.0 | 0.006 | 0.67 | 0.0 | 0.04 | 19.44 | 0.00 | 1.852 | 43.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.75 | 0.96 | 0.94 | — | 17434 | 0 | 1 | 544 | 0 | 0 | 5847 | logfile |
✔ | 7UiM | 26549 | 2023-02-21 | 2022-03-29 | 3.1 | 4.12 | 3.81 | 3.6 | 0.005 | 0.87 | 0.0 | 0.04 | 18.46 | 0.01 | 1.903 | 9.02 | 0.00 | 3.7 | 96.3 | 0.0 | -1.28 | 0.67 | 0.47 | 0.98 | 3.6 | 0.006 | 0.82 | 0.0 | 0.04 | 19.55 | 0.01 | 0.997 | 36.04 | 1.47 | 6.3 | 93.4 | 0.3 | -0.97 | 2.81 | 0.79 | 0.76 | 0.73 | 14772 | 387 | 3 | 541 | 15 | 0 | 0 | logfile |
✔ | 6oBJ | 20015 | 2023-02-24 | 2019-03-20 | 3.5 | 3.71 | 3.65 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 19.56 | 0.01 | 1.646 | 8.47 | 1.42 | 9.5 | 90.5 | 0.0 | -5.00 | 0.64 | 0.71 | 0.81 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 21.50 | 0.00 | 2.077 | 12.16 | 0.16 | 7.4 | 92.6 | 0.0 | -1.51 | 0.99 | 0.69 | 0.82 | 1.39 | 64060 | 6760 | 60 | 520 | 20 | 0 | 0 | logfile |
✘ | 6K0A | 30036 | 2023-02-24 | 2019-05-05 | 4.6 | 4.81 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 15.45 | 0.01 | 2.316 | 2.94 | 0.83 | 5.3 | 94.7 | 0.0 | -4.65 | 0.80 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 1364 | 14 | 516 | 2 | 0 | 0 | logfile |
✔ | 5W7G | 8780 | 2023-02-21 | 2017-06-19 | 4.5 | 4.20 | — | 4.2 | 0.015 | 1.17 | 0.0 | 0.07 | 15.16 | 0.01 | 2.165 | 7.42 | 0.45 | 1.2 | 98.8 | 0.0 | -0.31 | 0.50 | 0.47 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.05 | 15.88 | 0.01 | 2.094 | 44.81 | 0.00 | 6.3 | 93.7 | 0.0 | -1.44 | 2.20 | 0.56 | 0.62 | — | 53508 | 5397 | 44 | 504 | 0 | 0 | 0 | logfile |
✔ | 6YBS | 10772 | 2023-02-26 | 2020-03-17 | 3.1 | 3.28 | 3.00 | 3.2 | 0.007 | 0.98 | 0.0 | 0.06 | 15.65 | 0.01 | 2.044 | 3.59 | 2.92 | 5.3 | 94.7 | 0.0 | -2.57 | 0.77 | 0.87 | 2.97 | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 15.85 | 0.00 | 1.890 | 8.69 | 0.43 | 5.1 | 94.9 | 0.0 | -0.60 | 0.40 | 0.77 | 0.88 | 2.64 | 28732 | 2330 | 21 | 501 | 30 | 0 | 0 | logfile |
✔ | 8EA4 | 27972 | 2023-02-22 | 2022-08-27 | 3.0 | 4.51 | 3.88 | 3.9 | 0.013 | 1.63 | 12.0 | 0.08 | 16.78 | 0.02 | 1.131 | 13.81 | 0.21 | 2.3 | 97.7 | 0.0 | -1.13 | 0.76 | 0.60 | 1.23 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 18.63 | 0.00 | 1.883 | 12.88 | 1.52 | 2.8 | 97.2 | 0.0 | 1.53 | 1.45 | 0.89 | 0.83 | 1.05 | 58049 | 5875 | 46 | 495 | 28 | 0 | 0 | logfile |
✔ | 8EA3 | 27971 | 2023-02-22 | 2022-08-27 | 3.7 | 3.91 | 3.69 | 3.8 | 0.013 | 1.65 | 12.0 | 0.09 | 16.88 | 0.02 | 1.162 | 11.38 | 0.29 | 2.4 | 97.4 | 0.2 | -1.04 | 0.75 | 0.70 | 2.00 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 18.89 | 0.00 | 1.926 | 8.58 | 0.25 | 2.5 | 97.5 | 0.0 | 1.54 | 1.43 | 0.81 | 0.82 | 1.32 | 55955 | 5618 | 44 | 495 | 26 | 0 | 0 | logfile |
✔ | 6SWE | 10324 | 2023-02-24 | 2019-09-20 | 3.1 | 3.79 | 3.08 | 3.3 | 0.012 | 0.98 | 0.0 | 0.05 | 15.93 | 0.02 | 1.948 | 7.42 | 1.17 | 12.0 | 88.0 | 0.0 | -4.83 | 0.87 | 0.84 | 2.43 | 3.3 | 0.004 | 0.73 | 0.0 | 0.04 | 15.59 | 0.01 | 1.965 | 7.22 | 0.08 | 6.4 | 93.6 | 0.0 | -0.95 | 1.22 | 0.90 | 0.90 | 2.00 | 22737 | 1523 | 21 | 486 | 9 | 18 | 0 | logfile |
✔ | 6YS5 | 10892 | 2023-02-22 | 2020-04-21 | 3.0 | 3.05 | 2.83 | 3.0 | 0.007 | 0.72 | 0.0 | 0.05 | 15.84 | 0.01 | 1.880 | 5.29 | 7.15 | 7.4 | 92.6 | 0.0 | -3.10 | 0.80 | 0.87 | 2.82 | 3.0 | 0.005 | 0.61 | 0.0 | 0.04 | 15.96 | 0.00 | 1.876 | 5.39 | 5.11 | 7.3 | 92.7 | 0.0 | -0.24 | 0.31 | 0.80 | 0.90 | 2.97 | 16864 | 852 | 13 | 477 | 24 | 0 | 0 | logfile |
✔ | 6YTF | 10915 | 2023-02-22 | 2020-04-24 | 3.0 | 3.05 | 2.90 | 3.0 | 0.010 | 0.92 | 0.0 | 0.05 | 18.00 | 0.01 | 1.898 | 15.26 | 11.09 | 8.7 | 91.0 | 0.2 | -4.10 | 0.71 | 0.71 | 1.43 | 3.0 | 0.005 | 0.78 | 0.0 | 0.04 | 17.16 | 0.01 | 1.845 | 14.09 | 7.45 | 7.8 | 92.0 | 0.2 | -0.95 | 1.18 | 0.73 | 0.74 | 1.32 | 16906 | 852 | 12 | 477 | 25 | 0 | 0 | logfile |
✔ | 6G90 | 4364 | 2023-02-24 | 2018-04-10 | 4.0 | 4.12 | — | 3.9 | 0.009 | 1.30 | 2.0 | 0.07 | 12.73 | 0.03 | 1.687 | 18.99 | 0.57 | 7.8 | 91.4 | 0.8 | -3.55 | 0.51 | 0.41 | — | 3.9 | 0.003 | 0.90 | 0.0 | 0.04 | 15.20 | 0.01 | 2.102 | 17.67 | 0.21 | 7.5 | 92.2 | 0.3 | -0.80 | 3.85 | 0.58 | 0.57 | — | 65050 | 6796 | 43 | 474 | 223 | 0 | 0 | logfile |
✔ | 6ZoL | 11322 | 2023-02-25 | 2020-07-07 | 2.8 | 3.00 | 2.78 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 14.47 | 0.00 | 1.309 | 4.00 | 1.49 | 3.0 | 97.0 | 0.0 | 0.69 | 0.75 | 0.87 | 3.29 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 16.47 | 0.00 | 1.135 | 5.22 | 1.91 | 3.0 | 97.0 | 0.0 | 0.81 | 2.44 | 0.77 | 0.89 | 2.71 | 25591 | 1944 | 22 | 472 | 59 | 0 | 0 | logfile |
✔ | 7BGE | 12179 | 2023-02-22 | 2021-01-06 | 3.6 | 3.70 | — | 3.6 | 0.006 | 1.33 | 3.0 | 0.06 | 16.63 | 0.01 | 2.296 | 3.75 | 2.13 | 10.3 | 89.6 | 0.1 | -5.86 | 0.82 | 0.79 | 1.70 | 3.6 | 0.005 | 0.69 | 0.0 | 0.04 | 16.33 | 0.01 | 2.038 | 15.55 | 0.93 | 11.6 | 88.4 | 0.0 | -2.18 | 0.65 | 0.84 | 0.83 | 1.50 | 16988 | 879 | 9 | 465 | 0 | 0 | 0 | logfile |
✔ | 5LJ3 | 4055 | 2023-02-24 | 2016-07-17 | 3.8 | 3.92 | — | 3.8 | 0.007 | 1.46 | 40.0 | 0.09 | 17.30 | 0.01 | 1.631 | 5.99 | 8.54 | 8.1 | 90.7 | 1.2 | -1.69 | 0.70 | 0.81 | 1.37 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 17.08 | 0.00 | 2.001 | 14.47 | 0.45 | 4.9 | 94.9 | 0.2 | 0.41 | 0.85 | 0.69 | 0.78 | 1.39 | 63161 | 7305 | 45 | 458 | 142 | 0 | 0 | logfile |
✔ | 7AFK | 11768 | 2023-02-22 | 2020-09-19 | 4.9 | 5.45 | 4.72 | 3.0 | 0.008 | 0.89 | 1.0 | 0.05 | 18.34 | 0.02 | 1.519 | 42.31 | 0.00 | 8.4 | 91.6 | 0.0 | -2.88 | 0.87 | 0.80 | — | 2.6 | 0.004 | 0.72 | 0.0 | 0.04 | 17.57 | 0.01 | 1.856 | 35.81 | 0.00 | 4.9 | 95.1 | 0.0 | -1.08 | 0.78 | 0.88 | 0.84 | — | 18521 | 1108 | 11 | 456 | 13 | 0 | 0 | logfile |