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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5XXB | 6778 | 2023-11-16 | 2017-07-03 | 3.17 | 3.22 | — | 3.2 | 0.006 | 1.07 | 5.0 | 0.09 | 17.43 | 0.00 | 1.261 | 4.91 | 4.74 | 7.1 | 91.3 | 1.5 | -3.54 | 0.65 | 0.77 | 2.19 | 3.2 | 0.006 | 0.72 | 0.0 | 0.04 | 16.77 | 0.01 | 2.019 | 8.94 | 0.86 | 6.9 | 92.6 | 0.5 | -1.18 | 0.63 | 0.81 | 0.87 | 1.82 | 121433 | 6215 | 44 | 3352 | 0 | 0 | 0 | logfile |
✔ | 6N8J | 0369 | 2023-11-18 | 2018-11-29 | 3.5 | 3.75 | — | 3.6 | 0.007 | 0.95 | 0.0 | 0.05 | 15.15 | 0.01 | 1.297 | 3.61 | 0.51 | 7.3 | 92.4 | 0.3 | -4.65 | 0.82 | 0.87 | 3.28 | 3.6 | 0.004 | 0.64 | 0.0 | 0.04 | 15.99 | 0.00 | 1.839 | 9.67 | 0.53 | 8.3 | 91.5 | 0.1 | -1.32 | 1.26 | 0.81 | 0.87 | 2.21 | 132554 | 7675 | 51 | 3326 | 96 | 0 | 0 | logfile |
✔ | 7BT6 | 30170 | 2023-11-18 | 2020-03-31 | 3.12 | 3.18 | — | 3.1 | 0.006 | 0.77 | 0.0 | 0.04 | 18.45 | 0.01 | 1.797 | 8.80 | 9.89 | 9.5 | 90.1 | 0.4 | -4.14 | 0.73 | 0.83 | 2.12 | 3.1 | 0.004 | 0.64 | 0.0 | 0.04 | 17.97 | 0.00 | 1.819 | 8.19 | 0.47 | 8.8 | 91.0 | 0.2 | -1.70 | 1.42 | 0.75 | 0.86 | 1.91 | 133299 | 8031 | 52 | 3241 | 7 | 0 | 0 | logfile |
✔ | 5o60 | 3750 | 2023-11-21 | 2017-06-02 | 3.18 | 3.26 | — | 3.2 | 0.008 | 1.12 | 0.0 | 0.05 | 17.44 | 0.01 | 1.463 | 7.03 | 10.34 | 4.2 | 95.6 | 0.2 | -3.02 | 0.76 | 0.89 | 2.25 | 3.2 | 0.005 | 0.67 | 0.0 | 0.04 | 17.05 | 0.01 | 1.791 | 10.58 | 0.65 | 4.6 | 95.4 | 0.0 | -0.63 | 0.60 | 0.75 | 0.87 | 1.96 | 98153 | 3682 | 47 | 3240 | 412 | 0 | 0 | logfile |
✔ | 6DZP | 8937 | 2023-11-21 | 2018-07-05 | 3.42 | 3.50 | — | 3.4 | 0.012 | 1.08 | 1.0 | 0.06 | 15.97 | 0.01 | 1.028 | 6.73 | 0.60 | 9.8 | 89.2 | 1.0 | -4.67 | 0.79 | 0.82 | 3.24 | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 16.07 | 0.00 | 2.060 | 8.94 | 0.60 | 6.4 | 93.5 | 0.1 | -1.14 | 3.28 | 0.82 | 0.86 | 2.43 | 98097 | 3715 | 34 | 3237 | 0 | 0 | 0 | logfile |
✔ | 7Y41 | 33599 | 2023-11-21 | 2022-06-13 | 4.1 | 4.02 | 3.07 | 3.4 | 0.004 | 0.63 | 0.0 | 0.03 | 16.59 | 0.01 | 1.204 | 15.20 | 0.00 | 4.4 | 95.6 | 0.0 | -0.39 | 0.87 | 0.86 | — | 3.4 | 0.005 | 0.65 | 0.0 | 0.04 | 16.35 | 0.01 | 1.024 | 15.19 | 0.00 | 5.1 | 94.9 | 0.0 | -0.58 | 1.48 | 0.88 | 0.87 | — | 97056 | 3529 | 46 | 3237 | 411 | 0 | 0 | logfile |
✘ | 7S0S | 24792 | 2023-11-22 | 2021-08-31 | 3.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.73 | — | — | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100057 | 3946 | 46 | 3236 | 407 | 0 | 0 | logfile |
✔ | 5V7Q | 8641 | 2023-11-21 | 2017-03-20 | 3.7 | 3.74 | — | 3.7 | 0.007 | 0.90 | 0.0 | 0.05 | 11.17 | 0.01 | 2.022 | 3.00 | 0.00 | 10.2 | 89.2 | 0.6 | -2.24 | 0.78 | 0.76 | 1.68 | 3.7 | 0.007 | 0.77 | 0.0 | 0.04 | 14.99 | 0.01 | 1.977 | 16.94 | 1.23 | 11.2 | 88.6 | 0.2 | -2.26 | 1.60 | 0.80 | 0.81 | 1.14 | 94306 | 3216 | 32 | 3233 | 1 | 0 | 0 | logfile |
✔ | 7F0D | 31398 | 2023-11-21 | 2021-06-03 | 3.3 | 3.34 | — | 3.3 | 0.009 | 1.04 | 0.0 | 0.09 | 18.47 | 0.01 | 1.984 | 20.01 | 1.00 | 20.5 | 79.1 | 0.4 | -5.56 | 0.58 | 0.76 | 2.20 | 3.3 | 0.007 | 0.85 | 0.0 | 0.05 | 17.73 | 0.01 | 1.965 | 17.48 | 1.12 | 15.5 | 84.4 | 0.1 | -3.44 | 0.34 | 0.59 | 0.77 | 1.64 | 94362 | 3216 | 32 | 3233 | 2 | 3 | 0 | logfile |
✔ | 5ZET | 6922 | 2023-11-21 | 2018-02-28 | 3.2 | 3.44 | — | 3.4 | 0.012 | 1.22 | 3.0 | 0.06 | 16.75 | 0.01 | 1.189 | 18.16 | 3.90 | 7.9 | 90.7 | 1.4 | -3.69 | 0.68 | 0.74 | 2.06 | 3.4 | 0.007 | 0.85 | 0.0 | 0.05 | 17.04 | 0.01 | 1.926 | 13.71 | 1.12 | 9.3 | 90.3 | 0.4 | -2.27 | 1.98 | 0.69 | 0.80 | 2.08 | 97374 | 3689 | 34 | 3219 | 0 | 0 | 0 | logfile |
✔ | 6XZ7 | 10655 | 2023-11-21 | 2020-02-03 | 2.1 | 2.05 | 2.12 | 2.1 | 0.010 | 0.84 | 1.0 | 0.05 | 14.69 | 0.04 | 1.564 | 6.31 | 3.26 | 2.8 | 96.8 | 0.4 | -2.20 | 0.41 | 0.69 | 5.50 | 2.1 | 0.004 | 0.81 | 0.0 | 0.04 | 14.93 | 0.01 | 1.764 | 5.79 | 2.44 | 2.1 | 97.7 | 0.1 | 0.26 | 0.92 | 0.69 | 0.90 | 5.28 | 94915 | 3351 | 45 | 3169 | 179 | 528 | 0 | logfile |
✔ | 8EUG | 24412 | 2023-11-17 | 2022-10-18 | 2.8 | 2.82 | — | 2.8 | 0.005 | 0.53 | 0.0 | 0.03 | 15.48 | 0.00 | 2.091 | 7.67 | 0.47 | 3.5 | 96.2 | 0.3 | -0.23 | 0.81 | 0.81 | 3.22 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 15.81 | 0.00 | 2.041 | 9.93 | 1.54 | 3.9 | 95.9 | 0.2 | 0.09 | 0.30 | 0.81 | 0.82 | 3.05 | 123162 | 7108 | 47 | 3138 | 1 | 0 | 0 | logfile |
✔ | 8EUi | 24423 | 2023-11-17 | 2022-10-18 | 3.1 | 3.13 | — | 3.1 | 0.004 | 0.52 | 0.0 | 0.03 | 15.20 | 0.00 | 2.143 | 7.87 | 0.18 | 3.8 | 96.2 | 0.1 | -0.02 | 0.82 | 0.81 | 3.11 | 3.1 | 0.008 | 0.72 | 0.0 | 0.05 | 15.56 | 0.01 | 2.025 | 8.95 | 0.32 | 4.6 | 95.4 | 0.0 | 0.09 | 0.27 | 0.83 | 0.83 | 2.71 | 122892 | 7155 | 47 | 3131 | 1 | 0 | 0 | logfile |
✔ | 7AQD | 11864 | 2023-11-21 | 2020-10-21 | 3.1 | 3.48 | — | 3.2 | 0.005 | 1.09 | 11.0 | 0.05 | 16.55 | 0.01 | 0.152 | 6.41 | 1.12 | 5.2 | 94.5 | 0.3 | -2.11 | 0.78 | 0.72 | 1.63 | 3.2 | 0.008 | 0.72 | 0.0 | 0.04 | 17.24 | 0.01 | 1.873 | 15.28 | 0.61 | 7.2 | 92.7 | 0.1 | -1.22 | 2.50 | 0.90 | 0.90 | 1.83 | 94357 | 3543 | 32 | 3106 | 0 | 0 | 0 | logfile |
✔ | 8CVM | 27009 | 2023-11-21 | 2022-05-18 | 2.66 | 3.07 | 2.71 | 2.9 | 0.007 | 0.67 | 1.0 | 0.06 | 15.38 | 0.02 | 1.748 | 8.51 | 2.09 | 5.7 | 93.1 | 1.2 | -0.39 | 0.86 | 0.91 | 3.77 | 2.9 | 0.003 | 0.69 | 0.0 | 0.04 | 16.07 | 0.01 | 1.877 | 10.92 | 2.79 | 5.7 | 93.9 | 0.5 | -0.29 | 1.55 | 0.86 | 0.92 | 3.45 | 93049 | 3334 | 47 | 3099 | 310 | 125 | 0 | logfile |
✔ | 7ZoD | 14846 | 2023-11-20 | 2022-04-25 | 2.56 | 2.48 | 2.58 | 2.7 | 0.010 | 0.86 | 4.0 | 0.06 | 17.35 | 0.01 | 1.835 | 8.12 | 3.44 | 6.1 | 93.6 | 0.3 | -1.02 | 0.47 | 0.64 | 2.79 | 2.6 | 0.006 | 0.75 | 0.0 | 0.04 | 16.94 | 0.01 | 2.056 | 7.68 | 4.87 | 5.4 | 94.5 | 0.1 | -0.76 | 0.54 | 0.70 | 0.87 | 3.73 | 90702 | 3113 | 31 | 3096 | 0 | 0 | 0 | logfile |
✔ | 7Z20 | 14454 | 2023-11-20 | 2022-02-25 | 2.29 | 2.70 | — | 2.5 | 0.009 | 0.78 | 2.0 | 0.06 | 16.72 | 0.01 | 2.134 | 6.28 | 2.34 | 4.9 | 95.0 | 0.2 | -0.59 | 0.72 | 0.82 | 3.85 | 2.6 | 0.005 | 0.64 | 0.0 | 0.04 | 16.11 | 0.01 | 2.028 | 5.89 | 3.83 | 4.2 | 95.7 | 0.1 | -0.04 | 1.09 | 0.75 | 0.87 | 4.13 | 91024 | 3153 | 32 | 3096 | 0 | 0 | 0 | logfile |
✘ | 7ZQ6 | 14865 | 2023-11-20 | 2022-04-29 | 2.75 | 3.18 | 3.04 | 2.9 | 0.009 | 0.93 | 2.0 | 0.08 | 17.78 | 0.00 | 2.140 | 5.42 | 3.67 | 5.0 | 94.8 | 0.2 | -0.70 | 0.76 | 0.85 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90507 | 3091 | 32 | 3095 | 0 | 0 | 0 | logfile |
✘ | 7ZP8 | 14850 | 2023-11-20 | 2022-04-26 | 2.2 | 3.37 | 2.30 | 2.5 | 0.008 | 1.05 | 2.0 | 0.11 | 19.16 | 0.00 | 1.813 | 5.05 | 1.68 | 4.7 | 95.1 | 0.2 | -0.45 | 0.78 | 0.87 | 4.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90951 | 3145 | 32 | 3095 | 0 | 0 | 0 | logfile |
✔ | 6QDW | 4531 | 2023-11-20 | 2019-01-03 | 2.83 | 2.94 | 2.82 | 2.9 | 0.013 | 1.10 | 0.0 | 0.06 | 17.39 | 0.01 | 1.901 | 6.27 | 1.25 | 7.1 | 92.7 | 0.2 | -4.19 | 0.71 | 0.83 | 2.54 | 2.9 | 0.005 | 0.66 | 0.0 | 0.04 | 17.10 | 0.01 | 1.851 | 10.11 | 3.52 | 5.9 | 94.1 | 0.0 | -1.33 | 1.27 | 0.77 | 0.89 | 3.34 | 90690 | 3127 | 32 | 3081 | 0 | 0 | 0 | logfile |