Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5XXB	6778	2023-11-16	2017-07-03	3.17	3.22	—	3.2	0.006	1.07	5.0	0.09	17.43	0.00	1.261	4.91	4.74	7.1	91.3	1.5	-3.54	0.65	0.77	2.19	3.2	0.006	0.72	0.0	0.04	16.77	0.01	2.019	8.94	0.86	6.9	92.6	0.5	-1.18	0.63	0.81	0.87	1.82	121433	6215	44	3352	0	0	0	logfile
✔	6N8J	0369	2023-11-18	2018-11-29	3.5	3.75	—	3.6	0.007	0.95	0.0	0.05	15.15	0.01	1.297	3.61	0.51	7.3	92.4	0.3	-4.65	0.82	0.87	3.28	3.6	0.004	0.64	0.0	0.04	15.99	0.00	1.839	9.67	0.53	8.3	91.5	0.1	-1.32	1.26	0.81	0.87	2.21	132554	7675	51	3326	96	0	0	logfile
✔	7BT6	30170	2023-11-18	2020-03-31	3.12	3.18	—	3.1	0.006	0.77	0.0	0.04	18.45	0.01	1.797	8.80	9.89	9.5	90.1	0.4	-4.14	0.73	0.83	2.12	3.1	0.004	0.64	0.0	0.04	17.97	0.00	1.819	8.19	0.47	8.8	91.0	0.2	-1.70	1.42	0.75	0.86	1.91	133299	8031	52	3241	7	0	0	logfile
✔	5o60	3750	2023-11-21	2017-06-02	3.18	3.26	—	3.2	0.008	1.12	0.0	0.05	17.44	0.01	1.463	7.03	10.34	4.2	95.6	0.2	-3.02	0.76	0.89	2.25	3.2	0.005	0.67	0.0	0.04	17.05	0.01	1.791	10.58	0.65	4.6	95.4	0.0	-0.63	0.60	0.75	0.87	1.96	98153	3682	47	3240	412	0	0	logfile
✔	6DZP	8937	2023-11-21	2018-07-05	3.42	3.50	—	3.4	0.012	1.08	1.0	0.06	15.97	0.01	1.028	6.73	0.60	9.8	89.2	1.0	-4.67	0.79	0.82	3.24	3.4	0.005	0.63	0.0	0.04	16.07	0.00	2.060	8.94	0.60	6.4	93.5	0.1	-1.14	3.28	0.82	0.86	2.43	98097	3715	34	3237	0	0	0	logfile
✔	7Y41	33599	2023-11-21	2022-06-13	4.1	4.02	3.07	3.4	0.004	0.63	0.0	0.03	16.59	0.01	1.204	15.20	0.00	4.4	95.6	0.0	-0.39	0.87	0.86	—	3.4	0.005	0.65	0.0	0.04	16.35	0.01	1.024	15.19	0.00	5.1	94.9	0.0	-0.58	1.48	0.88	0.87	—	97056	3529	46	3237	411	0	0	logfile
✘	7S0S	24792	2023-11-22	2021-08-31	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.73	—	—	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100057	3946	46	3236	407	0	0	logfile
✔	5V7Q	8641	2023-11-21	2017-03-20	3.7	3.74	—	3.7	0.007	0.90	0.0	0.05	11.17	0.01	2.022	3.00	0.00	10.2	89.2	0.6	-2.24	0.78	0.76	1.68	3.7	0.007	0.77	0.0	0.04	14.99	0.01	1.977	16.94	1.23	11.2	88.6	0.2	-2.26	1.60	0.80	0.81	1.14	94306	3216	32	3233	1	0	0	logfile
✔	7F0D	31398	2023-11-21	2021-06-03	3.3	3.34	—	3.3	0.009	1.04	0.0	0.09	18.47	0.01	1.984	20.01	1.00	20.5	79.1	0.4	-5.56	0.58	0.76	2.20	3.3	0.007	0.85	0.0	0.05	17.73	0.01	1.965	17.48	1.12	15.5	84.4	0.1	-3.44	0.34	0.59	0.77	1.64	94362	3216	32	3233	2	3	0	logfile
✔	5ZET	6922	2023-11-21	2018-02-28	3.2	3.44	—	3.4	0.012	1.22	3.0	0.06	16.75	0.01	1.189	18.16	3.90	7.9	90.7	1.4	-3.69	0.68	0.74	2.06	3.4	0.007	0.85	0.0	0.05	17.04	0.01	1.926	13.71	1.12	9.3	90.3	0.4	-2.27	1.98	0.69	0.80	2.08	97374	3689	34	3219	0	0	0	logfile
✔	6XZ7	10655	2023-11-21	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.84	1.0	0.05	14.69	0.04	1.564	6.31	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.004	0.81	0.0	0.04	14.93	0.01	1.764	5.79	2.44	2.1	97.7	0.1	0.26	0.92	0.69	0.90	5.28	94915	3351	45	3169	179	528	0	logfile
✔	8EUG	24412	2023-11-17	2022-10-18	2.8	2.82	—	2.8	0.005	0.53	0.0	0.03	15.48	0.00	2.091	7.67	0.47	3.5	96.2	0.3	-0.23	0.81	0.81	3.22	2.8	0.003	0.59	0.0	0.04	15.81	0.00	2.041	9.93	1.54	3.9	95.9	0.2	0.09	0.30	0.81	0.82	3.05	123162	7108	47	3138	1	0	0	logfile
✔	8EUi	24423	2023-11-17	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.008	0.72	0.0	0.05	15.56	0.01	2.025	8.95	0.32	4.6	95.4	0.0	0.09	0.27	0.83	0.83	2.71	122892	7155	47	3131	1	0	0	logfile
✔	7AQD	11864	2023-11-21	2020-10-21	3.1	3.48	—	3.2	0.005	1.09	11.0	0.05	16.55	0.01	0.152	6.41	1.12	5.2	94.5	0.3	-2.11	0.78	0.72	1.63	3.2	0.008	0.72	0.0	0.04	17.24	0.01	1.873	15.28	0.61	7.2	92.7	0.1	-1.22	2.50	0.90	0.90	1.83	94357	3543	32	3106	0	0	0	logfile
✔	8CVM	27009	2023-11-21	2022-05-18	2.66	3.07	2.71	2.9	0.007	0.67	1.0	0.06	15.38	0.02	1.748	8.51	2.09	5.7	93.1	1.2	-0.39	0.86	0.91	3.77	2.9	0.003	0.69	0.0	0.04	16.07	0.01	1.877	10.92	2.79	5.7	93.9	0.5	-0.29	1.55	0.86	0.92	3.45	93049	3334	47	3099	310	125	0	logfile
✔	7ZoD	14846	2023-11-20	2022-04-25	2.56	2.48	2.58	2.7	0.010	0.86	4.0	0.06	17.35	0.01	1.835	8.12	3.44	6.1	93.6	0.3	-1.02	0.47	0.64	2.79	2.6	0.006	0.75	0.0	0.04	16.94	0.01	2.056	7.68	4.87	5.4	94.5	0.1	-0.76	0.54	0.70	0.87	3.73	90702	3113	31	3096	0	0	0	logfile
✔	7Z20	14454	2023-11-20	2022-02-25	2.29	2.70	—	2.5	0.009	0.78	2.0	0.06	16.72	0.01	2.134	6.28	2.34	4.9	95.0	0.2	-0.59	0.72	0.82	3.85	2.6	0.005	0.64	0.0	0.04	16.11	0.01	2.028	5.89	3.83	4.2	95.7	0.1	-0.04	1.09	0.75	0.87	4.13	91024	3153	32	3096	0	0	0	logfile
✘	7ZQ6	14865	2023-11-20	2022-04-29	2.75	3.18	3.04	2.9	0.009	0.93	2.0	0.08	17.78	0.00	2.140	5.42	3.67	5.0	94.8	0.2	-0.70	0.76	0.85	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90507	3091	32	3095	0	0	0	logfile
✘	7ZP8	14850	2023-11-20	2022-04-26	2.2	3.37	2.30	2.5	0.008	1.05	2.0	0.11	19.16	0.00	1.813	5.05	1.68	4.7	95.1	0.2	-0.45	0.78	0.87	4.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90951	3145	32	3095	0	0	0	logfile
✔	6QDW	4531	2023-11-20	2019-01-03	2.83	2.94	2.82	2.9	0.013	1.10	0.0	0.06	17.39	0.01	1.901	6.27	1.25	7.1	92.7	0.2	-4.19	0.71	0.83	2.54	2.9	0.005	0.66	0.0	0.04	17.10	0.01	1.851	10.11	3.52	5.9	94.1	0.0	-1.33	1.27	0.77	0.89	3.34	90690	3127	32	3081	0	0	0	logfile

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