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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7EG0 | 31103 | 2024-04-09 | 2021-03-23 | 3.4 | 3.09 | — | 3.3 | 0.009 | 0.78 | 0.0 | 0.05 | 14.94 | 0.00 | 1.975 | 20.60 | 0.12 | 13.9 | 86.0 | 0.1 | -2.98 | 0.74 | 0.79 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15246 | 1878 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 6R10 | 4703 | 2024-04-16 | 2019-03-13 | 4.3 | 4.31 | — | 4.2 | 0.007 | 0.96 | 0.0 | 0.06 | 9.71 | 0.01 | 2.155 | 5.28 | 0.11 | 7.6 | 92.4 | 0.0 | -3.74 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38522 | 5842 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 7D3S | 30566 | 2024-04-06 | 2020-09-20 | 2.9 | 2.73 | 2.75 | 2.8 | 0.004 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.237 | 10.24 | 0.00 | 4.0 | 96.0 | 0.0 | -2.28 | 0.56 | 0.75 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8338 | 1048 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6FSZ | 4301 | 2024-04-16 | 2018-02-20 | 4.6 | 4.95 | — | 4.7 | 0.010 | 1.25 | 0.0 | 0.06 | 11.08 | 0.01 | 2.147 | 13.08 | 0.26 | 7.3 | 92.7 | 0.0 | -3.42 | 0.88 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36972 | 4821 | 15 | 23 | 11 | 0 | 0 | logfile |
✘ | 5MMi | 3531 | 2024-04-14 | 2016-12-10 | 3.2 | 3.30 | — | 3.2 | 0.008 | 1.15 | 0.0 | 0.05 | 23.87 | 0.01 | 1.753 | 7.92 | 9.25 | 5.3 | 94.4 | 0.3 | -3.29 | 0.89 | 0.88 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 95397 | 3769 | 56 | 3027 | 503 | 0 | 0 | logfile |
✘ | 7ZZ3 | 15033 | 2024-04-15 | 2022-05-25 | 2.41 | 2.71 | 2.40 | 2.4 | 0.006 | 0.86 | 0.0 | 0.05 | 17.24 | 0.00 | 2.065 | 4.87 | 1.75 | 2.5 | 97.5 | 0.0 | -1.03 | 0.93 | 0.90 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34427 | 4311 | 12 | 0 | 26 | 166 | 0 | logfile |
✘ | 6GEN | 4396 | 2024-04-17 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.64 | 0.01 | 2.109 | 5.89 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2024-04-12 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 3JC6 | 6534 | 2024-04-11 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 6UXB | 20932 | 2024-04-07 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JNA | 22403 | 2024-04-06 | 2020-08-04 | 3.6 | 3.74 | — | 3.8 | 0.005 | 0.72 | 0.0 | 0.05 | 12.95 | 0.03 | 2.215 | 12.10 | 0.00 | 4.3 | 95.7 | 0.0 | -3.83 | 0.63 | 0.71 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6432 | 834 | 9 | 0 | 15 | 0 | 0 | logfile |
✘ | 6UC2 | 20725 | 2024-04-13 | 2019-09-13 | 4.48 | 5.01 | 4.26 | 4.8 | 0.016 | 1.93 | 0.0 | 0.08 | 20.47 | 0.01 | 2.208 | 11.97 | 14.82 | 7.6 | 92.4 | 0.0 | -4.41 | 0.61 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28408 | 3624 | 16 | 0 | 24 | 0 | 0 | logfile |
✘ | 7oY8 | 13110 | 2024-04-11 | 2021-06-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22902 | 2293 | 103 | 0 | 68 | 372 | 0 | logfile |
✘ | 8A5E | 15166 | 2024-04-08 | 2022-06-14 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13611 | 1769 | 8 | 0 | 19 | 0 | 0 | logfile |
✘ | 6Qi8 | 4552 | 2024-04-08 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 6JZo | 9898 | 2024-04-11 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6U5R | 20653 | 2024-04-09 | 2019-08-28 | 3.6 | 3.71 | — | 3.6 | 0.011 | 0.96 | 0.0 | 0.06 | 14.54 | 0.01 | 1.768 | 5.21 | 0.23 | 6.2 | 93.8 | 0.0 | -4.18 | 0.73 | 0.85 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16516 | 2156 | 24 | 0 | 8 | 8 | 0 | logfile |
✘ | 7ZYY | 15028 | 2024-04-15 | 2022-05-25 | 2.12 | 2.40 | 2.14 | 2.1 | 0.007 | 0.89 | 0.0 | 0.05 | 17.50 | 0.00 | 2.008 | 4.42 | 1.19 | 2.4 | 97.6 | 0.0 | -0.65 | 0.91 | 0.89 | 4.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33924 | 4224 | 12 | 0 | 28 | 324 | 0 | logfile |
✘ | 7YZP | 14393 | 2024-04-10 | 2022-02-21 | 4.0 | 4.15 | 4.02 | 4.0 | 0.003 | 0.62 | 1.0 | 0.04 | 17.72 | 0.00 | 1.593 | 8.32 | 0.00 | 4.2 | 95.8 | 0.0 | 0.73 | 0.83 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14107 | 1633 | 9 | 59 | 8 | 0 | 0 | logfile |
✘ | 7EJ1 | 31148 | 2024-04-11 | 2021-04-01 | 3.2 | 3.37 | — | 3.3 | 0.011 | 1.03 | 0.0 | 0.06 | 16.48 | 0.01 | 2.243 | 6.80 | 0.00 | 4.8 | 95.0 | 0.1 | -5.79 | 0.83 | 0.86 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21236 | 2740 | 12 | 0 | 4 | 0 | 0 | logfile |