Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A6E	3062	2023-04-22	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	6HD5	0201	2023-04-21	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7N5F	24188	2023-04-19	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	5MS1	3562	2023-04-20	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.79	0.00	2.136	9.78	0.00	2.9	97.1	0.0	-0.39	1.54	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	7S4M	24831	2023-04-26	2021-09-09	2.42	3.75	—	3.8	0.007	0.93	2.0	0.05	18.77	0.01	2.015	13.81	6.06	5.5	94.0	0.4	-0.17	0.37	0.60	2.25	3.8	0.003	0.65	0.0	0.04	17.84	0.01	2.084	12.56	4.22	6.2	93.8	0.0	-0.44	0.65	0.44	0.73	2.21	21729	2619	31	0	84	36	0	logfile
✔	8A05	15048	2023-04-19	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.47	0.0	0.05	14.61	0.00	2.266	4.03	0.00	2.2	97.8	0.0	0.40	1.25	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7CG0	30348	2023-04-21	2020-06-30	3.2	3.51	—	3.5	0.003	0.53	0.0	0.04	11.23	0.00	1.992	8.37	2.56	3.0	97.0	0.0	3.52	0.37	0.79	1.26	3.5	0.003	0.69	0.0	0.04	16.05	0.00	2.053	11.09	0.88	2.7	97.3	0.0	2.95	0.86	0.39	0.83	1.21	10928	1412	21	0	75	0	0	logfile
✔	8BC1	15959	2023-04-20	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.81	0.0	0.04	15.72	0.01	2.131	15.98	2.25	4.8	95.2	0.0	0.67	1.04	0.40	0.54	1.03	8684	1054	4	0	6	0	0	logfile
✘	6JP8	9867	2023-04-26	2019-03-26	2.7	2.51	—	2.6	0.013	1.48	8.0	0.12	14.01	0.01	1.877	25.96	6.07	7.2	92.3	0.5	-4.05	0.38	0.52	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21801	2694	14	0	29	0	0	logfile
✔	8F7J	28905	2023-04-20	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	7DNL	30787	2023-04-26	2020-12-09	4.19	4.89	—	4.7	0.005	1.03	0.0	0.06	14.88	0.01	1.747	6.63	0.57	7.3	92.6	0.1	-4.29	0.38	0.78	—	4.7	0.004	0.75	0.0	0.05	13.63	0.01	1.969	18.07	0.04	9.1	90.9	0.0	-2.49	0.75	0.38	0.79	—	21847	2769	7	0	0	0	0	logfile
✔	6LYY	30019	2023-04-20	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.003	0.73	0.0	0.04	15.57	0.00	2.234	10.71	1.20	4.9	95.1	0.0	0.23	1.65	0.46	0.67	1.62	4104	597	3	0	1	0	0	logfile
✔	7TQU	26072	2023-04-25	2022-01-27	3.8	3.89	3.57	3.8	0.021	1.81	0.0	0.10	9.74	0.01	2.375	0.92	0.00	2.1	97.9	0.0	0.71	0.38	0.84	3.42	3.8	0.005	0.70	0.0	0.05	15.22	0.00	2.091	12.13	0.72	3.9	96.1	0.0	-0.65	0.82	0.36	0.84	2.74	20891	2544	17	0	217	0	0	logfile
✔	6L31	0816	2023-04-25	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.77	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.9	0.005	0.86	0.0	0.05	14.12	0.01	1.950	28.23	0.04	12.5	87.4	0.1	-3.26	2.40	0.38	0.72	—	20905	2670	6	0	0	0	0	logfile
✔	7ZSD	14930	2023-04-19	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	14.29	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.66	0.0	0.05	14.79	0.00	2.257	12.46	0.90	7.0	93.0	0.0	-0.57	0.39	0.39	0.78	1.13	2120	261	3	0	2	0	0	logfile
✔	7FG2	31574	2023-04-21	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	6QPi	4614	2023-04-19	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	6S6L	10103	2023-04-22	2019-07-03	3.1	2.99	2.95	2.9	0.014	1.12	0.0	0.07	9.31	0.01	2.263	5.39	0.16	5.3	94.7	0.0	-2.85	0.39	0.65	3.67	2.9	0.002	0.59	0.0	0.04	12.12	0.01	2.158	8.90	0.24	3.5	96.5	0.0	-0.82	0.55	0.40	0.66	2.99	11587	1510	3	0	0	0	0	logfile
✔	7WQ3	32698	2023-04-21	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	8.04	0.00	2.189	5.16	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.003	0.62	0.0	0.04	15.73	0.00	2.165	7.11	2.94	2.4	97.6	0.0	0.81	1.89	0.64	0.82	3.09	9209	1160	7	0	5	0	0	logfile
✔	6DU8	8912	2023-04-22	2018-06-20	3.11	3.84	—	3.8	0.007	1.14	0.0	0.08	12.57	0.01	2.046	7.99	0.89	8.8	91.2	0.0	-4.81	0.39	0.59	3.01	3.8	0.004	0.82	0.0	0.05	15.41	0.00	2.067	12.36	0.07	9.7	90.3	0.0	-1.96	0.58	0.41	0.62	2.19	13380	1684	8	0	4	0	0	logfile

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