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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DLU | 7957 | 2022-12-12 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.94 | 0.0 | 0.05 | 9.95 | 0.00 | 1.944 | 12.65 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 13.91 | 0.00 | 1.941 | 9.28 | 0.23 | 5.3 | 94.7 | 0.0 | 0.08 | 2.20 | 0.32 | 0.82 | 1.35 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7RTN | 24684 | 2022-12-11 | 2021-08-13 | 3.4 | 3.47 | — | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 14.58 | 0.00 | 2.298 | 6.11 | 0.00 | 6.1 | 93.9 | 0.0 | 0.60 | 0.31 | 0.74 | 3.40 | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 16.51 | 0.00 | 2.269 | 7.51 | 0.00 | 4.3 | 95.7 | 0.0 | 1.39 | 0.36 | 0.31 | 0.79 | 2.76 | 6018 | 810 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2022-12-14 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 19.81 | 0.01 | 1.715 | 4.58 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.004 | 0.75 | 0.0 | 0.04 | 18.09 | 0.01 | 1.827 | 17.88 | 1.22 | 9.1 | 89.6 | 1.2 | -1.88 | 2.71 | 0.40 | 0.78 | 1.11 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2022-12-13 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.76 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.003 | 0.68 | 0.0 | 0.04 | 15.78 | 0.00 | 1.238 | 14.34 | 0.50 | 5.8 | 94.2 | 0.0 | -1.59 | 1.27 | 0.39 | 0.19 | 0.68 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 3JC1 | 6461 | 2022-12-16 | 2015-11-09 | 4.0 | 4.30 | — | 4.3 | 0.009 | 1.19 | 0.0 | 0.05 | 10.37 | 0.00 | 2.291 | 8.81 | 0.00 | 3.8 | 96.2 | 0.0 | -3.91 | 0.31 | 0.59 | — | 4.3 | 0.005 | 0.74 | 0.0 | 0.04 | 16.24 | 0.00 | 2.100 | 11.08 | 0.75 | 1.9 | 98.1 | 0.0 | 3.18 | 1.24 | 0.45 | 0.76 | — | 92106 | 11628 | 68 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QK5 | 14038 | 2022-12-12 | 2021-12-17 | 1.92 | 1.67 | 1.83 | 2.2 | 0.011 | 1.89 | 4.0 | 0.10 | 10.96 | 0.01 | 2.401 | 0.67 | 0.00 | 4.5 | 95.5 | 0.0 | -1.58 | 0.32 | 0.78 | 6.85 | 2.2 | 0.004 | 0.64 | 0.0 | 0.05 | 18.34 | 0.01 | 2.238 | 4.68 | 2.74 | 3.7 | 96.3 | 0.0 | -1.87 | 1.49 | 0.36 | 0.82 | 7.41 | 10485 | 666 | 18 | 0 | 36 | 0 | 5337 | logfile |
✔ | 6R4R | 4727 | 2022-12-11 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.7 | 0.005 | 0.82 | 0.0 | 0.05 | 16.51 | 0.00 | 2.111 | 15.74 | 2.27 | 9.1 | 90.9 | 0.0 | -4.78 | 3.89 | 0.31 | 0.67 | 3.65 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZFW | 14704 | 2022-12-13 | 2022-04-01 | 3.8 | 4.62 | 3.46 | 3.0 | 0.007 | 0.80 | 0.0 | 0.05 | 17.76 | 0.03 | 2.266 | 2.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.81 | — | 3.0 | 0.009 | 0.88 | 0.0 | 0.04 | 20.35 | 0.01 | 1.947 | 37.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.54 | 0.33 | 0.85 | — | 13188 | 0 | 1 | 615 | 0 | 0 | 0 | logfile |
✔ | 5M3L | 3434 | 2022-12-14 | 2016-10-15 | 3.8 | 2.49 | — | 3.8 | 0.013 | 1.53 | 7.0 | 0.08 | 12.48 | 0.01 | 1.442 | 10.31 | 0.59 | 7.4 | 91.5 | 1.1 | -4.86 | 0.32 | 0.76 | 2.04 | 3.6 | 0.004 | 0.77 | 0.0 | 0.04 | 17.17 | 0.00 | 2.042 | 11.90 | 0.54 | 5.4 | 94.5 | 0.2 | -0.45 | 0.91 | 0.34 | 0.75 | 1.48 | 19007 | 2394 | 27 | 0 | 12 | 0 | 0 | logfile |
✔ | 7RTo | 24685 | 2022-12-11 | 2021-08-13 | 3.8 | 3.83 | — | 3.8 | 0.004 | 0.82 | 0.0 | 0.05 | 14.32 | 0.00 | 2.200 | 8.55 | 0.16 | 5.6 | 94.4 | 0.0 | 1.09 | 0.32 | 0.76 | 2.41 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.52 | 0.00 | 2.246 | 8.71 | 0.49 | 5.4 | 94.6 | 0.0 | 1.37 | 1.46 | 0.32 | 0.78 | 1.87 | 6607 | 888 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K23 | 22641 | 2022-12-14 | 2020-09-08 | 3.3 | 3.44 | 3.16 | 3.4 | 0.007 | 0.81 | 0.0 | 0.05 | 17.18 | 0.00 | 1.620 | 19.51 | 5.40 | 9.3 | 90.5 | 0.2 | -3.86 | 0.32 | 0.62 | 2.33 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 17.22 | 0.00 | 2.136 | 9.18 | 0.25 | 8.0 | 91.9 | 0.1 | -1.71 | 1.66 | 0.41 | 0.84 | 2.49 | 21923 | 2781 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2022-12-11 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.004 | 1.06 | 0.0 | 0.05 | 7.90 | 0.00 | 2.205 | 9.62 | 0.00 | 22.1 | 77.9 | 0.0 | -5.53 | 2.43 | 0.34 | 0.64 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2022-12-21 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.36 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.4 | 0.004 | 0.85 | 0.0 | 0.05 | 14.68 | 0.01 | 2.050 | 23.50 | 0.00 | 7.9 | 91.9 | 0.3 | -1.55 | 1.32 | 0.51 | 0.20 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 6HRE | 0259 | 2022-12-11 | 2018-09-26 | 3.2 | 2.74 | 2.87 | 3.3 | 0.019 | 1.47 | 0.0 | 0.11 | 13.34 | 0.01 | 2.474 | 6.57 | 0.00 | 12.0 | 88.0 | 0.0 | -4.17 | 0.32 | 0.80 | 4.40 | 2.8 | 0.007 | 0.94 | 0.0 | 0.05 | 17.28 | 0.00 | 2.123 | 9.50 | 0.50 | 9.3 | 90.7 | 0.0 | -3.49 | 0.81 | 0.29 | 0.78 | 3.87 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKY | 14057 | 2022-12-11 | 2021-12-19 | 1.86 | 2.10 | 1.91 | 2.0 | 0.011 | 1.75 | 3.0 | 0.09 | 12.76 | 0.01 | 2.522 | 1.04 | 0.61 | 4.7 | 95.3 | 0.0 | -3.08 | 0.33 | 0.75 | 8.32 | 2.0 | 0.003 | 0.69 | 0.0 | 0.05 | 16.56 | 0.00 | 2.218 | 4.85 | 0.61 | 6.2 | 93.8 | 0.0 | -3.18 | 1.00 | 0.39 | 0.84 | 7.35 | 5760 | 396 | 6 | 0 | 0 | 0 | 2862 | logfile |
✔ | 7oZH | 13124 | 2022-12-11 | 2021-06-28 | 3.02 | 3.20 | 1.84 | 3.3 | 0.024 | 1.40 | 0.0 | 0.09 | 7.44 | 0.01 | 2.546 | 14.72 | 0.00 | 5.4 | 94.6 | 0.0 | -2.78 | 0.33 | 0.60 | 4.68 | 3.3 | 0.005 | 0.74 | 0.0 | 0.05 | 14.80 | 0.00 | 2.352 | 19.62 | 0.77 | 10.2 | 89.8 | 0.0 | -2.61 | 2.54 | 0.40 | 0.70 | 1.11 | 3890 | 580 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H0R | 9564 | 2022-12-13 | 2016-10-06 | 3.9 | 3.72 | — | 3.7 | 0.008 | 0.81 | 0.0 | 0.05 | 10.30 | 0.00 | 1.744 | 20.03 | 0.28 | 8.5 | 91.4 | 0.1 | -4.11 | 0.33 | 0.70 | 1.99 | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 15.48 | 0.00 | 2.099 | 16.21 | 0.49 | 7.3 | 92.5 | 0.2 | -1.14 | 1.22 | 0.37 | 0.76 | 2.12 | 15037 | 1656 | 4 | 84 | 0 | 0 | 0 | logfile |
✔ | 7K8D | 22728 | 2022-12-12 | 2020-09-26 | 4.33 | 4.48 | — | 4.7 | 0.004 | 1.12 | 0.0 | 0.06 | 12.53 | 0.01 | 2.205 | 23.61 | 1.86 | 4.3 | 95.7 | 0.0 | -2.98 | 0.33 | 0.40 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 13.19 | 0.01 | 2.092 | 15.06 | 0.00 | 5.3 | 94.7 | 0.0 | 0.77 | 1.43 | 0.41 | 0.48 | — | 5529 | 725 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAJ | 7442 | 2022-12-15 | 2018-01-31 | 2.8 | 2.84 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 6.13 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.33 | 0.15 | 2.28 | 2.9 | 0.004 | 0.68 | 0.0 | 0.05 | 16.35 | 0.00 | 2.148 | 11.48 | 3.19 | 5.3 | 94.7 | 0.0 | -0.20 | 1.20 | 0.75 | 0.84 | 2.89 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7V49 | 31704 | 2022-12-11 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 15.37 | 0.00 | 2.440 | 9.23 | 0.00 | 15.5 | 84.5 | 0.0 | -5.85 | 1.27 | 0.46 | 0.75 | 5.63 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |