Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DLU	7957	2022-12-12	2018-06-02	3.75	3.84	—	3.8	0.009	0.94	0.0	0.05	9.95	0.00	1.944	12.65	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.70	0.0	0.04	13.91	0.00	1.941	9.28	0.23	5.3	94.7	0.0	0.08	2.20	0.32	0.82	1.35	11991	1481	4	0	4	0	0	logfile
✔	7RTN	24684	2022-12-11	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.11	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.51	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.79	2.76	6018	810	3	0	0	0	0	logfile
✔	3J7A	2660	2022-12-14	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.58	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.75	0.0	0.04	18.09	0.01	1.827	17.88	1.22	9.1	89.6	1.2	-1.88	2.71	0.40	0.78	1.11	68866	4106	35	1682	69	0	0	logfile
✔	5VZL	8749	2022-12-13	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.76	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.003	0.68	0.0	0.04	15.78	0.00	1.238	14.34	0.50	5.8	94.2	0.0	-1.59	1.27	0.39	0.19	0.68	13915	1451	3	115	1	0	0	logfile
✔	3JC1	6461	2022-12-16	2015-11-09	4.0	4.30	—	4.3	0.009	1.19	0.0	0.05	10.37	0.00	2.291	8.81	0.00	3.8	96.2	0.0	-3.91	0.31	0.59	—	4.3	0.005	0.74	0.0	0.04	16.24	0.00	2.100	11.08	0.75	1.9	98.1	0.0	3.18	1.24	0.45	0.76	—	92106	11628	68	0	0	0	0	logfile
✔	7QK5	14038	2022-12-12	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.67	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.34	0.01	2.238	4.68	2.74	3.7	96.3	0.0	-1.87	1.49	0.36	0.82	7.41	10485	666	18	0	36	0	5337	logfile
✔	6R4R	4727	2022-12-11	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.005	0.82	0.0	0.05	16.51	0.00	2.111	15.74	2.27	9.1	90.9	0.0	-4.78	3.89	0.31	0.67	3.65	4312	539	7	0	0	0	0	logfile
✔	7ZFW	14704	2022-12-13	2022-04-01	3.8	4.62	3.46	3.0	0.007	0.80	0.0	0.05	17.76	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.88	0.0	0.04	20.35	0.01	1.947	37.81	0.00	0.0	0.0	0.0	—	2.54	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	5M3L	3434	2022-12-14	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.31	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.004	0.77	0.0	0.04	17.17	0.00	2.042	11.90	0.54	5.4	94.5	0.2	-0.45	0.91	0.34	0.75	1.48	19007	2394	27	0	12	0	0	logfile
✔	7RTo	24685	2022-12-11	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.003	0.66	0.0	0.04	16.52	0.00	2.246	8.71	0.49	5.4	94.6	0.0	1.37	1.46	0.32	0.78	1.87	6607	888	3	0	0	0	0	logfile
✔	7K23	22641	2022-12-14	2020-09-08	3.3	3.44	3.16	3.4	0.007	0.81	0.0	0.05	17.18	0.00	1.620	19.51	5.40	9.3	90.5	0.2	-3.86	0.32	0.62	2.33	3.4	0.003	0.64	0.0	0.04	17.22	0.00	2.136	9.18	0.25	8.0	91.9	0.1	-1.71	1.66	0.41	0.84	2.49	21923	2781	15	0	0	0	0	logfile
✔	6XTB	10618	2022-12-11	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	6GYL	0091	2022-12-21	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.36	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.004	0.85	0.0	0.05	14.68	0.01	2.050	23.50	0.00	7.9	91.9	0.3	-1.55	1.32	0.51	0.20	—	43409	5250	30	112	11	0	0	logfile
✔	6HRE	0259	2022-12-11	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.57	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.50	0.50	9.3	90.7	0.0	-3.49	0.81	0.29	0.78	3.87	3522	462	6	0	0	0	0	logfile
✔	7QKY	14057	2022-12-11	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.003	0.69	0.0	0.05	16.56	0.00	2.218	4.85	0.61	6.2	93.8	0.0	-3.18	1.00	0.39	0.84	7.35	5760	396	6	0	0	0	2862	logfile
✔	7oZH	13124	2022-12-11	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.3	0.005	0.74	0.0	0.05	14.80	0.00	2.352	19.62	0.77	10.2	89.8	0.0	-2.61	2.54	0.40	0.70	1.11	3890	580	10	0	0	0	0	logfile
✔	5H0R	9564	2022-12-13	2016-10-06	3.9	3.72	—	3.7	0.008	0.81	0.0	0.05	10.30	0.00	1.744	20.03	0.28	8.5	91.4	0.1	-4.11	0.33	0.70	1.99	3.7	0.003	0.77	0.0	0.04	15.48	0.00	2.099	16.21	0.49	7.3	92.5	0.2	-1.14	1.22	0.37	0.76	2.12	15037	1656	4	84	0	0	0	logfile
✔	7K8D	22728	2022-12-12	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.19	0.01	2.092	15.06	0.00	5.3	94.7	0.0	0.77	1.43	0.41	0.48	—	5529	725	1	0	0	0	0	logfile
✔	6CAJ	7442	2022-12-15	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	6.13	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.004	0.68	0.0	0.05	16.35	0.00	2.148	11.48	3.19	5.3	94.7	0.0	-0.20	1.20	0.75	0.84	2.89	24295	3210	11	0	1	0	0	logfile
✔	7V49	31704	2022-12-11	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.75	0.0	0.05	15.37	0.00	2.440	9.23	0.00	15.5	84.5	0.0	-5.85	1.27	0.46	0.75	5.63	1221	180	3	0	0	0	0	logfile

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