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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6i1X | 0326 | 2022-12-19 | 2018-10-30 | 3.7 | 3.83 | — | 3.8 | 0.013 | 1.81 | 34.0 | 0.10 | 14.94 | 0.01 | 0.458 | 50.06 | 4.35 | 7.5 | 90.6 | 1.9 | -3.51 | 0.50 | 0.32 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54915 | 7290 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2022-12-12 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.52 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.003 | 0.76 | 0.0 | 0.04 | 11.92 | 0.00 | 2.175 | 17.10 | 0.00 | 5.1 | 94.8 | 0.1 | -0.25 | 2.04 | 0.45 | 0.55 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FDB | 31539 | 2022-12-13 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.65 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.004 | 0.86 | 1.0 | 0.05 | 13.79 | 0.01 | 1.984 | 28.58 | 0.01 | 7.4 | 92.5 | 0.0 | -1.72 | 2.25 | 0.77 | 0.68 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E5P | 27917 | 2022-12-14 | 2022-08-22 | 4.4 | 9.89 | 6.01 | 8.2 | 0.003 | 0.64 | 0.0 | 0.04 | 11.32 | 0.00 | 1.299 | 26.66 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.61 | 0.33 | — | 8.2 | 0.003 | 0.70 | 0.0 | 0.04 | 11.72 | 0.00 | 1.238 | 20.66 | 0.00 | 3.3 | 96.7 | 0.0 | 0.78 | 1.54 | 0.85 | 0.77 | — | 20038 | 2502 | 13 | 8 | 18 | 0 | 0 | logfile |
✘ | 7N9Y | 24264 | 2022-12-18 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2022-12-12 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.88 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.60 | 0.0 | 0.04 | 14.08 | 0.00 | 1.999 | 8.93 | 0.00 | 10.1 | 89.9 | 0.0 | -2.15 | 1.20 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 5YFP | 6827 | 2022-12-18 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.33 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.10 | 0.0 | 0.04 | 10.51 | 0.00 | 2.070 | 27.46 | 0.20 | 19.1 | 80.6 | 0.3 | -2.06 | 3.38 | 0.90 | 0.70 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Uo0 | 26636 | 2022-12-12 | 2022-04-12 | 3.4 | 4.47 | — | 3.5 | 0.003 | 2.23 | 0.0 | 0.11 | 24.66 | 0.00 | 2.117 | 7.29 | 2.04 | 6.4 | 93.6 | 0.0 | -0.20 | 0.73 | 0.34 | 1.64 | 3.5 | 0.004 | 0.84 | 0.0 | 0.04 | 26.56 | 0.01 | 2.056 | 21.42 | 1.02 | 5.5 | 94.5 | 0.0 | -2.80 | 4.77 | 0.84 | 0.62 | 1.06 | 10697 | 112 | 4 | 455 | 7 | 0 | 0 | logfile |
✔ | 7URi | 26713 | 2022-12-11 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 25.77 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.007 | 1.42 | 0.0 | 0.07 | 23.80 | 0.01 | 2.074 | 24.37 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.69 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 7EDX | 31075 | 2022-12-15 | 2021-03-17 | 4.5 | 4.87 | — | 4.1 | 0.008 | 1.09 | 34.0 | 0.07 | 16.62 | 0.01 | 1.497 | 21.08 | 3.31 | 6.1 | 93.4 | 0.5 | -3.70 | 0.67 | 0.35 | — | 3.7 | 0.005 | 0.77 | 0.0 | 0.04 | 15.45 | 0.00 | 1.970 | 18.29 | 0.00 | 6.2 | 93.7 | 0.1 | -0.63 | 0.97 | 0.78 | 0.59 | — | 81790 | 9837 | 46 | 154 | 10 | 0 | 0 | logfile |
✔ | 7TPP | 26060 | 2022-12-14 | 2022-01-25 | 4.1 | 4.39 | 4.20 | 7.9 | 0.002 | 0.53 | 0.0 | 0.04 | 9.16 | 0.00 | 2.240 | 10.18 | 2.87 | 21.8 | 75.4 | 2.8 | -5.30 | 0.70 | 0.35 | — | 7.8 | 0.004 | 0.90 | 0.0 | 0.05 | 12.27 | 0.01 | 2.016 | 33.40 | 0.00 | 16.5 | 83.4 | 0.2 | -3.98 | 1.53 | 0.78 | 0.63 | — | 18513 | 2309 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PLQ | 20372 | 2022-12-13 | 2019-07-01 | 3.4 | 4.30 | — | 4.3 | 0.001 | 0.46 | 0.0 | 0.04 | 7.10 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.57 | 0.36 | 0.62 | 3.9 | 0.003 | 0.94 | 0.0 | 0.05 | 14.68 | 0.00 | 2.145 | 15.13 | 0.52 | 3.9 | 96.1 | 0.0 | -1.13 | 1.75 | 0.72 | 0.76 | 1.14 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 7NJ3 | 12371 | 2022-12-16 | 2021-02-15 | 4.48 | 4.72 | — | 4.6 | 0.004 | 0.70 | 1.0 | 0.05 | 13.64 | 0.00 | 1.907 | 8.92 | 0.38 | 4.2 | 95.8 | 0.0 | -0.73 | 0.57 | 0.36 | — | 4.6 | 0.005 | 0.73 | 0.0 | 0.04 | 13.67 | 0.01 | 1.783 | 22.25 | 0.06 | 7.8 | 92.2 | 0.0 | -1.41 | 2.78 | 0.72 | 0.61 | — | 28778 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7FJo | 31625 | 2022-12-16 | 2021-08-04 | 3.34 | 3.72 | — | 3.5 | 0.012 | 1.56 | 4.0 | 0.09 | 12.63 | 0.02 | 1.277 | 9.44 | 3.26 | 7.2 | 92.4 | 0.4 | -1.06 | 0.55 | 0.36 | 0.19 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 14.43 | 0.00 | 2.138 | 10.48 | 0.29 | 4.6 | 95.4 | 0.1 | -0.11 | 1.89 | 0.76 | 0.77 | 1.87 | 28547 | 3640 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 7VQ2 | 32083 | 2022-12-15 | 2021-10-18 | 3.68 | 4.07 | — | 3.9 | 0.009 | 0.83 | 0.0 | 0.05 | 12.14 | 0.00 | 2.297 | 6.73 | 1.27 | 4.8 | 93.8 | 1.4 | -3.35 | 0.54 | 0.36 | 1.21 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 14.53 | 0.00 | 2.048 | 11.45 | 0.79 | 6.4 | 93.6 | 0.0 | 0.53 | 1.31 | 0.73 | 0.64 | 0.98 | 23340 | 1416 | 4 | 0 | 0 | 0 | 11764 | logfile |
✔ | 6QG2 | 4545 | 2022-12-20 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.72 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.115 | 17.30 | 0.00 | 10.4 | 88.9 | 0.7 | -1.95 | 1.68 | 0.70 | 0.58 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ND4 | 3622 | 2022-12-12 | 2017-03-07 | 4.4 | 5.55 | — | 5.5 | 0.010 | 1.69 | 11.0 | 0.20 | 21.69 | 0.01 | 1.678 | 26.84 | 15.57 | 14.5 | 77.1 | 8.3 | -4.90 | 0.37 | 0.37 | — | 5.4 | 0.004 | 1.10 | 0.0 | 0.05 | 15.48 | 0.01 | 1.579 | 32.86 | 0.20 | 8.1 | 91.4 | 0.5 | -1.90 | 1.91 | 0.48 | 0.71 | — | 9435 | 1175 | 6 | 1 | 6 | 0 | 0 | logfile |
✔ | 5MPD | 3534 | 2022-12-21 | 2016-12-16 | 4.1 | 4.14 | — | 4.1 | 0.035 | 3.40 | 330.0 | 0.20 | 17.76 | 0.03 | 0.656 | 3.85 | 2.78 | 5.6 | 92.3 | 2.1 | -2.14 | 0.21 | 0.37 | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 15.38 | 0.00 | 2.021 | 16.92 | 0.04 | 5.6 | 94.2 | 0.2 | -0.45 | 1.30 | 0.27 | 0.61 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E5L | 27914 | 2022-12-14 | 2022-08-22 | 4.2 | 8.91 | 5.82 | 7.6 | 0.003 | 0.64 | 0.0 | 0.04 | 11.68 | 0.00 | 1.299 | 26.62 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.63 | 0.37 | — | 7.5 | 0.004 | 0.78 | 0.0 | 0.04 | 12.09 | 0.00 | 1.079 | 28.99 | 0.00 | 3.5 | 96.5 | 0.0 | 0.34 | 1.26 | 0.89 | 0.84 | — | 20058 | 2502 | 13 | 9 | 18 | 0 | 0 | logfile |
✔ | 7XZX | 33533 | 2022-12-14 | 2022-06-03 | 4.53 | 5.42 | 4.49 | 4.5 | 0.006 | 0.99 | 0.0 | 0.06 | 25.64 | 0.00 | 1.688 | 10.77 | 0.15 | 1.7 | 98.3 | 0.0 | 0.69 | 0.69 | 0.37 | — | 4.4 | 0.004 | 0.64 | 0.0 | 0.04 | 25.55 | 0.00 | 2.100 | 14.19 | 0.00 | 2.4 | 97.6 | 0.0 | 1.14 | 1.73 | 0.90 | 0.82 | — | 19270 | 1554 | 14 | 342 | 0 | 0 | 0 | logfile |