Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6i1X	0326	2022-12-19	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54915	7290	15	0	0	0	0	logfile
✔	6HD5	0201	2022-12-12	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	11.92	0.00	2.175	17.10	0.00	5.1	94.8	0.1	-0.25	2.04	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	7FDB	31539	2022-12-13	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.65	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.86	1.0	0.05	13.79	0.01	1.984	28.58	0.01	7.4	92.5	0.0	-1.72	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	8E5P	27917	2022-12-14	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.32	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.003	0.70	0.0	0.04	11.72	0.00	1.238	20.66	0.00	3.3	96.7	0.0	0.78	1.54	0.85	0.77	—	20038	2502	13	8	18	0	0	logfile
✘	7N9Y	24264	2022-12-18	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7515	2505	2	0	0	0	0	logfile
✔	6oFJ	20047	2022-12-12	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.88	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.60	0.0	0.04	14.08	0.00	1.999	8.93	0.00	10.1	89.9	0.0	-2.15	1.20	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	5YFP	6827	2022-12-18	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.10	0.0	0.04	10.51	0.00	2.070	27.46	0.20	19.1	80.6	0.3	-2.06	3.38	0.90	0.70	—	33096	5982	8	0	0	0	0	logfile
✔	7Uo0	26636	2022-12-12	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	24.66	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.5	0.004	0.84	0.0	0.04	26.56	0.01	2.056	21.42	1.02	5.5	94.5	0.0	-2.80	4.77	0.84	0.62	1.06	10697	112	4	455	7	0	0	logfile
✔	7URi	26713	2022-12-11	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	23.80	0.01	2.074	24.37	0.00	0.0	0.0	0.0	—	1.69	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7EDX	31075	2022-12-15	2021-03-17	4.5	4.87	—	4.1	0.008	1.09	34.0	0.07	16.62	0.01	1.497	21.08	3.31	6.1	93.4	0.5	-3.70	0.67	0.35	—	3.7	0.005	0.77	0.0	0.04	15.45	0.00	1.970	18.29	0.00	6.2	93.7	0.1	-0.63	0.97	0.78	0.59	—	81790	9837	46	154	10	0	0	logfile
✔	7TPP	26060	2022-12-14	2022-01-25	4.1	4.39	4.20	7.9	0.002	0.53	0.0	0.04	9.16	0.00	2.240	10.18	2.87	21.8	75.4	2.8	-5.30	0.70	0.35	—	7.8	0.004	0.90	0.0	0.05	12.27	0.01	2.016	33.40	0.00	16.5	83.4	0.2	-3.98	1.53	0.78	0.63	—	18513	2309	5	0	0	0	0	logfile
✔	6PLQ	20372	2022-12-13	2019-07-01	3.4	4.30	—	4.3	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.003	0.94	0.0	0.05	14.68	0.00	2.145	15.13	0.52	3.9	96.1	0.0	-1.13	1.75	0.72	0.76	1.14	14240	1730	15	0	20	0	0	logfile
✔	7NJ3	12371	2022-12-16	2021-02-15	4.48	4.72	—	4.6	0.004	0.70	1.0	0.05	13.64	0.00	1.907	8.92	0.38	4.2	95.8	0.0	-0.73	0.57	0.36	—	4.6	0.005	0.73	0.0	0.04	13.67	0.01	1.783	22.25	0.06	7.8	92.2	0.0	-1.41	2.78	0.72	0.61	—	28778	1795	6	23	0	0	13868	logfile
✔	7FJo	31625	2022-12-16	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.63	0.02	1.277	9.44	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.004	0.71	0.0	0.04	14.43	0.00	2.138	10.48	0.29	4.6	95.4	0.1	-0.11	1.89	0.76	0.77	1.87	28547	3640	12	0	25	0	0	logfile
✔	7VQ2	32083	2022-12-15	2021-10-18	3.68	4.07	—	3.9	0.009	0.83	0.0	0.05	12.14	0.00	2.297	6.73	1.27	4.8	93.8	1.4	-3.35	0.54	0.36	1.21	4.1	0.003	0.63	0.0	0.04	14.53	0.00	2.048	11.45	0.79	6.4	93.6	0.0	0.53	1.31	0.73	0.64	0.98	23340	1416	4	0	0	0	11764	logfile
✔	6QG2	4545	2022-12-20	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.72	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.115	17.30	0.00	10.4	88.9	0.7	-1.95	1.68	0.70	0.58	—	38664	4961	16	0	0	0	0	logfile
✔	5ND4	3622	2022-12-12	2017-03-07	4.4	5.55	—	5.5	0.010	1.69	11.0	0.20	21.69	0.01	1.678	26.84	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.4	0.004	1.10	0.0	0.05	15.48	0.01	1.579	32.86	0.20	8.1	91.4	0.5	-1.90	1.91	0.48	0.71	—	9435	1175	6	1	6	0	0	logfile
✔	5MPD	3534	2022-12-21	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.79	0.0	0.04	15.38	0.00	2.021	16.92	0.04	5.6	94.2	0.2	-0.45	1.30	0.27	0.61	—	40974	5142	13	0	0	0	0	logfile
✔	8E5L	27914	2022-12-14	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.004	0.78	0.0	0.04	12.09	0.00	1.079	28.99	0.00	3.5	96.5	0.0	0.34	1.26	0.89	0.84	—	20058	2502	13	9	18	0	0	logfile
✔	7XZX	33533	2022-12-14	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.64	0.0	0.04	25.55	0.00	2.100	14.19	0.00	2.4	97.6	0.0	1.14	1.73	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile

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