Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KQE	22997	2023-04-25	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.25	0.00	2.025	4.55	0.77	4.4	95.6	0.0	-0.11	0.67	0.87	0.83	2.31	68370	4467	9	0	0	0	33744	logfile
✔	8E5L	27914	2023-04-25	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	7W0F	32241	2023-04-23	2021-11-18	4.55	8.43	—	7.5	0.003	0.64	1.0	0.04	14.12	0.00	1.356	21.15	1.19	4.4	94.7	0.8	-0.94	0.71	0.38	—	7.4	0.003	0.66	0.0	0.04	14.18	0.00	2.160	18.40	0.00	5.1	94.9	0.1	-0.71	1.00	0.87	0.70	—	14097	1492	6	94	0	0	0	logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7M3L	23656	2023-04-20	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.72	0.0	0.04	15.15	0.00	2.043	15.39	0.30	7.0	92.8	0.1	-0.73	3.83	0.46	0.76	1.89	6113	775	3	0	0	0	0	logfile
✔	7Pii	13437	2023-04-22	2021-08-19	2.68	2.39	—	2.7	0.010	0.78	0.0	0.05	28.29	0.00	2.229	8.23	0.31	4.0	96.0	0.0	-0.89	0.51	0.38	3.69	2.6	0.004	0.66	0.0	0.04	29.02	0.00	2.175	7.79	2.33	2.8	97.2	0.0	1.88	0.98	0.81	0.88	3.36	11192	779	12	245	0	0	0	logfile
✔	6MWQ	9277	2023-04-26	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.72	0.0	0.04	13.43	0.00	2.152	8.38	1.78	4.1	95.7	0.2	-1.12	1.34	0.78	0.87	1.94	22072	2873	8	0	0	0	0	logfile
✘	6PV6	20486	2023-04-24	2019-07-19	4.5	5.79	—	3.8	0.006	1.04	0.0	0.05	10.65	0.01	1.373	9.47	0.31	11.0	88.9	0.1	-4.72	0.60	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	7R5R	14334	2023-04-22	2022-02-11	2.44	3.05	—	2.9	0.004	0.66	0.0	0.04	27.14	0.00	2.226	6.02	0.31	2.5	97.5	0.0	-0.10	0.59	0.39	3.60	2.8	0.014	0.90	0.0	0.04	28.54	0.01	2.131	5.12	1.71	3.6	96.4	0.0	1.78	0.94	0.81	0.87	3.25	11625	779	12	266	0	0	0	logfile
✔	3JAC	6343	2023-04-23	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	5A63	3061	2023-04-21	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	19.07	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.003	0.76	0.0	0.04	17.76	0.00	2.217	12.14	1.05	5.5	94.1	0.3	0.06	3.24	0.62	0.82	1.80	10003	1223	13	0	22	0	0	logfile
✔	7K8D	22728	2023-04-21	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7RZY	24783	2023-04-24	2021-08-28	3.5	2.57	3.55	4.0	0.014	1.83	0.0	0.08	14.40	0.00	2.491	1.92	0.80	10.2	88.4	1.4	-2.89	0.55	0.40	0.25	3.5	0.004	0.85	0.0	0.04	17.34	0.01	2.066	15.14	0.58	8.2	91.3	0.6	-1.30	1.41	0.72	0.67	1.20	17458	2177	13	0	7	0	0	logfile
✔	6G90	4364	2023-04-23	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.73	0.03	1.687	19.01	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.003	0.90	0.0	0.04	15.20	0.01	2.102	17.69	0.21	7.5	92.2	0.3	-0.80	3.85	0.58	0.57	—	65050	6796	43	474	223	0	0	logfile
✔	7NKi	12440	2023-04-28	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	13.49	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.003	0.69	0.0	0.04	14.03	0.00	1.901	21.72	0.00	6.5	93.5	0.0	-1.27	2.38	0.80	0.65	—	28775	1794	6	23	0	0	13868	logfile
✔	5X59	6704	2023-04-28	2017-02-15	3.7	3.77	—	3.7	0.011	1.66	0.0	0.08	14.57	0.01	1.477	23.24	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.005	1.02	0.0	0.05	15.80	0.01	1.921	22.27	0.65	13.4	86.4	0.2	-2.42	1.59	0.60	0.65	1.20	26838	3423	6	0	30	0	0	logfile
✔	7MLV	23911	2023-04-23	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	10.90	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.014	1.03	0.0	0.05	12.11	0.01	2.077	29.77	0.00	11.6	88.4	0.0	-3.33	1.72	0.70	0.70	—	15055	1919	16	0	22	0	0	logfile
✔	7oCK	12809	2023-04-28	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.005	0.92	0.0	0.05	16.96	0.01	2.008	39.34	0.37	7.5	92.4	0.1	-1.36	1.42	0.87	0.65	0.03	28276	3666	12	0	0	0	0	logfile
✔	6HDD	0204	2023-04-28	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	7WD9	32435	2023-04-26	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.64	0.0	0.04	13.62	0.00	1.877	11.74	0.23	5.5	94.4	0.1	-0.85	1.33	0.75	0.68	1.07	69720	4533	9	0	0	0	34404	logfile

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