Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N1U	24123	2022-12-15	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.76	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	2.1	0.005	0.76	0.0	0.05	15.77	0.00	2.094	12.43	0.71	4.6	95.4	0.0	-0.16	0.65	0.84	0.83	2.43	26619	3225	39	0	99	0	0	logfile
✔	7N8o	24239	2022-12-11	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.13	20.20	0.01	1.522	14.96	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.76	0.0	0.05	18.62	0.01	2.011	12.03	1.57	2.8	97.2	0.0	1.10	0.35	0.75	0.77	5.40	54656	5544	113	0	228	1236	0	logfile
✔	7RCV	24407	2022-12-11	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.13	20.29	0.01	1.915	14.12	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.006	0.91	0.0	0.05	19.05	0.01	2.010	12.97	2.06	2.8	97.1	0.0	0.50	0.91	0.81	0.84	5.43	54656	5544	114	0	228	1236	0	logfile
✔	7SQG	25384	2022-12-11	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.58	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.005	0.64	0.0	0.05	18.67	0.00	2.092	8.16	1.16	4.0	96.0	0.0	1.64	0.97	0.81	0.83	3.46	6630	810	6	0	12	0	0	logfile
✔	7WP9	32679	2022-12-15	2022-01-23	2.56	2.20	—	1.9	0.003	0.76	1.0	0.05	14.22	0.01	2.294	4.09	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.64	0.0	0.05	16.37	0.00	2.077	9.39	2.14	5.4	94.6	0.0	-1.50	1.00	0.76	0.81	2.46	25077	3141	13	0	28	0	0	logfile
✔	7UWL	26835	2022-12-12	2022-05-03	3.7	2.40	3.59	1.9	0.004	0.75	1.0	0.05	16.20	0.00	2.137	15.86	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.004	0.81	0.0	0.05	16.95	0.01	2.075	17.58	0.81	9.0	91.0	0.0	-1.77	0.45	0.69	0.65	1.78	10100	1236	16	0	22	0	0	logfile
✔	7SRQ	25401	2022-12-11	2021-11-08	2.7	2.17	—	1.9	0.008	0.79	0.0	0.05	13.50	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	1.9	0.003	0.67	0.0	0.04	15.52	0.00	2.308	8.16	3.50	2.8	97.2	0.0	0.87	1.00	0.72	0.77	3.50	1960	254	1	0	2	0	0	logfile
✔	7M3N	23658	2022-12-11	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.003	0.58	0.0	0.04	16.91	0.00	2.261	6.89	2.29	3.6	96.4	0.0	-0.41	0.46	0.45	0.84	4.72	6004	759	3	0	0	0	0	logfile
✔	7UM7	26599	2022-12-11	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.003	0.56	0.0	0.04	14.97	0.00	2.239	3.70	1.20	4.0	96.0	0.0	0.72	0.32	0.83	0.82	3.83	8165	1089	6	0	1	0	0	logfile
✔	7UM6	26598	2022-12-11	2022-04-06	2.79	2.13	2.81	1.9	0.021	0.64	0.0	0.04	11.12	0.00	2.359	2.51	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	1.9	0.003	0.64	0.0	0.04	13.68	0.00	2.268	4.26	1.45	3.3	96.7	0.0	0.24	0.29	0.83	0.83	4.05	8175	1094	6	0	1	0	0	logfile
✔	7P6A	13223	2022-12-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7NJ1	12369	2022-12-12	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.56	0.00	2.141	11.50	2.54	6.2	93.7	0.1	0.67	0.57	0.76	0.76	1.80	11096	1501	2	0	0	0	0	logfile
✔	7UWM	26836	2022-12-11	2022-05-03	2.5	2.14	2.51	1.9	0.003	0.57	0.0	0.04	18.13	0.00	2.107	6.93	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.002	0.53	0.0	0.04	18.42	0.00	2.115	7.00	4.39	2.6	97.4	0.0	-0.32	0.23	0.80	0.79	2.06	7972	967	9	0	9	0	0	logfile
✘	7D1T	30547	2022-12-19	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	7TQY	26075	2022-12-12	2022-01-27	2.6	2.10	2.62	1.9	0.005	0.85	0.0	0.05	16.19	0.01	1.947	3.28	1.12	3.3	96.7	0.0	0.37	0.62	0.83	3.67	1.9	0.004	0.61	0.0	0.04	16.74	0.00	1.922	6.76	2.33	3.7	96.3	0.0	0.82	0.41	0.61	0.83	3.74	9890	1235	6	1	6	0	0	logfile
✔	7UM5	26597	2022-12-12	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.56	0.0	0.04	11.81	0.00	2.281	2.35	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.32	0.00	2.253	4.15	0.83	4.1	95.9	0.0	0.32	0.35	0.83	0.83	3.96	8277	1104	6	0	1	1	0	logfile
✔	6WWR	21945	2022-12-12	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.49	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.005	0.69	0.0	0.05	16.98	0.00	1.893	7.17	2.01	4.3	95.7	0.0	-0.46	1.08	0.62	0.84	3.96	9719	1220	6	1	4	0	0	logfile
✔	6WWo	21942	2022-12-12	2020-05-09	2.8	2.07	2.79	1.9	0.011	1.28	3.0	0.06	15.86	0.02	1.958	6.13	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	2.0	0.003	0.66	0.0	0.04	17.68	0.00	1.992	9.19	2.94	3.3	96.6	0.1	-0.18	2.14	0.59	0.80	3.83	9784	1230	6	1	5	0	0	logfile
✔	7LD0	23278	2022-12-19	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	9.07	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	2.0	0.005	0.80	0.0	0.05	16.93	0.00	2.009	11.57	0.66	4.9	95.1	0.0	-0.71	0.59	0.77	0.77	0.93	36976	4720	8	0	0	0	0	logfile
✔	6WWU	21948	2022-12-12	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.003	0.63	0.0	0.04	17.74	0.00	1.999	7.14	1.92	3.2	96.7	0.1	-0.34	0.69	0.61	0.83	3.91	9688	1216	6	1	4	0	0	logfile

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