Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SRR	25402	2023-04-21	2021-11-08	2.9	2.20	—	2.0	0.005	0.67	0.0	0.05	12.52	0.00	2.196	3.95	0.12	3.4	96.6	0.0	0.15	0.80	0.78	3.23	2.0	0.003	0.56	0.0	0.04	15.03	0.00	2.189	4.32	1.41	3.2	96.8	0.0	0.79	0.32	0.82	0.82	2.78	8394	1119	5	0	1	0	0	logfile
✔	7N1W	24125	2023-04-27	2021-05-28	3.33	2.63	—	2.0	0.014	1.79	17.0	0.12	13.61	0.01	1.951	6.11	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	2.0	0.003	0.73	0.0	0.05	15.68	0.00	2.102	11.00	0.32	4.4	95.6	0.0	-0.08	1.57	0.84	0.81	2.31	26810	3257	35	0	95	0	0	logfile
✔	7RQS	24635	2023-04-20	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.64	0.0	0.04	15.66	0.00	1.984	11.67	0.26	8.9	91.0	0.1	-1.05	0.58	0.71	0.69	2.23	7792	1074	1	0	1	0	0	logfile
✔	7N1V	24124	2023-04-28	2021-05-28	3.21	2.67	—	2.0	0.014	1.77	10.0	0.13	13.52	0.01	1.776	4.31	0.98	6.5	93.2	0.3	-1.63	0.82	0.80	3.43	2.1	0.004	0.76	0.0	0.05	15.84	0.00	2.094	10.00	0.73	5.0	95.0	0.0	-0.29	1.33	0.84	0.83	2.83	26947	3274	35	0	95	0	0	logfile
✔	8CZi	27098	2023-04-19	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	8DRE	27676	2023-04-27	2022-07-20	3.18	2.53	3.25	2.0	0.006	0.80	0.0	0.05	18.17	0.01	2.216	8.37	0.25	3.5	96.5	0.0	-0.71	0.73	0.76	1.15	2.0	0.003	0.54	0.0	0.04	16.68	0.00	2.182	11.13	0.28	3.1	96.9	0.0	0.25	0.43	0.73	0.78	1.33	25940	3069	18	0	20	6	0	logfile
✔	8DWC	27752	2023-04-20	2022-08-01	2.87	2.13	2.85	2.0	0.008	0.65	0.0	0.05	12.54	0.00	2.095	7.28	0.00	4.8	95.2	0.0	-1.14	0.76	0.81	4.35	2.0	0.003	0.56	0.0	0.04	15.16	0.00	2.147	5.43	0.59	3.7	96.3	0.0	1.33	0.36	0.77	0.83	3.20	8298	1102	6	0	0	0	0	logfile
✔	7WY0	32883	2023-04-21	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	7N5F	24188	2023-04-19	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	7WoG	32651	2023-04-20	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	7NA7	24267	2023-04-21	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	12.93	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.79	0.0	0.07	15.85	0.00	2.129	9.26	2.34	2.5	97.5	0.0	0.49	0.54	0.81	0.82	3.65	9036	1142	7	0	2	0	0	logfile
✔	7WZ7	32905	2023-04-20	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.004	0.68	0.0	0.04	14.95	0.00	2.140	12.43	2.31	4.3	95.7	0.0	0.40	1.18	0.72	0.73	1.49	8676	1108	5	0	0	0	0	logfile
✔	8DPF	27633	2023-04-20	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	10.32	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.004	0.65	0.0	0.04	14.15	0.00	2.155	4.34	1.46	3.2	96.8	0.0	0.70	1.02	0.80	0.80	3.07	8160	1093	6	0	2	0	0	logfile
✔	8E96	27957	2023-04-26	2022-08-26	3.38	2.51	—	2.0	0.003	0.55	0.0	0.04	14.29	0.00	2.149	8.15	0.00	6.5	93.4	0.1	-1.58	0.78	0.75	2.05	2.0	0.005	0.65	0.0	0.05	15.67	0.00	2.120	9.17	0.22	7.3	92.5	0.1	-1.28	0.92	0.79	0.77	1.58	21924	2838	8	0	6	0	0	logfile
✔	7KBB	22788	2023-04-20	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.003	0.72	0.0	0.04	14.59	0.01	2.110	14.66	0.00	6.7	93.3	0.0	-0.71	0.66	0.58	0.60	—	6422	812	7	0	0	0	0	logfile
✔	8EAX	27989	2023-04-24	2022-08-29	3.73	2.60	3.72	2.0	0.004	0.83	0.0	0.05	14.96	0.00	2.213	11.91	0.30	9.8	89.8	0.4	-3.99	0.73	0.74	1.75	2.0	0.004	0.86	0.0	0.04	17.66	0.00	2.018	11.34	0.50	5.6	94.4	0.0	-0.32	1.34	0.73	0.73	1.30	18458	2332	8	0	0	0	0	logfile
✔	7TJQ	25929	2023-04-29	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.007	0.72	0.0	0.05	15.36	0.00	2.157	9.61	0.40	3.3	96.7	0.0	-0.33	0.94	0.75	0.79	3.15	20538	2679	21	0	12	0	0	logfile
✘	8B14	15802	2023-04-24	2022-09-09	2.6	2.13	2.61	2.0	0.007	0.68	0.0	0.05	16.80	0.01	2.163	5.79	0.79	2.8	97.2	0.0	0.27	0.80	0.81	5.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18810	1243	3	0	2	0	9112	logfile
✔	8DPH	27635	2023-04-20	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.62	0.0	0.04	14.05	0.00	2.202	5.07	0.24	2.8	97.2	0.0	1.06	1.06	0.78	0.77	2.24	8182	1093	6	0	3	0	0	logfile
✔	7UWJ	26833	2023-04-20	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.05	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.69	0.0	0.04	15.07	0.00	2.209	10.86	1.00	5.8	94.2	0.0	-2.11	0.45	0.68	0.65	1.84	5314	664	6	0	6	0	0	logfile

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