Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DZP	27804	2023-11-14	2022-08-08	2.71	2.09	2.70	1.9	0.019	0.72	0.0	0.10	13.90	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.8	0.005	0.67	0.0	0.05	15.74	0.00	2.112	8.53	1.39	4.6	95.4	0.0	0.40	0.33	0.80	0.82	3.75	8657	1120	6	0	1	0	0	logfile
✔	7EFD	31084	2023-11-13	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.47	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.74	0.0	0.05	14.91	0.00	1.834	7.38	0.00	3.4	96.0	0.6	0.90	0.55	0.80	0.84	6.49	4004	480	4	0	4	156	0	logfile
✔	8AG5	15416	2023-11-16	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.002	0.51	0.0	0.04	17.77	0.00	2.178	6.94	0.45	3.7	96.3	0.0	0.53	0.87	0.76	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	8F8S	28935	2023-11-17	2022-11-22	2.84	2.18	2.89	1.9	0.004	0.61	0.0	0.05	14.04	0.00	2.002	4.56	2.94	3.2	96.8	0.0	-0.35	0.80	0.84	3.68	1.9	0.003	0.66	0.0	0.05	17.12	0.00	1.972	7.88	1.88	3.5	96.5	0.0	0.36	0.36	0.79	0.84	3.18	20371	2579	14	0	14	0	0	logfile
✔	8P5U	17453	2023-11-13	2023-05-24	2.17	2.20	2.21	1.9	0.032	1.60	0.0	0.08	15.06	0.01	1.601	3.66	0.31	3.0	97.0	0.0	-1.97	0.91	0.92	5.23	1.9	0.004	0.58	0.0	0.04	17.05	0.00	1.953	4.75	0.78	2.4	97.6	0.0	0.91	0.40	0.89	0.89	4.37	52878	6714	12	0	24	0	0	logfile
✔	8P5X	17456	2023-11-14	2023-05-24	2.29	2.20	2.36	1.9	0.013	1.76	0.0	0.09	14.15	0.00	2.250	0.66	0.21	3.1	96.9	0.0	-1.93	0.89	0.90	4.98	2.0	0.003	0.54	0.0	0.04	16.33	0.00	2.003	2.59	0.51	2.1	97.9	0.0	0.77	0.42	0.87	0.88	4.28	55346	7110	18	0	12	0	0	logfile
✘	7U9Z	26410	2023-11-20	2022-03-11	3.29	3.51	—	1.9	0.003	0.76	4.0	0.04	15.16	0.01	1.938	11.72	1.19	4.6	95.3	0.1	0.57	0.86	0.79	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138688	17332	12	0	20	0	0	logfile
✔	8E9Z	27969	2023-11-14	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.003	0.57	0.0	0.04	16.07	0.00	1.969	7.33	1.49	3.2	96.8	0.0	0.95	0.35	0.79	0.80	3.01	8566	1129	6	0	2	0	0	logfile
✔	8EA0	27970	2023-11-13	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.56	0.0	0.04	15.18	0.00	2.051	8.02	0.84	5.3	94.7	0.0	1.64	0.46	0.74	0.80	3.17	2286	285	1	0	2	0	0	logfile
✔	8P6V	17508	2023-11-13	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.21	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.003	0.57	0.0	0.04	16.68	0.00	2.124	5.67	2.17	1.6	98.2	0.2	1.30	0.75	0.64	0.78	5.35	5243	630	7	0	2	138	0	logfile
✔	7SRQ	25401	2023-11-13	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	13.54	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	2.7	0.004	0.76	0.0	0.04	15.44	0.00	2.264	8.93	3.50	3.2	96.8	0.0	0.20	0.48	0.72	0.77	3.78	1960	254	1	0	2	0	0	logfile
✔	7T9i	25758	2023-11-18	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.76	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.67	0.0	0.04	15.11	0.00	1.904	9.43	2.50	6.3	93.7	0.0	-0.52	1.14	0.74	0.72	2.51	23529	1532	11	0	8	0	11557	logfile
✔	8FN1	29303	2023-11-14	2022-12-26	2.88	2.15	2.86	1.9	0.004	0.59	0.0	0.06	9.15	0.00	2.173	7.25	0.23	2.5	97.5	0.0	1.17	0.78	0.79	4.36	1.9	0.003	0.55	0.0	0.04	13.02	0.00	2.229	6.89	2.04	3.0	97.0	0.0	1.47	0.47	0.78	0.80	3.87	8444	1116	6	0	0	0	0	logfile
✔	7P6A	13223	2023-11-13	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✔	8HKM	34855	2023-11-20	2022-11-27	2.95	2.42	3.07	1.9	0.003	0.71	3.0	0.05	15.55	0.01	1.484	10.49	1.30	2.6	97.3	0.1	-0.56	0.80	0.84	3.13	1.8	0.004	0.64	0.0	0.04	16.35	0.00	2.164	9.81	2.34	2.9	97.0	0.1	0.53	1.16	0.79	0.83	2.93	28855	3596	8	0	19	0	0	logfile
✔	7UA1	26412	2023-11-20	2022-03-11	2.99	3.02	—	1.9	0.003	0.62	0.0	0.04	14.11	0.00	1.785	8.77	0.29	3.3	96.6	0.1	1.20	0.85	0.80	2.97	1.9	0.003	0.67	0.0	0.04	15.27	0.00	2.125	9.07	0.44	4.0	96.0	0.1	1.12	0.44	0.87	0.84	3.34	138680	17324	12	0	16	0	0	logfile
✔	8BK9	16093	2023-11-21	2022-11-08	2.1	1.91	2.07	1.9	0.003	0.61	0.0	0.04	17.00	0.00	2.222	1.87	0.49	1.2	98.8	0.0	4.72	0.69	0.87	6.31	1.9	0.005	0.68	0.0	0.04	17.12	0.00	2.246	2.77	0.38	1.8	98.2	0.0	4.48	0.18	0.69	0.88	6.63	34978	4128	54	0	6	1156	0	logfile
✔	8Q9F	18279	2023-11-13	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.64	0.0	0.05	15.99	0.00	2.249	3.13	0.00	2.5	97.5	0.0	-2.11	1.84	0.44	0.86	7.01	6390	414	6	0	0	0	3258	logfile
✔	8oRM	17129	2023-11-13	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.77	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.005	0.69	0.0	0.05	16.78	0.01	2.187	6.14	1.08	1.5	98.4	0.2	1.36	0.18	0.70	0.83	5.92	5341	632	7	0	2	210	0	logfile
✔	7WP9	32679	2023-11-19	2022-01-23	2.56	2.20	—	1.9	0.004	0.78	1.0	0.05	14.32	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.66	0.0	0.05	16.46	0.00	2.108	9.33	2.25	5.2	94.8	0.0	-1.50	1.01	0.76	0.81	2.44	25077	3141	13	0	28	0	0	logfile

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