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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NPY | 0476 | 2022-12-11 | 2019-01-18 | 3.8 | 4.03 | — | 3.8 | 0.006 | 1.16 | 0.0 | 0.06 | 16.44 | 0.01 | 2.244 | 8.65 | 0.84 | 14.6 | 85.3 | 0.1 | -4.90 | 0.79 | 0.71 | 0.51 | 3.8 | 0.003 | 0.92 | 0.0 | 0.05 | 17.16 | 0.00 | 2.200 | 18.23 | 0.48 | 10.6 | 89.4 | 0.0 | -2.22 | 1.11 | 0.78 | 0.70 | 0.59 | 7586 | 965 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6DDF | 7869 | 2022-12-11 | 2018-05-10 | 3.5 | 4.16 | 3.83 | 4.1 | 0.006 | 1.01 | 1.0 | 0.06 | 10.48 | 0.01 | 2.228 | 7.92 | 0.72 | 8.3 | 91.5 | 0.1 | -4.62 | 0.72 | 0.72 | 2.22 | 4.1 | 0.003 | 0.76 | 1.0 | 0.05 | 15.75 | 0.00 | 2.160 | 14.57 | 0.43 | 5.0 | 95.0 | 0.0 | -1.56 | 1.32 | 0.66 | 0.72 | 1.26 | 6808 | 890 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2022-12-11 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.96 | 0.00 | 2.167 | 15.68 | 0.24 | 10.2 | 89.3 | 0.4 | -2.62 | 3.61 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZEU | 6923 | 2022-12-11 | 2018-02-28 | 3.7 | 3.76 | — | 3.7 | 0.007 | 1.11 | 0.0 | 0.05 | 16.39 | 0.01 | 1.086 | 17.30 | 1.40 | 8.6 | 90.3 | 1.1 | -4.22 | 0.59 | 0.75 | 1.73 | 3.7 | 0.005 | 0.72 | 0.0 | 0.04 | 16.22 | 0.01 | 2.039 | 14.74 | 1.10 | 9.9 | 89.9 | 0.3 | -1.18 | 1.36 | 0.61 | 0.79 | 1.67 | 52954 | 2406 | 22 | 1583 | 0 | 0 | 0 | logfile |
✔ | 6U1N | 20612 | 2022-12-11 | 2019-08-16 | 4.0 | 4.36 | — | 4.0 | 0.008 | 0.81 | 0.0 | 0.04 | 12.09 | 0.00 | 2.198 | 18.36 | 0.00 | 7.8 | 92.2 | 0.0 | -4.67 | 0.84 | 0.82 | — | 4.0 | 0.005 | 0.75 | 0.0 | 0.04 | 13.12 | 0.00 | 2.160 | 15.68 | 0.65 | 6.2 | 93.8 | 0.0 | -0.75 | 0.52 | 0.84 | 0.82 | — | 5863 | 864 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6KZo | 0791 | 2022-12-11 | 2019-09-25 | 3.3 | 3.57 | — | 3.5 | 0.014 | 1.41 | 3.0 | 0.10 | 15.51 | 0.01 | 2.196 | 36.78 | 9.01 | 3.3 | 96.0 | 0.7 | -1.32 | 0.60 | 0.82 | 2.55 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 16.45 | 0.00 | 2.125 | 7.01 | 0.82 | 3.4 | 96.5 | 0.1 | 0.57 | 1.34 | 0.59 | 0.84 | 2.15 | 8238 | 967 | 1 | 0 | 22 | 0 | 0 | logfile |
✔ | 6NT7 | 0504 | 2022-12-11 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.008 | 0.91 | 0.0 | 0.05 | 14.13 | 0.01 | 2.238 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | 4.1 | 0.006 | 0.75 | 0.0 | 0.04 | 15.86 | 0.00 | 2.209 | 10.97 | 0.78 | 4.6 | 95.4 | 0.0 | 0.58 | 1.19 | 0.76 | 0.85 | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PoS | 20418 | 2022-12-11 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.58 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.04 | 13.04 | 0.00 | 1.941 | 10.10 | 0.07 | 3.5 | 96.5 | 0.0 | -0.16 | 1.03 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 5H1B | 9566 | 2022-12-11 | 2016-10-08 | 4.4 | 3.94 | — | 3.6 | 0.010 | 1.41 | 0.0 | 0.06 | 13.44 | 0.01 | 1.503 | 54.45 | 5.67 | 6.2 | 91.1 | 2.6 | -1.51 | 0.59 | 0.70 | — | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 13.60 | 0.00 | 2.011 | 14.89 | 0.00 | 3.5 | 95.6 | 0.9 | 0.70 | 2.70 | 0.64 | 0.82 | — | 7359 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 6QJH | 4563 | 2022-12-11 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.61 | 0.0 | 0.05 | 15.77 | 0.00 | 2.278 | 5.61 | 0.00 | 2.3 | 97.7 | 0.0 | -2.55 | 1.57 | 0.30 | 0.78 | 2.85 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U2K | 20621 | 2022-12-11 | 2019-08-20 | 2.93 | 3.31 | 3.29 | 3.3 | 0.010 | 0.98 | 0.0 | 0.06 | 10.03 | 0.01 | 2.354 | 3.34 | 0.19 | 9.7 | 90.3 | 0.0 | -4.70 | 0.70 | 0.83 | 4.65 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 15.05 | 0.00 | 2.275 | 6.57 | 2.12 | 8.2 | 91.8 | 0.0 | -2.00 | 1.20 | 0.65 | 0.81 | 2.97 | 4719 | 604 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2022-12-11 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.61 | 0.0 | 0.07 | 15.67 | 0.02 | 1.977 | 4.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.96 | 0.0 | 0.05 | 22.24 | 0.01 | 1.829 | 50.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.66 | 0.81 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 6oEU | 7795 | 2022-12-11 | 2019-03-27 | 3.5 | 3.62 | — | 3.9 | 0.014 | 1.89 | 3.0 | 0.11 | 15.00 | 0.00 | 2.157 | 5.92 | 0.85 | 10.3 | 89.6 | 0.1 | -3.81 | 0.41 | 0.65 | 1.69 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 16.49 | 0.00 | 2.201 | 11.77 | 0.28 | 7.8 | 92.2 | 0.0 | -0.28 | 1.53 | 0.47 | 0.69 | 0.92 | 7310 | 964 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 5LMQ | 4076 | 2022-12-11 | 2016-08-01 | 4.2 | 4.46 | 4.25 | 4.2 | 0.009 | 1.44 | 30.0 | 0.12 | 20.82 | 0.01 | 1.387 | 19.45 | 21.46 | 10.5 | 86.1 | 3.4 | -2.56 | 0.80 | 0.76 | — | 4.2 | 0.004 | 0.74 | 0.0 | 0.04 | 16.56 | 0.01 | 1.838 | 29.09 | 0.00 | 8.5 | 91.0 | 0.5 | -1.19 | 1.62 | 0.84 | 0.85 | — | 55841 | 2635 | 29 | 1612 | 66 | 0 | 0 | logfile |
✔ | 6Mi7 | 9125 | 2022-12-11 | 2018-09-19 | 4.2 | 4.24 | — | 4.2 | 0.006 | 1.19 | 0.0 | 0.06 | 12.42 | 0.01 | 2.053 | 7.37 | 0.38 | 9.3 | 90.7 | 0.0 | -5.97 | 0.58 | 0.80 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 13.76 | 0.00 | 2.290 | 9.72 | 0.00 | 5.9 | 94.1 | 0.0 | -2.32 | 1.53 | 0.59 | 0.80 | — | 7285 | 931 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6oSL | 20185 | 2022-12-11 | 2019-05-01 | 3.0 | 3.04 | — | 3.0 | 0.010 | 1.06 | 0.0 | 0.07 | 13.47 | 0.00 | 2.308 | 12.61 | 2.44 | 12.3 | 87.7 | 0.0 | -4.40 | 0.45 | 0.79 | 1.34 | 3.0 | 0.005 | 0.80 | 0.0 | 0.06 | 16.12 | 0.00 | 2.266 | 12.12 | 8.54 | 10.9 | 89.1 | 0.0 | -3.41 | 1.25 | 0.45 | 0.80 | 2.18 | 4060 | 590 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJQ | 4566 | 2022-12-11 | 2019-01-24 | 3.7 | 3.99 | 2.14 | 4.1 | 0.021 | 1.17 | 0.0 | 0.11 | 13.36 | 0.01 | 2.499 | 5.58 | 0.00 | 4.0 | 94.0 | 2.0 | -4.41 | 0.39 | 0.75 | 2.60 | 4.1 | 0.004 | 0.79 | 0.0 | 0.05 | 14.26 | 0.00 | 2.261 | 10.37 | 0.00 | 6.0 | 94.0 | 0.0 | -2.92 | 1.26 | 0.38 | 0.75 | 1.88 | 1218 | 162 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2022-12-11 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.79 | 0.0 | 0.06 | 12.89 | 0.00 | 2.161 | 16.36 | 0.65 | 15.9 | 84.1 | 0.0 | -3.37 | 1.79 | 0.42 | 0.73 | 2.58 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iRT | 9722 | 2022-12-11 | 2018-11-14 | 3.5 | 3.76 | — | 3.7 | 0.011 | 1.22 | 0.0 | 0.09 | 12.34 | 0.01 | 2.241 | 10.46 | 3.01 | 9.2 | 90.0 | 0.8 | -5.53 | 0.63 | 0.80 | 3.32 | 3.7 | 0.003 | 0.79 | 0.0 | 0.05 | 14.55 | 0.00 | 2.174 | 11.47 | 0.26 | 7.0 | 92.4 | 0.5 | -1.03 | 0.90 | 0.64 | 0.81 | 2.45 | 7348 | 926 | 7 | 0 | 11 | 0 | 0 | logfile |
✔ | 6UKJ | 20806 | 2022-12-11 | 2019-10-05 | 3.3 | 3.53 | 3.32 | 3.4 | 0.007 | 0.91 | 0.0 | 0.05 | 13.71 | 0.01 | 2.114 | 6.29 | 0.79 | 4.5 | 95.1 | 0.3 | -3.21 | 0.62 | 0.81 | 3.08 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.04 | 0.00 | 2.145 | 11.17 | 0.20 | 3.8 | 96.2 | 0.0 | 0.14 | 1.54 | 0.64 | 0.83 | 2.29 | 4625 | 582 | 4 | 0 | 1 | 0 | 0 | logfile |