Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NPY	0476	2022-12-11	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.65	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.92	0.0	0.05	17.16	0.00	2.200	18.23	0.48	10.6	89.4	0.0	-2.22	1.11	0.78	0.70	0.59	7586	965	3	0	1	0	0	logfile
✔	6DDF	7869	2022-12-11	2018-05-10	3.5	4.16	3.83	4.1	0.006	1.01	1.0	0.06	10.48	0.01	2.228	7.92	0.72	8.3	91.5	0.1	-4.62	0.72	0.72	2.22	4.1	0.003	0.76	1.0	0.05	15.75	0.00	2.160	14.57	0.43	5.0	95.0	0.0	-1.56	1.32	0.66	0.72	1.26	6808	890	5	0	2	0	0	logfile
✔	5LY6	4118	2022-12-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5ZEU	6923	2022-12-11	2018-02-28	3.7	3.76	—	3.7	0.007	1.11	0.0	0.05	16.39	0.01	1.086	17.30	1.40	8.6	90.3	1.1	-4.22	0.59	0.75	1.73	3.7	0.005	0.72	0.0	0.04	16.22	0.01	2.039	14.74	1.10	9.9	89.9	0.3	-1.18	1.36	0.61	0.79	1.67	52954	2406	22	1583	0	0	0	logfile
✔	6U1N	20612	2022-12-11	2019-08-16	4.0	4.36	—	4.0	0.008	0.81	0.0	0.04	12.09	0.00	2.198	18.36	0.00	7.8	92.2	0.0	-4.67	0.84	0.82	—	4.0	0.005	0.75	0.0	0.04	13.12	0.00	2.160	15.68	0.65	6.2	93.8	0.0	-0.75	0.52	0.84	0.82	—	5863	864	5	0	1	0	0	logfile
✔	6KZo	0791	2022-12-11	2019-09-25	3.3	3.57	—	3.5	0.014	1.41	3.0	0.10	15.51	0.01	2.196	36.78	9.01	3.3	96.0	0.7	-1.32	0.60	0.82	2.55	3.5	0.003	0.69	0.0	0.04	16.45	0.00	2.125	7.01	0.82	3.4	96.5	0.1	0.57	1.34	0.59	0.84	2.15	8238	967	1	0	22	0	0	logfile
✔	6NT7	0504	2022-12-11	2019-01-28	4.0	4.27	—	4.1	0.008	0.91	0.0	0.05	14.13	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.006	0.75	0.0	0.04	15.86	0.00	2.209	10.97	0.78	4.6	95.4	0.0	0.58	1.19	0.76	0.85	—	4729	588	3	0	1	0	0	logfile
✔	6PoS	20418	2022-12-11	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.003	0.56	0.0	0.04	13.04	0.00	1.941	10.10	0.07	3.5	96.5	0.0	-0.16	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	5H1B	9566	2022-12-11	2016-10-08	4.4	3.94	—	3.6	0.010	1.41	0.0	0.06	13.44	0.01	1.503	54.45	5.67	6.2	91.1	2.6	-1.51	0.59	0.70	—	3.6	0.003	0.69	0.0	0.04	13.60	0.00	2.011	14.89	0.00	3.5	95.6	0.9	0.70	2.70	0.64	0.82	—	7359	924	7	9	6	0	0	logfile
✔	6QJH	4563	2022-12-11	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.30	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6U2K	20621	2022-12-11	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.70	0.0	0.04	15.05	0.00	2.275	6.57	2.12	8.2	91.8	0.0	-2.00	1.20	0.65	0.81	2.97	4719	604	3	0	4	0	0	logfile
✔	6UET	20756	2022-12-11	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.96	0.0	0.05	22.24	0.01	1.829	50.36	0.00	0.0	0.0	0.0	—	0.76	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	6oEU	7795	2022-12-11	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.003	0.69	0.0	0.04	16.49	0.00	2.201	11.77	0.28	7.8	92.2	0.0	-0.28	1.53	0.47	0.69	0.92	7310	964	5	0	8	0	0	logfile
✔	5LMQ	4076	2022-12-11	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.82	0.01	1.387	19.45	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.004	0.74	0.0	0.04	16.56	0.01	1.838	29.09	0.00	8.5	91.0	0.5	-1.19	1.62	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	6Mi7	9125	2022-12-11	2018-09-19	4.2	4.24	—	4.2	0.006	1.19	0.0	0.06	12.42	0.01	2.053	7.37	0.38	9.3	90.7	0.0	-5.97	0.58	0.80	—	4.2	0.003	0.76	0.0	0.04	13.76	0.00	2.290	9.72	0.00	5.9	94.1	0.0	-2.32	1.53	0.59	0.80	—	7285	931	6	0	1	0	0	logfile
✔	6oSL	20185	2022-12-11	2019-05-01	3.0	3.04	—	3.0	0.010	1.06	0.0	0.07	13.47	0.00	2.308	12.61	2.44	12.3	87.7	0.0	-4.40	0.45	0.79	1.34	3.0	0.005	0.80	0.0	0.06	16.12	0.00	2.266	12.12	8.54	10.9	89.1	0.0	-3.41	1.25	0.45	0.80	2.18	4060	590	10	0	0	0	0	logfile
✔	6QJQ	4566	2022-12-11	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.79	0.0	0.05	14.26	0.00	2.261	10.37	0.00	6.0	94.0	0.0	-2.92	1.26	0.38	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	6CU8	7619	2022-12-11	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6iRT	9722	2022-12-11	2018-11-14	3.5	3.76	—	3.7	0.011	1.22	0.0	0.09	12.34	0.01	2.241	10.46	3.01	9.2	90.0	0.8	-5.53	0.63	0.80	3.32	3.7	0.003	0.79	0.0	0.05	14.55	0.00	2.174	11.47	0.26	7.0	92.4	0.5	-1.03	0.90	0.64	0.81	2.45	7348	926	7	0	11	0	0	logfile
✔	6UKJ	20806	2022-12-11	2019-10-05	3.3	3.53	3.32	3.4	0.007	0.91	0.0	0.05	13.71	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.64	0.0	0.04	16.04	0.00	2.145	11.17	0.20	3.8	96.2	0.0	0.14	1.54	0.64	0.83	2.29	4625	582	4	0	1	0	0	logfile

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