Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EET	28057	2023-04-19	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.28	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.037	2.69	0.0	0.32	14.46	0.00	0.378	13.19	0.11	1.1	98.9	0.0	2.07	1.31	0.68	0.83	2.96	107640	13260	60	0	120	0	0	logfile
✔	7TAS	25783	2023-04-19	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.50	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.69	0.0	0.04	14.00	0.00	2.248	5.95	0.00	3.7	96.3	0.0	-0.17	0.53	0.65	0.86	4.26	3147	417	4	0	3	0	0	logfile
✔	7URM	26714	2023-04-19	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	6MSD	9217	2023-04-19	2018-10-16	3.2	3.65	—	3.0	0.007	1.05	2.0	0.06	11.55	0.01	2.019	5.69	0.50	8.3	91.5	0.3	-5.07	0.84	0.81	2.24	3.0	0.004	0.76	0.0	0.04	14.33	0.00	1.854	13.86	0.34	7.9	92.0	0.1	-0.89	0.79	0.86	0.87	1.84	105426	13526	55	0	12	0	0	logfile
✔	7W38	32273	2023-04-19	2021-11-25	3.1	4.31	—	2.8	0.004	0.80	0.0	0.05	13.91	0.01	1.750	5.47	0.18	5.7	94.2	0.1	-0.59	0.84	0.80	2.24	2.8	0.003	0.57	0.0	0.04	15.11	0.00	1.881	9.56	0.22	5.6	94.4	0.1	0.87	0.33	0.88	0.89	1.76	106178	13539	55	0	13	0	0	logfile
✔	7W37	32272	2023-04-19	2021-11-25	3.0	4.26	—	2.8	0.004	0.80	0.0	0.05	13.99	0.01	1.712	5.02	0.15	5.8	94.1	0.1	-0.60	0.85	0.84	2.30	2.8	0.004	0.64	0.0	0.04	15.35	0.00	1.813	9.96	0.76	6.3	93.7	0.1	0.87	0.33	0.88	0.89	1.95	106025	13527	54	0	13	0	0	logfile
✔	5Lii	4053	2023-04-19	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	7VV6	32139	2023-04-19	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.004	0.65	0.0	0.04	17.06	0.00	2.195	6.88	0.00	3.3	96.7	0.0	2.95	0.67	0.65	0.86	1.49	2227	271	1	0	2	0	0	logfile
✔	7JVA	22497	2023-04-19	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.51	0.0	0.09	10.09	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.004	0.72	0.0	0.04	14.75	0.00	2.198	8.95	0.61	3.6	96.4	0.0	-0.18	0.69	0.85	0.82	2.55	3248	420	4	0	3	0	0	logfile
✔	7LY0	23581	2023-04-19	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.19	0.0	0.08	9.79	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.005	0.71	0.0	0.05	15.89	0.00	2.125	8.84	2.86	2.7	97.3	0.0	0.06	1.63	0.69	0.76	4.26	2805	354	5	0	6	0	0	logfile
✔	7WRZ	32738	2023-04-19	2022-01-28	3.26	3.44	—	3.4	0.004	0.62	0.0	0.04	13.70	0.01	2.201	6.90	0.00	5.9	94.1	0.0	-1.03	0.65	0.85	3.98	3.4	0.003	0.55	0.0	0.04	15.74	0.00	2.234	6.43	0.00	5.4	94.3	0.2	-0.80	1.14	0.62	0.85	3.37	3270	414	4	0	2	0	0	logfile
✔	6X0V	21985	2023-04-19	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7R7N	24299	2023-04-19	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.48	0.00	2.553	0.78	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.004	0.75	0.0	0.05	14.46	0.00	2.255	8.72	0.45	5.6	94.4	0.0	-1.27	1.32	0.83	0.80	2.47	2790	391	4	0	3	0	0	logfile
✔	7USB	26731	2023-04-19	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.69	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.005	0.80	0.0	0.05	13.73	0.00	2.361	5.78	0.69	5.5	94.5	0.0	-1.74	0.61	0.61	0.84	5.05	1661	213	3	0	5	0	0	logfile
✔	7B0U	11971	2023-04-19	2020-11-22	3.86	4.15	—	4.1	0.004	0.71	4.0	0.04	12.48	0.00	2.196	16.72	0.54	5.8	94.2	0.0	-0.21	0.66	0.74	0.48	4.1	0.004	0.70	0.0	0.04	14.96	0.00	2.096	18.38	0.41	6.8	93.2	0.0	-0.05	0.46	0.67	0.75	0.50	105492	13320	60	0	0	0	0	logfile
✔	7QES	13939	2023-04-19	2021-12-03	2.6	3.37	—	3.0	0.006	0.86	0.0	0.04	13.93	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.64	0.0	0.04	15.49	0.00	2.170	4.71	1.22	3.4	96.6	0.0	2.50	1.24	0.78	0.87	2.88	3076	366	6	0	10	14	0	logfile
✔	7K45	22660	2023-04-19	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.42	0.0	0.08	9.48	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.003	0.67	0.0	0.04	14.29	0.00	2.252	7.78	0.00	2.7	97.3	0.0	0.21	1.29	0.81	0.80	2.65	3038	419	4	0	2	0	0	logfile
✔	7QEo	13935	2023-04-19	2021-12-03	2.9	3.47	—	3.1	0.007	0.78	0.0	0.04	13.54	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.64	0.0	0.04	15.50	0.00	2.182	6.20	0.91	3.1	96.9	0.0	2.77	0.47	0.78	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	7E39	30977	2023-04-19	2021-02-08	3.7	3.11	—	2.9	0.005	0.77	0.0	0.05	14.37	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.63	0.0	0.05	15.71	0.00	2.190	10.48	0.00	5.2	94.8	0.0	-2.15	0.43	0.49	0.73	2.16	3074	414	4	0	1	0	0	logfile
✔	5XY3	6784	2023-04-19	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.22	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.008	0.82	1.0	0.05	16.69	0.01	1.918	8.25	0.93	6.4	93.2	0.4	-1.44	0.61	0.78	0.86	2.28	107145	5917	43	2815	0	0	0	logfile

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