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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EET | 28057 | 2023-04-19 | 2022-09-07 | 3.1 | 3.36 | 3.21 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 12.28 | 0.00 | 0.312 | 9.93 | 1.07 | 0.5 | 99.5 | 0.0 | 1.87 | 0.72 | 0.82 | 3.55 | 3.4 | 0.037 | 2.69 | 0.0 | 0.32 | 14.46 | 0.00 | 0.378 | 13.19 | 0.11 | 1.1 | 98.9 | 0.0 | 2.07 | 1.31 | 0.68 | 0.83 | 2.96 | 107640 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 7TAS | 25783 | 2023-04-19 | 2021-12-21 | 3.2 | 3.49 | 3.25 | 3.4 | 0.013 | 1.50 | 0.0 | 0.09 | 11.50 | 0.01 | 2.452 | 3.63 | 1.69 | 3.9 | 96.1 | 0.0 | -1.01 | 0.68 | 0.83 | 4.31 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 14.00 | 0.00 | 2.248 | 5.95 | 0.00 | 3.7 | 96.3 | 0.0 | -0.17 | 0.53 | 0.65 | 0.86 | 4.26 | 3147 | 417 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7URM | 26714 | 2023-04-19 | 2022-04-22 | 3.0 | 3.11 | 3.56 | 2.9 | 0.009 | 1.41 | 0.0 | 0.11 | 23.67 | 0.01 | 2.440 | 0.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.14 | 0.53 | — | 3.0 | 0.007 | 1.16 | 0.0 | 0.05 | 22.87 | 0.01 | 1.983 | 29.94 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.15 | 0.54 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 6MSD | 9217 | 2023-04-19 | 2018-10-16 | 3.2 | 3.65 | — | 3.0 | 0.007 | 1.05 | 2.0 | 0.06 | 11.55 | 0.01 | 2.019 | 5.69 | 0.50 | 8.3 | 91.5 | 0.3 | -5.07 | 0.84 | 0.81 | 2.24 | 3.0 | 0.004 | 0.76 | 0.0 | 0.04 | 14.33 | 0.00 | 1.854 | 13.86 | 0.34 | 7.9 | 92.0 | 0.1 | -0.89 | 0.79 | 0.86 | 0.87 | 1.84 | 105426 | 13526 | 55 | 0 | 12 | 0 | 0 | logfile |
✔ | 7W38 | 32273 | 2023-04-19 | 2021-11-25 | 3.1 | 4.31 | — | 2.8 | 0.004 | 0.80 | 0.0 | 0.05 | 13.91 | 0.01 | 1.750 | 5.47 | 0.18 | 5.7 | 94.2 | 0.1 | -0.59 | 0.84 | 0.80 | 2.24 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.11 | 0.00 | 1.881 | 9.56 | 0.22 | 5.6 | 94.4 | 0.1 | 0.87 | 0.33 | 0.88 | 0.89 | 1.76 | 106178 | 13539 | 55 | 0 | 13 | 0 | 0 | logfile |
✔ | 7W37 | 32272 | 2023-04-19 | 2021-11-25 | 3.0 | 4.26 | — | 2.8 | 0.004 | 0.80 | 0.0 | 0.05 | 13.99 | 0.01 | 1.712 | 5.02 | 0.15 | 5.8 | 94.1 | 0.1 | -0.60 | 0.85 | 0.84 | 2.30 | 2.8 | 0.004 | 0.64 | 0.0 | 0.04 | 15.35 | 0.00 | 1.813 | 9.96 | 0.76 | 6.3 | 93.7 | 0.1 | 0.87 | 0.33 | 0.88 | 0.89 | 1.95 | 106025 | 13527 | 54 | 0 | 13 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2023-04-19 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VV6 | 32139 | 2023-04-19 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.38 | 0.0 | 0.07 | 19.04 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 17.06 | 0.00 | 2.195 | 6.88 | 0.00 | 3.3 | 96.7 | 0.0 | 2.95 | 0.67 | 0.65 | 0.86 | 1.49 | 2227 | 271 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7JVA | 22497 | 2023-04-19 | 2020-08-20 | 3.6 | 3.93 | 3.68 | 3.9 | 0.016 | 1.51 | 0.0 | 0.09 | 10.09 | 0.01 | 2.398 | 0.80 | 0.30 | 1.0 | 98.8 | 0.2 | 0.87 | 0.84 | 0.81 | 3.50 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 14.75 | 0.00 | 2.198 | 8.95 | 0.61 | 3.6 | 96.4 | 0.0 | -0.18 | 0.69 | 0.85 | 0.82 | 2.55 | 3248 | 420 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7LY0 | 23581 | 2023-04-19 | 2021-03-05 | 2.6 | 2.57 | 2.63 | 2.7 | 0.012 | 1.19 | 0.0 | 0.08 | 9.79 | 0.01 | 2.515 | 0.55 | 0.36 | 1.2 | 98.8 | 0.0 | 1.70 | 0.61 | 0.70 | 5.23 | 2.7 | 0.005 | 0.71 | 0.0 | 0.05 | 15.89 | 0.00 | 2.125 | 8.84 | 2.86 | 2.7 | 97.3 | 0.0 | 0.06 | 1.63 | 0.69 | 0.76 | 4.26 | 2805 | 354 | 5 | 0 | 6 | 0 | 0 | logfile |
✔ | 7WRZ | 32738 | 2023-04-19 | 2022-01-28 | 3.26 | 3.44 | — | 3.4 | 0.004 | 0.62 | 0.0 | 0.04 | 13.70 | 0.01 | 2.201 | 6.90 | 0.00 | 5.9 | 94.1 | 0.0 | -1.03 | 0.65 | 0.85 | 3.98 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 15.74 | 0.00 | 2.234 | 6.43 | 0.00 | 5.4 | 94.3 | 0.2 | -0.80 | 1.14 | 0.62 | 0.85 | 3.37 | 3270 | 414 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6X0V | 21985 | 2023-04-19 | 2020-05-17 | 4.5 | 4.37 | — | 4.4 | 0.003 | 0.62 | 1.0 | 0.04 | 11.58 | 0.00 | 2.285 | 15.16 | 4.48 | 3.5 | 96.0 | 0.5 | -2.45 | 0.40 | 0.74 | — | 4.4 | 0.002 | 0.49 | 0.0 | 0.04 | 12.98 | 0.00 | 2.224 | 17.83 | 0.00 | 5.0 | 95.0 | 0.0 | 2.29 | 1.20 | 0.40 | 0.76 | — | 1384 | 211 | 4 | 0 | 0 | 0 | 62 | logfile |
✔ | 7R7N | 24299 | 2023-04-19 | 2021-06-25 | 3.95 | 4.08 | 3.93 | 4.1 | 0.010 | 1.24 | 0.0 | 0.07 | 9.48 | 0.00 | 2.553 | 0.78 | 0.45 | 3.2 | 96.8 | 0.0 | 0.00 | 0.81 | 0.77 | 3.23 | 4.0 | 0.004 | 0.75 | 0.0 | 0.05 | 14.46 | 0.00 | 2.255 | 8.72 | 0.45 | 5.6 | 94.4 | 0.0 | -1.27 | 1.32 | 0.83 | 0.80 | 2.47 | 2790 | 391 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7USB | 26731 | 2023-04-19 | 2022-04-23 | 3.1 | 3.28 | 3.18 | 3.3 | 0.013 | 1.72 | 0.0 | 0.11 | 10.69 | 0.01 | 2.590 | 1.61 | 1.39 | 5.5 | 94.5 | 0.0 | -0.28 | 0.59 | 0.76 | 5.40 | 3.3 | 0.005 | 0.80 | 0.0 | 0.05 | 13.73 | 0.00 | 2.361 | 5.78 | 0.69 | 5.5 | 94.5 | 0.0 | -1.74 | 0.61 | 0.61 | 0.84 | 5.05 | 1661 | 213 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 7B0U | 11971 | 2023-04-19 | 2020-11-22 | 3.86 | 4.15 | — | 4.1 | 0.004 | 0.71 | 4.0 | 0.04 | 12.48 | 0.00 | 2.196 | 16.72 | 0.54 | 5.8 | 94.2 | 0.0 | -0.21 | 0.66 | 0.74 | 0.48 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 14.96 | 0.00 | 2.096 | 18.38 | 0.41 | 6.8 | 93.2 | 0.0 | -0.05 | 0.46 | 0.67 | 0.75 | 0.50 | 105492 | 13320 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QES | 13939 | 2023-04-19 | 2021-12-03 | 2.6 | 3.37 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.04 | 13.93 | 0.00 | 2.122 | 3.25 | 0.00 | 3.9 | 96.1 | 0.0 | -0.99 | 0.77 | 0.86 | 3.39 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 15.49 | 0.00 | 2.170 | 4.71 | 1.22 | 3.4 | 96.6 | 0.0 | 2.50 | 1.24 | 0.78 | 0.87 | 2.88 | 3076 | 366 | 6 | 0 | 10 | 14 | 0 | logfile |
✔ | 7K45 | 22660 | 2023-04-19 | 2020-09-14 | 3.7 | 3.90 | 3.76 | 3.9 | 0.014 | 1.42 | 0.0 | 0.08 | 9.48 | 0.01 | 2.568 | 0.35 | 0.00 | 2.2 | 97.8 | 0.0 | 0.92 | 0.79 | 0.78 | 4.02 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 14.29 | 0.00 | 2.252 | 7.78 | 0.00 | 2.7 | 97.3 | 0.0 | 0.21 | 1.29 | 0.81 | 0.80 | 2.65 | 3038 | 419 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7QEo | 13935 | 2023-04-19 | 2021-12-03 | 2.9 | 3.47 | — | 3.1 | 0.007 | 0.78 | 0.0 | 0.04 | 13.54 | 0.00 | 2.106 | 5.39 | 0.00 | 3.9 | 96.1 | 0.0 | 0.61 | 0.78 | 0.88 | 3.13 | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 15.50 | 0.00 | 2.182 | 6.20 | 0.91 | 3.1 | 96.9 | 0.0 | 2.77 | 0.47 | 0.78 | 0.88 | 2.74 | 3056 | 368 | 6 | 0 | 6 | 4 | 0 | logfile |
✔ | 7E39 | 30977 | 2023-04-19 | 2021-02-08 | 3.7 | 3.11 | — | 2.9 | 0.005 | 0.77 | 0.0 | 0.05 | 14.37 | 0.01 | 2.130 | 15.98 | 0.00 | 10.1 | 89.9 | 0.0 | -3.52 | 0.50 | 0.74 | 2.30 | 2.9 | 0.003 | 0.63 | 0.0 | 0.05 | 15.71 | 0.00 | 2.190 | 10.48 | 0.00 | 5.2 | 94.8 | 0.0 | -2.15 | 0.43 | 0.49 | 0.73 | 2.16 | 3074 | 414 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 5XY3 | 6784 | 2023-04-19 | 2017-07-06 | 3.2 | 3.24 | — | 3.2 | 0.006 | 1.04 | 7.0 | 0.09 | 17.01 | 0.00 | 1.123 | 6.22 | 3.45 | 6.0 | 92.7 | 1.3 | -3.33 | 0.61 | 0.76 | 2.54 | 3.2 | 0.008 | 0.82 | 1.0 | 0.05 | 16.69 | 0.01 | 1.918 | 8.25 | 0.93 | 6.4 | 93.2 | 0.4 | -1.44 | 0.61 | 0.78 | 0.86 | 2.28 | 107145 | 5917 | 43 | 2815 | 0 | 0 | 0 | logfile |