Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	4CE4	2490	2022-12-19	2013-11-08	4.9	5.03	—	5.0	0.004	0.79	0.0	0.04	14.48	0.00	1.398	13.86	2.64	5.3	94.5	0.2	-2.30	0.47	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	4Ci0	2513	2022-12-16	2013-12-05	3.36	3.44	—	3.4	0.014	1.93	26.0	1.74	23.74	0.03	1.915	124.97	39.11	3.4	96.5	0.1	1.78	0.67	0.66	0.30	3.4	0.015	2.76	0.0	0.54	18.66	0.00	1.979	26.09	0.79	4.9	95.1	0.0	-0.73	1.81	0.78	0.87	1.60	90428	11609	78	0	117	0	0	logfile
✔	4Ui9	2924	2022-12-13	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	20.01	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.004	0.84	0.0	0.04	17.09	0.00	2.082	16.90	0.40	5.9	93.7	0.4	0.73	3.18	0.89	0.84	1.27	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2022-12-12	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.003	0.80	0.0	0.04	12.02	0.00	2.089	16.52	0.00	10.1	88.5	1.5	-1.41	1.66	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	4UY8	2773	2022-12-16	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.40	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.004	0.65	0.0	0.03	17.10	0.01	1.501	60.50	1.68	16.8	81.0	2.1	-3.46	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	4V19	2787	2022-12-14	2014-09-25	3.4	3.44	—	3.4	0.009	1.23	0.0	0.05	20.02	0.01	1.860	9.79	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.004	0.67	0.0	0.04	19.00	0.01	1.117	8.81	0.45	3.9	96.1	0.1	-0.23	2.80	0.76	0.88	2.11	69409	4361	42	1583	171	204	0	logfile
✔	4V1A	2787	2022-12-16	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.20	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.69	0.0	0.04	16.83	0.00	2.076	10.41	0.15	4.3	95.6	0.1	0.54	1.91	0.38	0.78	1.67	31917	3843	24	0	94	0	0	logfile
✔	4V1W	2788	2022-12-16	2014-10-02	4.7	4.69	—	4.7	0.020	2.45	172.0	0.17	18.97	0.01	2.533	7.94	7.67	3.0	96.5	0.6	-2.40	0.74	0.84	—	4.6	0.005	0.96	0.0	0.05	15.89	0.01	2.137	30.48	0.00	4.1	95.9	0.0	0.39	2.81	0.74	0.78	—	32736	4080	24	0	0	0	0	logfile
✔	5A0Q	2981	2022-12-21	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.84	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.005	0.86	0.0	0.05	17.73	0.01	2.106	22.39	1.13	5.3	94.5	0.1	-1.70	0.97	0.64	0.64	1.12	43448	5582	34	0	6	0	0	logfile
✔	5A1A	2984	2022-12-18	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.28	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.74	0.0	0.05	17.59	0.00	1.925	12.64	2.89	3.2	96.7	0.1	-0.61	0.61	0.53	0.79	3.95	33696	4088	12	0	20	776	0	logfile
✔	5A22	6337	2022-12-16	2015-05-06	3.8	4.20	—	4.2	0.009	1.49	0.0	0.06	15.75	0.01	2.014	14.23	5.57	13.9	84.2	2.0	-5.08	0.72	0.82	1.68	4.1	0.003	0.75	0.0	0.04	16.86	0.01	1.849	17.86	0.61	12.0	87.0	1.0	-1.42	2.67	0.68	0.75	1.43	32187	2002	1	0	2	0	16110	logfile
✔	5A2Q	3019	2022-12-15	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	19.81	0.01	1.830	13.41	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	3.9	0.004	0.72	0.0	0.04	18.72	0.00	1.818	15.77	0.82	5.1	94.8	0.1	-0.34	1.60	0.86	0.82	1.23	80749	4931	45	1922	115	144	0	logfile
✔	5A63	3061	2022-12-12	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.68	8.0	0.11	19.25	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.003	0.73	0.0	0.04	17.91	0.00	2.229	12.49	0.57	4.8	94.8	0.4	0.18	3.22	0.62	0.81	1.66	10003	1223	13	0	22	0	0	logfile
✔	5A6E	3062	2022-12-12	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.003	0.58	0.0	0.03	10.50	0.00	1.994	10.27	0.00	6.4	93.6	0.0	-0.83	1.50	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2022-12-12	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.7	0.002	0.57	0.0	0.04	10.94	0.00	2.010	10.19	0.00	5.1	94.9	0.0	-1.00	0.99	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✘	5A7U	3079	2022-12-18	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	5A8L	3099	2022-12-12	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.006	0.97	0.0	0.05	17.64	0.01	1.991	23.78	0.57	11.9	87.0	1.1	-2.68	1.53	0.23	0.63	0.73	12264	624	9	347	0	0	0	logfile
✔	5ACo	3121	2022-12-14	2015-08-17	4.36	4.52	—	4.3	0.012	1.91	3.0	0.11	10.21	0.02	1.986	10.87	0.29	9.1	88.9	1.9	-2.40	0.70	0.68	—	4.3	0.005	0.79	0.0	0.05	11.29	0.00	2.136	13.50	0.00	7.9	91.5	0.6	-1.09	1.61	0.82	0.84	—	21297	2415	69	0	192	0	0	logfile
✔	5ADX	2856	2022-12-22	2015-08-24	4.0	4.18	—	4.0	0.008	1.05	1.0	0.06	12.82	0.00	1.155	3.45	1.97	6.3	93.5	0.3	-2.81	0.77	0.63	—	4.0	0.004	0.71	0.0	0.04	14.81	0.00	2.081	12.00	0.29	5.6	94.4	0.0	-0.57	0.91	0.86	0.79	—	49392	4737	27	0	2569	0	0	logfile

• ← previous
• Page 5 of 443
• next →