Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5GAQ	8015	2023-04-25	2016-01-05	3.1	3.36	—	3.2	0.006	1.02	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20574	2592	9	0	0	0	0	logfile
✘	5GJV	9513	2023-04-26	2016-07-02	3.6	3.69	—	3.7	0.013	1.62	32.0	0.08	14.85	0.01	1.695	18.01	4.57	11.6	86.4	2.0	-5.08	0.54	0.79	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	14	0	43	0	0	logfile
✘	5GJW	9515	2023-04-25	2016-07-02	3.9	4.02	—	4.0	0.012	1.51	20.0	0.08	11.56	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	5GKY	9518	2023-04-21	2016-07-07	3.8	4.18	—	4.0	0.017	1.70	19.0	0.10	11.29	0.01	1.789	19.04	0.51	5.8	91.8	2.5	-2.71	0.73	0.79	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111036	15068	12	0	4	0	0	logfile
✘	5GKZ	9519	2023-04-21	2016-07-07	4.0	4.10	—	4.0	0.019	1.71	36.0	0.11	11.29	0.01	1.755	15.04	0.51	6.5	91.2	2.3	-2.89	0.72	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GL0	9520	2023-04-21	2016-07-07	4.2	4.40	—	4.2	0.018	1.72	17.0	0.10	11.34	0.01	1.957	21.25	0.51	6.5	90.6	2.9	-2.58	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GM6	9524	2023-04-21	2016-07-12	3.5	3.61	—	3.6	0.012	1.33	11.0	0.08	13.79	0.01	1.303	18.95	3.36	6.6	92.1	1.2	-3.54	0.58	0.83	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112064	12796	55	361	881	0	0	logfile
✘	5GMK	9525	2023-04-28	2016-07-14	3.4	3.52	—	3.5	0.012	1.25	16.0	0.07	13.99	0.01	1.378	19.35	2.77	7.7	91.2	1.0	-3.71	0.47	0.53	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75273	8026	51	404	981	0	0	logfile
✘	5GUP	9539	2023-04-21	2016-08-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✘	5GW4	9540	2023-04-22	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5GW5	9541	2023-04-22	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	5H3o	6656	2023-04-24	2016-10-26	3.5	3.66	—	3.6	0.015	1.48	4.0	0.08	16.00	0.01	2.235	19.87	6.55	6.0	93.4	0.6	-3.19	0.78	0.86	1.93	3.6	0.003	0.73	0.0	0.04	17.32	0.00	1.733	13.35	0.43	3.0	97.0	0.0	0.89	0.82	0.73	0.81	1.00	16958	2040	8	0	7	0	0	logfile
✔	5Hi9	6580	2023-04-25	2016-01-11	4.4	4.53	—	4.4	0.009	1.46	20.0	0.09	13.13	0.01	2.033	23.50	0.93	7.7	91.4	0.8	-4.25	0.73	0.73	—	4.4	0.003	0.82	0.0	0.04	13.60	0.00	2.101	17.09	0.00	6.9	93.1	0.0	-1.69	2.49	0.75	0.77	—	19636	2408	4	0	0	0	0	logfile
✔	5iRX	8117	2023-04-22	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.73	0.0	0.04	16.65	0.00	2.241	8.73	1.73	8.2	91.8	0.0	-0.58	0.68	0.62	0.82	1.93	13162	1726	12	0	20	0	0	logfile
✔	5iRZ	8118	2023-04-22	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	16.19	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.61	0.0	0.04	15.99	0.00	2.158	8.90	0.28	7.1	92.9	0.0	0.91	0.68	0.65	0.84	2.94	12504	1576	8	0	24	0	0	logfile
✔	5iS0	8119	2023-04-22	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	10.52	0.01	1.283	5.42	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	3.2	0.003	0.75	0.0	0.04	14.23	0.00	2.152	11.06	0.28	5.4	94.6	0.0	-0.22	1.47	0.63	0.81	2.48	11808	1576	8	0	4	0	0	logfile
✔	5iT9	8124	2023-04-29	2016-03-16	3.8	3.86	3.80	3.9	0.007	1.31	42.0	0.10	21.51	0.01	0.713	10.39	9.44	11.2	84.3	4.6	-3.05	0.60	0.76	0.99	3.8	0.005	0.84	0.0	0.04	19.92	0.01	1.810	19.12	1.00	11.9	86.6	1.5	-2.03	1.72	0.62	0.79	1.00	80144	4848	43	1972	83	0	0	logfile
✔	5J8V	8073	2023-04-27	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✔	5JLF	8162	2023-04-23	2016-04-27	3.6	3.99	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.67	0.69	2.49	3.7	0.004	0.77	0.0	0.04	14.98	0.00	1.921	15.48	0.39	3.8	96.0	0.3	-0.38	1.42	0.70	0.75	2.02	15800	1835	12	0	280	0	0	logfile
✔	5JLF	8163	2023-04-23	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.004	0.74	0.0	0.04	15.08	0.00	1.930	13.10	0.45	3.6	96.1	0.3	0.05	1.43	0.68	0.84	1.89	15800	1835	12	0	280	0	0	logfile

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