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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 4CE4 | 2490 | 2022-12-19 | 2013-11-08 | 4.9 | 5.03 | — | 5.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.48 | 0.00 | 1.398 | 13.86 | 2.64 | 5.3 | 94.5 | 0.2 | -2.30 | 0.47 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 4Ci0 | 2513 | 2022-12-16 | 2013-12-05 | 3.36 | 3.44 | — | 3.4 | 0.014 | 1.93 | 26.0 | 1.74 | 23.74 | 0.03 | 1.915 | 124.97 | 39.11 | 3.4 | 96.5 | 0.1 | 1.78 | 0.67 | 0.66 | 0.30 | 3.4 | 0.015 | 2.76 | 0.0 | 0.54 | 18.66 | 0.00 | 1.979 | 26.09 | 0.79 | 4.9 | 95.1 | 0.0 | -0.73 | 1.81 | 0.78 | 0.87 | 1.60 | 90428 | 11609 | 78 | 0 | 117 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2022-12-13 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 20.01 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.004 | 0.84 | 0.0 | 0.04 | 17.09 | 0.00 | 2.082 | 16.90 | 0.40 | 5.9 | 93.7 | 0.4 | 0.73 | 3.18 | 0.89 | 0.84 | 1.27 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2022-12-12 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.003 | 0.80 | 0.0 | 0.04 | 12.02 | 0.00 | 2.089 | 16.52 | 0.00 | 10.1 | 88.5 | 1.5 | -1.41 | 1.66 | 0.55 | 0.73 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-12-16 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 67.37 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.103 | 29.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2022-12-16 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.40 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.004 | 0.65 | 0.0 | 0.03 | 17.10 | 0.01 | 1.501 | 60.50 | 1.68 | 16.8 | 81.0 | 2.1 | -3.46 | 1.60 | 0.58 | 0.80 | 1.11 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 4V19 | 2787 | 2022-12-14 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.23 | 0.0 | 0.05 | 20.02 | 0.01 | 1.860 | 9.79 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.004 | 0.67 | 0.0 | 0.04 | 19.00 | 0.01 | 1.117 | 8.81 | 0.45 | 3.9 | 96.1 | 0.1 | -0.23 | 2.80 | 0.76 | 0.88 | 2.11 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 4V1A | 2787 | 2022-12-16 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.20 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.83 | 0.00 | 2.076 | 10.41 | 0.15 | 4.3 | 95.6 | 0.1 | 0.54 | 1.91 | 0.38 | 0.78 | 1.67 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✔ | 4V1W | 2788 | 2022-12-16 | 2014-10-02 | 4.7 | 4.69 | — | 4.7 | 0.020 | 2.45 | 172.0 | 0.17 | 18.97 | 0.01 | 2.533 | 7.94 | 7.67 | 3.0 | 96.5 | 0.6 | -2.40 | 0.74 | 0.84 | — | 4.6 | 0.005 | 0.96 | 0.0 | 0.05 | 15.89 | 0.01 | 2.137 | 30.48 | 0.00 | 4.1 | 95.9 | 0.0 | 0.39 | 2.81 | 0.74 | 0.78 | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A0Q | 2981 | 2022-12-21 | 2015-04-22 | 3.5 | 3.34 | — | 3.3 | 0.019 | 2.22 | 14.0 | 0.11 | 15.42 | 0.02 | 0.702 | 33.84 | 1.99 | 4.5 | 95.1 | 0.4 | -3.18 | 0.60 | 0.61 | 1.82 | 3.3 | 0.005 | 0.86 | 0.0 | 0.05 | 17.73 | 0.01 | 2.106 | 22.39 | 1.13 | 5.3 | 94.5 | 0.1 | -1.70 | 0.97 | 0.64 | 0.64 | 1.12 | 43448 | 5582 | 34 | 0 | 6 | 0 | 0 | logfile |
✔ | 5A1A | 2984 | 2022-12-18 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.14 | 0.01 | 0.020 | 14.28 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.004 | 0.74 | 0.0 | 0.05 | 17.59 | 0.00 | 1.925 | 12.64 | 2.89 | 3.2 | 96.7 | 0.1 | -0.61 | 0.61 | 0.53 | 0.79 | 3.95 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 5A22 | 6337 | 2022-12-16 | 2015-05-06 | 3.8 | 4.20 | — | 4.2 | 0.009 | 1.49 | 0.0 | 0.06 | 15.75 | 0.01 | 2.014 | 14.23 | 5.57 | 13.9 | 84.2 | 2.0 | -5.08 | 0.72 | 0.82 | 1.68 | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 16.86 | 0.01 | 1.849 | 17.86 | 0.61 | 12.0 | 87.0 | 1.0 | -1.42 | 2.67 | 0.68 | 0.75 | 1.43 | 32187 | 2002 | 1 | 0 | 2 | 0 | 16110 | logfile |
✔ | 5A2Q | 3019 | 2022-12-15 | 2015-05-21 | 3.9 | 4.01 | — | 3.9 | 0.008 | 1.23 | 0.0 | 0.05 | 19.81 | 0.01 | 1.830 | 13.41 | 12.93 | 4.3 | 95.5 | 0.2 | -3.44 | 0.89 | 0.88 | 1.18 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.72 | 0.00 | 1.818 | 15.77 | 0.82 | 5.1 | 94.8 | 0.1 | -0.34 | 1.60 | 0.86 | 0.82 | 1.23 | 80749 | 4931 | 45 | 1922 | 115 | 144 | 0 | logfile |
✔ | 5A63 | 3061 | 2022-12-12 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.68 | 8.0 | 0.11 | 19.25 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 17.91 | 0.00 | 2.229 | 12.49 | 0.57 | 4.8 | 94.8 | 0.4 | 0.18 | 3.22 | 0.62 | 0.81 | 1.66 | 10003 | 1223 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2022-12-12 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.003 | 0.58 | 0.0 | 0.03 | 10.50 | 0.00 | 1.994 | 10.27 | 0.00 | 6.4 | 93.6 | 0.0 | -0.83 | 1.50 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 5A6F | 3063 | 2022-12-12 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.7 | 0.002 | 0.57 | 0.0 | 0.04 | 10.94 | 0.00 | 2.010 | 10.19 | 0.00 | 5.1 | 94.9 | 0.0 | -1.00 | 0.99 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✘ | 5A7U | 3079 | 2022-12-18 | 2015-07-10 | 4.8 | 3.82 | — | 4.6 | 0.020 | 3.41 | 3.0 | 0.25 | 21.78 | 0.08 | 2.651 | 30.77 | 25.00 | 24.0 | 72.0 | 4.0 | -6.05 | -0.01 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✔ | 5A8L | 3099 | 2022-12-12 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 9.01 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.006 | 0.97 | 0.0 | 0.05 | 17.64 | 0.01 | 1.991 | 23.78 | 0.57 | 11.9 | 87.0 | 1.1 | -2.68 | 1.53 | 0.23 | 0.63 | 0.73 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 5ACo | 3121 | 2022-12-14 | 2015-08-17 | 4.36 | 4.52 | — | 4.3 | 0.012 | 1.91 | 3.0 | 0.11 | 10.21 | 0.02 | 1.986 | 10.87 | 0.29 | 9.1 | 88.9 | 1.9 | -2.40 | 0.70 | 0.68 | — | 4.3 | 0.005 | 0.79 | 0.0 | 0.05 | 11.29 | 0.00 | 2.136 | 13.50 | 0.00 | 7.9 | 91.5 | 0.6 | -1.09 | 1.61 | 0.82 | 0.84 | — | 21297 | 2415 | 69 | 0 | 192 | 0 | 0 | logfile |
✔ | 5ADX | 2856 | 2022-12-22 | 2015-08-24 | 4.0 | 4.18 | — | 4.0 | 0.008 | 1.05 | 1.0 | 0.06 | 12.82 | 0.00 | 1.155 | 3.45 | 1.97 | 6.3 | 93.5 | 0.3 | -2.81 | 0.77 | 0.63 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 14.81 | 0.00 | 2.081 | 12.00 | 0.29 | 5.6 | 94.4 | 0.0 | -0.57 | 0.91 | 0.86 | 0.79 | — | 49392 | 4737 | 27 | 0 | 2569 | 0 | 0 | logfile |