Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o4U	3746	2022-12-15	2017-05-31	4.2	4.27	4.23	4.3	0.007	1.26	2.0	0.08	11.28	0.01	0.586	16.09	1.75	17.3	82.7	0.0	-4.67	0.39	0.70	—	4.2	0.004	0.81	0.0	0.06	12.48	0.01	2.114	17.13	0.04	15.9	84.1	0.0	-2.89	1.34	0.45	0.75	—	24528	3312	16	0	0	0	0	logfile
✔	6N30	9335	2022-12-19	2018-11-14	3.2	3.45	3.17	3.4	0.011	1.27	10.0	0.07	10.68	0.01	0.590	11.93	0.78	4.1	95.8	0.2	-2.69	0.63	0.73	4.10	3.4	0.003	0.71	0.0	0.05	13.87	0.00	1.930	11.42	0.35	3.9	96.1	0.0	0.56	1.19	0.70	0.85	3.10	34851	4694	27	0	26	0	0	logfile
✔	7PBX	13308	2022-12-12	2021-08-02	3.43	3.70	3.43	3.1	0.032	2.53	206.0	0.21	19.43	0.02	0.597	32.75	11.71	3.1	95.3	1.6	1.29	0.69	0.65	1.83	3.1	0.008	1.25	23.0	0.06	17.52	0.01	1.506	26.92	0.10	3.3	96.2	0.4	0.56	1.28	0.90	0.86	1.97	59472	8015	35	0	28	0	0	logfile
✔	6MLQ	9140	2022-12-12	2018-09-27	4.2	4.98	—	4.9	0.008	1.08	0.0	0.06	12.96	0.01	0.597	14.33	1.54	9.6	90.4	0.0	-4.37	0.74	0.77	—	4.9	0.003	0.81	0.0	0.05	13.86	0.00	1.845	21.62	0.20	9.2	90.8	0.0	-1.39	1.11	0.72	0.76	—	9197	1164	6	1	5	0	0	logfile
✔	7WCo	32426	2022-12-12	2021-12-20	3.8	3.90	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.28	0.53	14.2	85.8	0.0	-5.43	0.28	0.77	2.77	3.9	0.003	0.73	0.0	0.04	15.01	0.01	2.177	8.75	1.50	8.1	91.9	0.0	-2.37	1.57	0.30	0.82	2.80	10740	1434	18	0	0	0	0	logfile
✘	5G05	3388	2022-12-19	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.80	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63181	8027	21	0	3	0	0	logfile
✔	5LMX	4088	2022-12-16	2016-08-02	4.9	5.64	—	4.9	0.011	1.55	0.0	0.06	18.69	0.01	0.614	16.63	8.43	6.5	92.9	0.6	-2.70	0.80	0.62	—	4.9	0.003	0.74	0.0	0.04	14.47	0.00	2.028	18.19	0.03	4.5	95.5	0.1	-0.23	1.35	0.87	0.79	—	31118	3918	19	0	6	0	0	logfile
✔	7NAT	12247	2022-12-22	2021-01-25	3.59	4.72	3.68	2.6	0.009	0.84	6.0	0.05	15.98	0.02	0.616	27.72	0.00	7.4	92.6	0.0	-3.28	0.90	0.81	0.72	2.5	0.006	0.76	0.0	0.04	16.82	0.01	1.772	35.30	0.94	5.8	94.2	0.0	-1.47	1.33	0.92	0.87	0.56	50921	2562	25	1430	66	0	0	logfile
✔	7Z6S	14529	2022-12-15	2022-03-14	2.9	3.44	2.81	3.4	0.006	0.85	0.0	0.05	13.98	0.00	0.624	15.56	3.95	4.3	95.6	0.1	-1.15	0.40	0.48	0.80	3.3	0.005	0.85	0.0	0.05	17.73	0.01	1.843	20.26	3.56	4.0	96.0	0.0	-0.74	1.37	0.51	0.77	1.51	19134	2392	12	2	6	0	0	logfile
✔	6QW6	4658	2022-12-16	2019-03-05	2.92	3.02	—	3.0	0.010	1.21	14.0	0.07	15.88	0.01	0.644	10.69	1.79	5.1	94.5	0.4	-3.43	0.62	0.67	2.44	3.0	0.003	0.69	0.0	0.04	17.37	0.00	1.926	16.49	2.17	4.0	96.0	0.0	-0.59	0.81	0.68	0.75	2.30	89236	10350	42	271	5	0	0	logfile
✔	7PBJ	13293	2022-12-12	2021-08-02	3.4	3.54	3.40	3.2	0.018	2.20	140.0	0.13	19.50	0.01	0.650	29.74	11.71	2.5	96.9	0.6	1.69	0.71	0.67	2.07	3.2	0.004	0.71	0.0	0.04	17.39	0.00	1.884	14.06	0.23	3.5	96.5	0.1	0.95	3.41	0.88	0.86	2.05	59486	8015	42	0	28	14	0	logfile
✔	5MPD	3534	2022-12-21	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.79	0.0	0.04	15.38	0.00	2.021	16.92	0.04	5.6	94.2	0.2	-0.45	1.30	0.27	0.61	—	40974	5142	13	0	0	0	0	logfile
✔	7BoH	12243	2022-12-22	2021-01-25	2.82	3.09	2.90	2.8	0.006	0.62	4.0	0.04	13.89	0.02	0.657	6.33	0.00	3.3	96.7	0.0	-1.47	0.82	0.80	2.52	2.8	0.004	0.66	0.0	0.03	14.91	0.01	1.164	12.55	2.38	3.8	96.2	0.0	0.09	0.60	0.87	0.90	2.21	52154	2445	25	1527	157	0	0	logfile
✔	6N1H	8902	2022-12-12	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.68	0.0	0.04	17.82	0.00	2.142	10.27	2.79	6.7	93.3	0.0	0.79	4.74	0.62	0.84	1.69	10991	1328	16	0	0	0	0	logfile
✔	5G5L	3439	2022-12-19	2016-05-26	4.8	5.08	—	4.8	0.010	1.38	14.0	0.09	16.60	0.01	0.675	31.29	7.76	6.0	92.2	1.8	-2.38	0.81	0.71	—	4.8	0.005	0.79	0.0	0.04	13.56	0.00	1.865	22.38	0.00	4.4	95.5	0.1	0.31	2.95	0.86	0.83	—	37349	4686	20	0	7	0	0	logfile
✔	5MQ0	3541	2022-12-15	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	14.99	0.01	0.679	7.94	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.0	0.004	0.72	0.0	0.04	14.56	0.00	1.850	20.19	0.02	6.6	93.3	0.1	0.06	2.11	0.74	0.74	—	77441	9673	52	448	99	0	0	logfile
✔	6i0Y	0322	2022-12-16	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.08	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.007	0.90	0.0	0.04	16.25	0.01	0.951	24.84	1.25	14.6	83.4	2.0	-2.93	1.61	0.61	0.73	0.89	93619	3551	48	3049	144	439	0	logfile
✘	6HWH	0289	2022-12-20	2018-10-12	3.3	3.56	—	3.5	0.012	1.33	1.0	0.07	12.95	0.01	0.691	7.86	0.51	9.4	90.5	0.1	-5.53	0.71	0.82	4.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40632	4916	40	0	420	0	0	logfile
✔	5A0Q	2981	2022-12-21	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.84	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.005	0.86	0.0	0.05	17.73	0.01	2.106	22.39	1.13	5.3	94.5	0.1	-1.70	0.97	0.64	0.64	1.12	43448	5582	34	0	6	0	0	logfile
✔	6RPL	4978	2022-12-17	2019-05-14	3.85	3.98	—	3.9	0.007	0.95	0.0	0.06	14.56	0.01	0.703	18.70	0.60	12.3	87.7	0.0	-4.26	0.75	0.83	3.13	3.9	0.004	0.68	0.0	0.05	16.27	0.00	2.159	12.51	0.54	13.1	86.9	0.0	-3.07	0.84	0.76	0.84	2.29	93960	11340	60	0	0	0	0	logfile

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