Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UGQ	26496	2023-04-27	2022-03-25	3.4	3.41	3.34	3.4	0.007	1.08	4.0	0.10	15.75	0.01	0.915	7.03	7.30	7.3	92.7	0.0	-4.58	0.75	0.79	2.03	3.4	0.004	0.79	0.0	0.05	16.05	0.00	2.113	12.83	0.79	8.0	92.0	0.0	-2.57	1.02	0.79	0.86	1.94	26113	3138	60	0	134	0	0	logfile
✔	7MiD	23847	2023-04-21	2021-04-16	3.56	4.10	—	3.9	0.010	1.02	0.0	0.06	20.24	0.01	0.918	14.61	5.73	8.6	91.3	0.1	-1.30	0.76	0.66	0.22	4.0	0.003	0.72	0.0	0.04	20.05	0.00	2.148	11.09	0.11	5.9	94.1	0.0	0.00	1.89	0.81	0.81	0.91	9789	1080	11	57	6	0	0	logfile
✔	5LL6	4071	2023-04-20	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.04	0.01	0.924	4.96	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.009	1.04	0.0	0.05	19.21	0.01	1.715	25.88	1.94	13.6	85.6	0.9	-3.02	0.89	0.70	0.81	0.98	55262	3429	20	1325	5	0	0	logfile
✔	5LMN	4073	2023-04-20	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.85	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.004	0.72	0.0	0.04	17.13	0.00	1.859	19.78	0.87	7.4	92.2	0.3	-1.09	1.56	0.77	0.84	1.29	54149	2623	27	1534	129	0	0	logfile
✔	7Z2A	14459	2023-04-22	2022-02-26	4.3	4.49	—	4.3	0.012	1.59	2.0	0.09	14.60	0.01	0.925	8.38	0.48	2.8	97.0	0.2	0.00	0.80	0.62	—	4.2	0.003	0.58	0.0	0.04	14.26	0.00	1.831	54.36	0.00	3.8	96.1	0.1	0.72	1.80	0.90	0.80	—	12244	1201	5	0	4	0	2765	logfile
✔	7TE9	25843	2023-04-28	2022-01-04	3.92	4.91	3.93	3.8	0.006	1.06	0.0	0.06	15.48	0.01	0.928	8.68	1.21	9.8	89.6	0.6	-4.42	0.81	0.75	0.65	3.8	0.003	0.81	0.0	0.04	15.72	0.00	2.083	16.26	0.10	10.0	89.6	0.3	-1.72	0.66	0.84	0.83	0.67	28142	3601	8	0	0	0	0	logfile
✔	6NYY	0552	2023-04-25	2019-02-12	3.0	2.29	2.98	3.1	0.007	0.90	0.0	0.05	10.08	0.01	0.952	5.97	0.05	5.9	94.1	0.0	-5.40	0.70	0.66	3.17	3.1	0.004	0.69	0.0	0.04	16.20	0.00	1.955	10.08	2.19	4.6	95.4	0.0	-0.51	1.37	0.76	0.74	2.52	19226	2894	16	0	13	0	0	logfile
✔	7SVW	25455	2023-04-23	2021-11-19	3.69	3.57	3.59	3.5	0.012	1.46	9.0	0.07	20.23	0.02	0.955	14.70	2.78	4.0	95.8	0.3	0.11	0.78	0.72	2.09	3.5	0.003	0.61	0.0	0.04	21.79	0.00	2.076	7.77	0.08	3.8	96.2	0.0	1.29	1.56	0.82	0.80	1.80	15830	1484	12	190	2	0	0	logfile
✔	6W6H	21555	2023-04-28	2020-03-16	3.3	3.65	—	3.5	0.004	0.77	0.0	0.04	15.48	0.00	0.962	9.97	1.39	9.9	89.9	0.2	-4.10	0.84	0.85	2.13	3.5	0.003	0.65	0.0	0.04	16.77	0.00	2.179	8.28	0.92	9.1	90.9	0.0	-1.23	1.21	0.83	0.87	1.92	28427	3615	13	0	38	0	0	logfile
✔	6QDV	4525	2023-04-24	2019-01-03	3.3	3.34	—	3.3	0.008	1.15	4.0	0.08	15.82	0.01	0.962	10.58	2.45	5.0	94.6	0.3	-3.15	0.53	0.72	2.12	3.3	0.003	0.66	0.0	0.04	16.97	0.00	1.913	14.47	0.47	4.6	95.4	0.1	0.41	1.45	0.51	0.66	1.86	121152	14611	60	348	18	0	0	logfile
✔	7CQK	30442	2023-04-21	2020-08-11	3.3	3.38	—	3.3	0.011	1.34	3.0	0.08	19.23	0.01	0.963	29.97	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	3.3	0.002	0.67	0.0	0.04	16.86	0.00	2.227	5.71	0.11	4.8	95.1	0.1	-1.06	2.02	0.71	0.86	2.18	8859	1116	7	0	2	0	0	logfile
✔	7UGo	26492	2023-04-27	2022-03-25	4.1	4.21	4.03	4.2	0.004	0.64	0.0	0.25	12.56	0.00	0.965	8.10	0.15	5.9	94.1	0.0	-3.57	0.77	0.82	—	4.2	0.004	0.69	0.0	0.05	13.15	0.00	2.178	9.80	0.07	8.4	91.6	0.0	-2.03	1.27	0.77	0.83	—	25590	3138	44	0	87	0	0	logfile
✔	5LMV	4083	2023-04-21	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.004	0.78	0.0	0.04	17.42	0.01	1.879	35.96	0.04	8.0	91.5	0.5	-1.87	2.22	0.78	0.77	—	59470	3124	30	1612	4	0	0	logfile
✔	7ADK	11729	2023-04-25	2020-09-15	2.8	3.03	2.81	3.0	0.014	2.03	21.0	0.12	15.24	0.02	0.997	1.77	0.43	9.4	90.6	0.0	-2.46	0.47	0.68	3.61	3.0	0.003	0.67	0.0	0.04	17.37	0.00	1.872	9.59	2.94	8.2	91.8	0.0	-1.87	2.91	0.56	0.76	2.72	20869	1317	2	0	0	0	10260	logfile
✔	7CQi	30441	2023-04-21	2020-08-11	3.2	3.33	—	3.3	0.012	1.51	5.0	0.09	16.83	0.01	0.997	19.68	13.06	10.7	88.6	0.7	-5.50	0.71	0.85	3.34	3.3	0.002	0.67	0.0	0.04	16.25	0.00	2.078	6.94	0.42	5.9	94.0	0.1	-1.69	2.28	0.71	0.86	2.51	8881	1117	6	0	2	0	0	logfile
✔	6FVX	4323	2023-04-21	2018-03-05	4.9	4.97	—	4.9	0.036	3.46	834.0	0.21	17.27	0.03	1.000	2.06	2.81	5.4	92.9	1.7	-2.42	0.52	0.59	—	4.9	0.004	0.85	1.0	0.05	14.48	0.01	1.862	19.81	0.08	4.3	95.5	0.2	-0.59	1.27	0.54	0.76	—	110471	14020	53	0	12	0	0	logfile
✔	7LBM	23255	2023-04-27	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.82	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.2	0.006	0.89	0.0	0.05	14.76	0.01	1.897	20.39	0.01	8.8	91.0	0.1	-1.14	1.50	0.61	0.59	—	129277	15887	68	128	19	0	0	logfile
✔	7S9U	24937	2023-04-25	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	18.26	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.007	0.70	0.0	0.04	17.45	0.01	2.035	10.21	0.69	8.8	91.1	0.1	-2.35	0.41	0.89	0.90	2.02	68620	2090	19	2436	0	0	0	logfile
✔	7RJC	24484	2023-04-28	2021-07-20	3.3	3.46	—	3.4	0.007	0.82	2.0	0.05	13.58	0.00	1.018	11.43	0.20	4.6	95.2	0.2	0.13	0.56	0.68	3.90	3.4	0.004	0.59	0.0	0.04	15.37	0.00	1.959	9.63	0.20	3.9	96.1	0.0	0.68	0.80	0.66	0.81	3.67	28373	1907	13	0	6	0	13664	logfile
✔	3JAC	6343	2023-04-23	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile

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