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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 2XEA | 1730 | 2023-09-30 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 7C9C | 30311 | 2023-09-28 | 2020-06-05 | 3.33 | 3.44 | — | 3.4 | 0.009 | 1.03 | 0.0 | 0.06 | 17.28 | 0.00 | 1.232 | 5.18 | 0.79 | 5.4 | 94.6 | 0.0 | -5.45 | 0.54 | 0.87 | 4.39 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 18.06 | 0.00 | 2.184 | 4.57 | 0.13 | 4.3 | 95.7 | 0.0 | -1.62 | 0.65 | 0.51 | 0.89 | 3.43 | 7452 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 8C03 | 16354 | 2023-09-27 | 2022-12-15 | 3.89 | 4.09 | 3.71 | 4.1 | 0.007 | 0.86 | 0.0 | 0.04 | 12.87 | 0.00 | 1.232 | 8.74 | 3.06 | 2.8 | 97.2 | 0.0 | 2.75 | 0.56 | 0.76 | 1.69 | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 16.14 | 0.00 | 2.172 | 14.22 | 0.56 | 2.1 | 97.9 | 0.0 | 2.25 | 1.50 | 0.56 | 0.78 | 1.78 | 3330 | 429 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DGZ | 30676 | 2023-09-30 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.43 | 3.0 | 0.07 | 12.24 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | 3.9 | 0.003 | 0.87 | 0.0 | 0.04 | 14.39 | 0.01 | 2.084 | 11.40 | 0.37 | 14.7 | 85.1 | 0.3 | -3.35 | 1.61 | 0.82 | 0.73 | 0.56 | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 6SiC | 10209 | 2023-09-30 | 2019-08-09 | 3.52 | 4.05 | 3.88 | 3.9 | 0.009 | 1.20 | 1.0 | 0.06 | 11.93 | 0.01 | 1.244 | 9.63 | 0.72 | 12.8 | 87.0 | 0.3 | -4.93 | 0.72 | 0.75 | 1.86 | 3.9 | 0.003 | 0.87 | 0.0 | 0.05 | 16.17 | 0.00 | 2.082 | 20.08 | 0.47 | 9.9 | 90.1 | 0.0 | -2.58 | 1.45 | 0.70 | 0.77 | 1.11 | 62079 | 7487 | 36 | 90 | 1 | 0 | 0 | logfile |
✔ | 7F55 | 31458 | 2023-09-28 | 2021-06-21 | 3.1 | 3.51 | — | 3.5 | 0.004 | 0.90 | 0.0 | 0.05 | 11.82 | 0.01 | 1.246 | 8.07 | 0.34 | 1.9 | 98.0 | 0.1 | 1.13 | 0.55 | 0.66 | 1.71 | 3.5 | 0.004 | 0.64 | 0.0 | 0.04 | 15.42 | 0.00 | 2.129 | 11.04 | 0.56 | 2.8 | 97.2 | 0.0 | 0.87 | 1.71 | 0.58 | 0.71 | 1.49 | 8088 | 1027 | 7 | 0 | 2 | 2 | 0 | logfile |
✔ | 7RYQ | 24745 | 2023-09-27 | 2021-08-25 | 4.6 | 6.00 | 4.65 | 4.8 | 0.005 | 1.08 | 0.0 | 0.06 | 15.48 | 0.01 | 1.251 | 39.25 | 6.25 | 10.7 | 88.9 | 0.4 | -1.51 | 0.85 | 0.76 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.04 | 14.17 | 0.01 | 2.162 | 16.62 | 0.00 | 7.6 | 92.4 | 0.0 | -0.37 | 1.23 | 0.85 | 0.77 | — | 4332 | 527 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X8R | 6710 | 2023-09-28 | 2017-03-03 | 3.7 | 3.88 | — | 3.8 | 0.012 | 1.32 | 8.0 | 0.06 | 14.80 | 0.01 | 1.255 | 12.20 | 1.03 | 12.1 | 86.8 | 1.1 | -4.16 | 0.77 | 0.74 | 1.22 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 16.00 | 0.01 | 2.056 | 18.80 | 1.03 | 11.7 | 87.9 | 0.4 | -2.23 | 1.33 | 0.81 | 0.83 | 1.08 | 55412 | 2969 | 26 | 1480 | 0 | 0 | 0 | logfile |
✔ | 8Bi0 | 16075 | 2023-09-29 | 2022-11-01 | 3.2 | 3.55 | 3.24 | 3.5 | 0.007 | 0.88 | 0.0 | 0.05 | 11.57 | 0.00 | 1.257 | 2.85 | 0.20 | 3.5 | 96.3 | 0.2 | 0.83 | 0.67 | 0.85 | 4.07 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 14.33 | 0.00 | 2.032 | 5.85 | 0.20 | 2.1 | 97.9 | 0.0 | 1.95 | 0.59 | 0.66 | 0.88 | 2.73 | 9198 | 1142 | 4 | 0 | 11 | 0 | 0 | logfile |
✔ | 6UZ3 | 20951 | 2023-09-29 | 2019-11-14 | 3.5 | 3.88 | — | 3.8 | 0.022 | 1.33 | 3.0 | 0.15 | 17.37 | 0.01 | 1.260 | 32.37 | 1.05 | 11.2 | 88.5 | 0.4 | -3.89 | 0.42 | 0.70 | 1.32 | 3.8 | 0.003 | 0.83 | 0.0 | 0.04 | 17.06 | 0.00 | 2.155 | 17.35 | 0.84 | 6.8 | 93.1 | 0.2 | -0.13 | 1.28 | 0.41 | 0.69 | 0.56 | 9446 | 1126 | 5 | 0 | 25 | 0 | 0 | logfile |
✔ | 7WBJ | 32401 | 2023-09-29 | 2021-12-16 | 3.42 | 3.69 | — | 3.7 | 0.004 | 0.61 | 0.0 | 0.05 | 14.59 | 0.00 | 1.264 | 12.09 | 0.21 | 4.9 | 95.1 | 0.0 | -1.06 | 0.65 | 0.74 | 2.02 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 16.16 | 0.00 | 2.102 | 11.35 | 0.31 | 3.9 | 96.1 | 0.0 | -0.38 | 0.35 | 0.64 | 0.76 | 1.23 | 8989 | 1146 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7A5J | 11645 | 2023-09-27 | 2020-08-21 | 3.1 | 2.70 | 3.04 | 3.0 | 0.009 | 0.99 | 0.0 | 0.05 | 17.11 | 0.01 | 1.265 | 4.18 | 0.84 | 5.2 | 94.7 | 0.2 | -4.41 | 0.63 | 0.73 | 2.66 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 17.72 | 0.00 | 1.932 | 10.50 | 0.41 | 4.2 | 95.8 | 0.0 | -0.65 | 1.38 | 0.65 | 0.79 | 2.49 | 106132 | 8540 | 70 | 1694 | 204 | 0 | 0 | logfile |
✔ | 7FJP | 31626 | 2023-09-28 | 2021-08-04 | 3.0 | 3.19 | — | 3.2 | 0.006 | 1.14 | 1.0 | 0.07 | 10.95 | 0.01 | 1.270 | 7.70 | 0.80 | 7.0 | 92.2 | 0.7 | -4.60 | 0.71 | 0.81 | 3.22 | 3.1 | 0.003 | 0.77 | 0.0 | 0.04 | 14.50 | 0.00 | 2.086 | 7.15 | 3.62 | 5.9 | 93.9 | 0.2 | -0.38 | 0.65 | 0.69 | 0.83 | 2.56 | 7239 | 983 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6TAU | 10428 | 2023-09-28 | 2019-10-30 | 3.7 | 2.83 | — | 3.7 | 0.006 | 0.99 | 0.0 | 0.06 | 15.44 | 0.01 | 1.283 | 13.22 | 0.23 | 6.5 | 93.5 | 0.0 | -4.23 | 0.55 | 0.75 | 1.32 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 17.43 | 0.00 | 2.202 | 7.23 | 0.79 | 6.0 | 94.0 | 0.0 | 0.47 | 0.65 | 0.56 | 0.76 | 1.46 | 8148 | 984 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GRS | 34214 | 2023-09-28 | 2022-09-02 | 3.3 | 3.91 | 3.48 | 3.8 | 0.016 | 1.94 | 6.0 | 0.13 | 26.29 | 0.02 | 1.285 | 16.08 | 44.03 | 21.3 | 72.9 | 5.8 | -5.46 | 0.61 | 0.72 | 1.86 | 3.8 | 0.005 | 0.87 | 0.0 | 0.04 | 18.43 | 0.01 | 2.197 | 16.07 | 0.71 | 12.7 | 86.9 | 0.5 | -1.34 | 1.96 | 0.46 | 0.76 | 1.61 | 5148 | 626 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6CEB | 7463 | 2023-09-30 | 2018-02-11 | 4.7 | 5.92 | — | 4.7 | 0.006 | 1.02 | 0.0 | 0.06 | 9.64 | 0.01 | 1.288 | 8.80 | 0.00 | 11.8 | 88.0 | 0.2 | -3.39 | 0.88 | 0.82 | — | 4.7 | 0.005 | 0.81 | 0.0 | 0.05 | 11.21 | 0.00 | 2.127 | 25.98 | 0.00 | 12.8 | 87.2 | 0.0 | -2.59 | 2.07 | 0.89 | 0.85 | — | 11722 | 1406 | 20 | 0 | 30 | 0 | 0 | logfile |
✔ | 5LMU | 4080 | 2023-09-28 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 21.34 | 0.02 | 1.289 | 21.15 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.78 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.04 | 17.76 | 0.01 | 1.776 | 29.46 | 1.59 | 8.7 | 90.7 | 0.6 | -1.67 | 0.88 | 0.76 | 0.84 | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |
✔ | 5LMT | 4079 | 2023-09-28 | 2016-08-01 | 4.15 | 4.33 | 4.20 | 4.2 | 0.008 | 1.43 | 21.0 | 0.12 | 20.76 | 0.02 | 1.290 | 18.78 | 22.35 | 11.9 | 84.8 | 3.3 | -2.73 | 0.77 | 0.76 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 16.67 | 0.01 | 1.811 | 29.47 | 0.00 | 9.0 | 90.6 | 0.4 | -1.66 | 0.91 | 0.80 | 0.83 | — | 55776 | 2622 | 31 | 1612 | 88 | 0 | 0 | logfile |
✔ | 7FFo | 31570 | 2023-09-28 | 2021-07-23 | 3.5 | 3.58 | — | 3.6 | 0.007 | 0.94 | 0.0 | 0.06 | 9.50 | 0.01 | 1.293 | 5.69 | 0.33 | 6.6 | 93.3 | 0.1 | -2.95 | 0.44 | 0.78 | 3.07 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.21 | 0.01 | 2.145 | 7.95 | 0.33 | 5.0 | 95.0 | 0.0 | -0.58 | 0.82 | 0.47 | 0.84 | 2.92 | 8255 | 1067 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZF1 | 14694 | 2023-09-29 | 2022-03-31 | 4.14 | 4.39 | 4.33 | 4.3 | 0.005 | 0.81 | 0.0 | 0.04 | 16.56 | 0.01 | 1.299 | 3.24 | 0.00 | 2.7 | 97.3 | 0.0 | 0.76 | 0.78 | 0.73 | — | 4.2 | 0.003 | 0.57 | 0.0 | 0.04 | 16.80 | 0.00 | 1.989 | 11.32 | 0.00 | 3.6 | 96.4 | 0.0 | 1.32 | 1.60 | 0.80 | 0.76 | — | 38889 | 2297 | 5 | 54 | 0 | 0 | 19431 | logfile |