Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	2XEA	1730	2023-09-30	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✔	7C9C	30311	2023-09-28	2020-06-05	3.33	3.44	—	3.4	0.009	1.03	0.0	0.06	17.28	0.00	1.232	5.18	0.79	5.4	94.6	0.0	-5.45	0.54	0.87	4.39	3.4	0.003	0.55	0.0	0.04	18.06	0.00	2.184	4.57	0.13	4.3	95.7	0.0	-1.62	0.65	0.51	0.89	3.43	7452	924	7	9	6	0	0	logfile
✔	8C03	16354	2023-09-27	2022-12-15	3.89	4.09	3.71	4.1	0.007	0.86	0.0	0.04	12.87	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.004	0.69	0.0	0.04	16.14	0.00	2.172	14.22	0.56	2.1	97.9	0.0	2.25	1.50	0.56	0.78	1.78	3330	429	1	0	1	0	0	logfile
✔	7DGZ	30676	2023-09-30	2020-11-12	3.8	4.12	—	4.0	0.008	1.43	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.87	0.0	0.04	14.39	0.01	2.084	11.40	0.37	14.7	85.1	0.3	-3.35	1.61	0.82	0.73	0.56	60921	7992	61	0	21	0	0	logfile
✔	6SiC	10209	2023-09-30	2019-08-09	3.52	4.05	3.88	3.9	0.009	1.20	1.0	0.06	11.93	0.01	1.244	9.63	0.72	12.8	87.0	0.3	-4.93	0.72	0.75	1.86	3.9	0.003	0.87	0.0	0.05	16.17	0.00	2.082	20.08	0.47	9.9	90.1	0.0	-2.58	1.45	0.70	0.77	1.11	62079	7487	36	90	1	0	0	logfile
✔	7F55	31458	2023-09-28	2021-06-21	3.1	3.51	—	3.5	0.004	0.90	0.0	0.05	11.82	0.01	1.246	8.07	0.34	1.9	98.0	0.1	1.13	0.55	0.66	1.71	3.5	0.004	0.64	0.0	0.04	15.42	0.00	2.129	11.04	0.56	2.8	97.2	0.0	0.87	1.71	0.58	0.71	1.49	8088	1027	7	0	2	2	0	logfile
✔	7RYQ	24745	2023-09-27	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.76	0.0	0.04	14.17	0.01	2.162	16.62	0.00	7.6	92.4	0.0	-0.37	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	5X8R	6710	2023-09-28	2017-03-03	3.7	3.88	—	3.8	0.012	1.32	8.0	0.06	14.80	0.01	1.255	12.20	1.03	12.1	86.8	1.1	-4.16	0.77	0.74	1.22	3.8	0.004	0.75	0.0	0.04	16.00	0.01	2.056	18.80	1.03	11.7	87.9	0.4	-2.23	1.33	0.81	0.83	1.08	55412	2969	26	1480	0	0	0	logfile
✔	8Bi0	16075	2023-09-29	2022-11-01	3.2	3.55	3.24	3.5	0.007	0.88	0.0	0.05	11.57	0.00	1.257	2.85	0.20	3.5	96.3	0.2	0.83	0.67	0.85	4.07	3.4	0.002	0.51	0.0	0.04	14.33	0.00	2.032	5.85	0.20	2.1	97.9	0.0	1.95	0.59	0.66	0.88	2.73	9198	1142	4	0	11	0	0	logfile
✔	6UZ3	20951	2023-09-29	2019-11-14	3.5	3.88	—	3.8	0.022	1.33	3.0	0.15	17.37	0.01	1.260	32.37	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.003	0.83	0.0	0.04	17.06	0.00	2.155	17.35	0.84	6.8	93.1	0.2	-0.13	1.28	0.41	0.69	0.56	9446	1126	5	0	25	0	0	logfile
✔	7WBJ	32401	2023-09-29	2021-12-16	3.42	3.69	—	3.7	0.004	0.61	0.0	0.05	14.59	0.00	1.264	12.09	0.21	4.9	95.1	0.0	-1.06	0.65	0.74	2.02	3.7	0.003	0.57	0.0	0.04	16.16	0.00	2.102	11.35	0.31	3.9	96.1	0.0	-0.38	0.35	0.64	0.76	1.23	8989	1146	6	0	0	0	0	logfile
✔	7A5J	11645	2023-09-27	2020-08-21	3.1	2.70	3.04	3.0	0.009	0.99	0.0	0.05	17.11	0.01	1.265	4.18	0.84	5.2	94.7	0.2	-4.41	0.63	0.73	2.66	2.9	0.003	0.62	0.0	0.04	17.72	0.00	1.932	10.50	0.41	4.2	95.8	0.0	-0.65	1.38	0.65	0.79	2.49	106132	8540	70	1694	204	0	0	logfile
✔	7FJP	31626	2023-09-28	2021-08-04	3.0	3.19	—	3.2	0.006	1.14	1.0	0.07	10.95	0.01	1.270	7.70	0.80	7.0	92.2	0.7	-4.60	0.71	0.81	3.22	3.1	0.003	0.77	0.0	0.04	14.50	0.00	2.086	7.15	3.62	5.9	93.9	0.2	-0.38	0.65	0.69	0.83	2.56	7239	983	1	0	4	0	0	logfile
✔	6TAU	10428	2023-09-28	2019-10-30	3.7	2.83	—	3.7	0.006	0.99	0.0	0.06	15.44	0.01	1.283	13.22	0.23	6.5	93.5	0.0	-4.23	0.55	0.75	1.32	3.0	0.003	0.63	0.0	0.04	17.43	0.00	2.202	7.23	0.79	6.0	94.0	0.0	0.47	0.65	0.56	0.76	1.46	8148	984	6	0	0	0	0	logfile
✔	8GRS	34214	2023-09-28	2022-09-02	3.3	3.91	3.48	3.8	0.016	1.94	6.0	0.13	26.29	0.02	1.285	16.08	44.03	21.3	72.9	5.8	-5.46	0.61	0.72	1.86	3.8	0.005	0.87	0.0	0.04	18.43	0.01	2.197	16.07	0.71	12.7	86.9	0.5	-1.34	1.96	0.46	0.76	1.61	5148	626	1	0	1	0	0	logfile
✔	6CEB	7463	2023-09-30	2018-02-11	4.7	5.92	—	4.7	0.006	1.02	0.0	0.06	9.64	0.01	1.288	8.80	0.00	11.8	88.0	0.2	-3.39	0.88	0.82	—	4.7	0.005	0.81	0.0	0.05	11.21	0.00	2.127	25.98	0.00	12.8	87.2	0.0	-2.59	2.07	0.89	0.85	—	11722	1406	20	0	30	0	0	logfile
✔	5LMU	4080	2023-09-28	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.34	0.02	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.78	—	4.0	0.006	0.86	0.0	0.04	17.76	0.01	1.776	29.46	1.59	8.7	90.7	0.6	-1.67	0.88	0.76	0.84	—	55195	2550	29	1612	82	0	0	logfile
✔	5LMT	4079	2023-09-28	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.76	0.02	1.290	18.78	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.005	0.79	0.0	0.04	16.67	0.01	1.811	29.47	0.00	9.0	90.6	0.4	-1.66	0.91	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	7FFo	31570	2023-09-28	2021-07-23	3.5	3.58	—	3.6	0.007	0.94	0.0	0.06	9.50	0.01	1.293	5.69	0.33	6.6	93.3	0.1	-2.95	0.44	0.78	3.07	3.6	0.003	0.66	0.0	0.04	14.21	0.01	2.145	7.95	0.33	5.0	95.0	0.0	-0.58	0.82	0.47	0.84	2.92	8255	1067	4	0	0	0	0	logfile
✔	7ZF1	14694	2023-09-29	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.56	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.57	0.0	0.04	16.80	0.00	1.989	11.32	0.00	3.6	96.4	0.0	1.32	1.60	0.80	0.76	—	38889	2297	5	54	0	0	19431	logfile

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