Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZH4	14721	2023-04-19	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.88	0.0	0.04	14.07	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.002	0.48	0.0	0.04	16.92	0.00	2.240	5.14	1.51	1.4	98.6	0.0	1.08	2.14	0.52	0.85	3.74	2957	362	4	0	2	39	0	logfile
✔	7QEU	13941	2023-04-19	2021-12-03	2.7	3.39	—	3.0	0.007	0.80	0.0	0.04	13.54	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.003	0.52	0.0	0.04	14.96	0.00	2.155	3.83	1.55	2.0	98.0	0.0	3.38	0.40	0.79	0.88	2.92	3002	359	6	0	6	7	0	logfile
✔	6UWL	20923	2023-04-20	2019-11-05	3.62	3.73	—	3.7	0.008	1.16	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.004	0.79	0.0	0.05	15.90	0.00	2.216	15.05	0.64	6.6	93.4	0.0	-0.23	0.56	0.66	0.81	1.61	3029	402	1	0	1	0	0	logfile
✔	7N5F	24188	2023-04-19	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	7K45	22660	2023-04-19	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.42	0.0	0.08	9.48	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.003	0.67	0.0	0.04	14.29	0.00	2.252	7.78	0.00	2.7	97.3	0.0	0.21	1.29	0.81	0.80	2.65	3038	419	4	0	2	0	0	logfile
✔	8CTK	26993	2023-04-19	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.69	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	3.9	0.004	0.60	0.0	0.04	15.16	0.00	2.247	8.41	0.63	3.8	96.2	0.0	-0.33	0.85	0.52	0.72	0.86	3042	376	2	0	0	0	0	logfile
✔	7QEo	13935	2023-04-19	2021-12-03	2.9	3.47	—	3.1	0.007	0.78	0.0	0.04	13.54	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.64	0.0	0.04	15.50	0.00	2.182	6.20	0.91	3.1	96.9	0.0	2.77	0.47	0.78	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	6X12	21986	2023-04-19	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.67	0.0	0.04	15.88	0.00	2.262	7.77	0.63	2.7	97.3	0.0	0.14	1.20	0.66	0.84	1.26	3059	407	1	0	1	0	0	logfile
✔	7FiJ	31599	2023-04-20	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	7E39	30977	2023-04-19	2021-02-08	3.7	3.11	—	2.9	0.005	0.77	0.0	0.05	14.37	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.63	0.0	0.05	15.71	0.00	2.190	10.48	0.00	5.2	94.8	0.0	-2.15	0.43	0.49	0.73	2.16	3074	414	4	0	1	0	0	logfile
✔	7QES	13939	2023-04-19	2021-12-03	2.6	3.37	—	3.0	0.006	0.86	0.0	0.04	13.93	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.64	0.0	0.04	15.49	0.00	2.170	4.71	1.22	3.4	96.6	0.0	2.50	1.24	0.78	0.87	2.88	3076	366	6	0	10	14	0	logfile
✔	6WYK	21967	2023-04-19	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.86	0.0	0.05	16.17	0.00	2.173	13.51	0.31	2.9	97.1	0.0	1.58	0.85	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	6X0U	21984	2023-04-19	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	5Lii	4053	2023-04-19	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	6M49	30074	2023-04-19	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.83	0.0	0.04	16.10	0.00	2.207	9.92	0.66	2.7	97.3	0.0	1.88	3.60	0.48	0.74	1.01	3098	420	3	0	1	0	0	logfile
✔	7TLY	25990	2023-04-19	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	9.97	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.62	0.0	0.04	13.83	0.00	2.186	3.71	2.81	3.3	96.7	0.0	-0.93	1.02	0.68	0.82	4.76	3105	408	4	0	4	0	0	logfile
✔	7E23	30950	2023-04-19	2021-02-04	3.3	3.62	—	3.6	0.004	0.83	0.0	0.05	14.45	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.004	0.75	0.0	0.05	16.24	0.01	2.162	14.04	0.30	14.2	85.5	0.3	-3.04	1.16	0.71	0.80	1.62	3133	403	4	0	1	0	0	logfile
✔	6X13	21987	2023-04-19	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.003	0.66	0.0	0.04	16.00	0.00	2.254	8.98	0.00	5.3	94.7	0.0	1.35	0.42	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile
✔	7TAS	25783	2023-04-19	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.50	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.69	0.0	0.04	14.00	0.00	2.248	5.95	0.00	3.7	96.3	0.0	-0.17	0.53	0.65	0.86	4.26	3147	417	4	0	3	0	0	logfile
✔	6XDC	22136	2023-04-19	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.003	0.60	0.0	0.04	15.30	0.00	2.197	9.57	2.59	3.7	96.3	0.0	0.98	1.70	0.45	0.69	3.50	3150	386	2	0	0	0	0	logfile

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