Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZU	24778	2022-12-11	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.005	0.52	0.0	0.03	15.91	0.00	2.234	8.11	1.75	0.0	100.0	0.0	4.99	0.49	0.80	0.81	1.62	2439	324	6	0	0	0	0	logfile
✔	6TJo	10512	2022-12-11	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.80	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.78	3.90	2439	321	3	0	0	0	0	logfile
✔	6VHA	21201	2022-12-11	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.75	0.0	0.05	13.16	0.00	2.339	14.02	0.00	9.8	90.2	0.0	-4.32	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	7RZS	24776	2022-12-11	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.43	0.0	0.04	15.95	0.00	2.318	4.66	0.71	0.0	100.0	0.0	5.82	1.18	0.79	0.82	1.27	2445	324	6	0	0	0	0	logfile
✔	7RZR	24775	2022-12-11	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZT	24777	2022-12-11	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.83	3.03	2451	324	6	0	0	0	0	logfile
✔	8Di5	27439	2022-12-11	2022-06-28	3.04	3.55	3.03	3.5	0.006	0.95	0.0	0.06	12.34	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.003	0.60	0.0	0.04	15.70	0.00	2.313	11.48	0.00	3.6	96.4	0.0	-1.34	0.54	0.65	0.80	3.80	2467	311	3	0	1	0	0	logfile
✔	7QKG	14041	2022-12-11	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.60	0.0	0.05	13.51	0.00	2.262	5.27	0.00	2.6	97.4	0.0	-1.55	1.17	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7QK6	14039	2022-12-11	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.57	0.0	0.05	15.85	0.00	2.385	4.06	0.69	5.8	94.2	0.0	-2.20	1.44	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	8DM0	27522	2022-12-11	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.00	0.0	0.06	12.66	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.004	0.67	0.0	0.05	15.20	0.00	2.120	9.92	0.37	5.2	94.8	0.0	-0.99	0.47	0.60	0.82	2.44	2480	314	3	0	1	0	0	logfile
✔	8DLY	27520	2022-12-11	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.93	0.0	0.06	12.34	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	3.6	0.005	0.76	0.0	0.05	16.13	0.00	2.288	13.83	3.00	4.5	95.5	0.0	-1.21	1.26	0.63	0.82	3.47	2483	314	3	0	1	0	0	logfile
✔	7V47	31702	2022-12-11	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.69	0.0	0.06	17.00	0.00	2.426	6.32	3.25	17.5	82.5	0.0	-4.25	0.34	0.43	0.79	5.70	2484	366	6	0	0	0	0	logfile
✔	7U0Z	26268	2022-12-11	2022-02-19	4.2	3.55	—	4.3	0.004	0.75	0.0	0.05	11.44	0.00	2.146	13.40	0.00	1.9	98.1	0.0	-2.57	0.41	0.71	—	4.3	0.002	0.65	0.0	0.05	12.19	0.00	2.255	10.24	0.00	4.0	96.0	0.0	-3.01	0.66	0.37	0.70	—	2487	330	3	0	0	0	0	logfile
✘	6YV1	10940	2022-12-18	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	6MLU	9146	2022-12-11	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.09	0.0	0.06	17.93	0.01	2.175	31.42	2.78	12.9	87.1	0.0	-2.60	3.41	0.44	0.77	—	2516	306	2	0	0	0	0	logfile
✔	7MJi	23874	2022-12-11	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.004	0.58	0.0	0.04	15.25	0.00	2.300	7.73	1.10	2.8	97.2	0.0	-0.01	1.44	0.57	0.85	4.21	2522	320	3	0	1	0	0	logfile
✔	7LXW	23577	2022-12-11	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.003	0.58	0.0	0.05	15.36	0.00	2.236	9.76	1.52	1.3	98.7	0.0	0.48	1.17	0.71	0.82	5.23	2524	317	5	0	5	0	0	logfile
✔	7UL4	26591	2022-12-11	2022-04-03	2.8	2.99	2.86	3.0	0.010	1.08	0.0	0.06	12.51	0.01	2.222	2.52	0.00	2.1	97.9	0.0	1.05	0.65	0.80	4.17	3.1	0.003	0.59	0.0	0.04	14.90	0.00	2.270	2.73	1.38	1.2	98.8	0.0	2.14	0.42	0.60	0.81	3.26	2524	351	3	0	1	4	0	logfile
✔	7Xo0	33332	2022-12-11	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.006	0.56	0.0	0.06	17.26	0.00	2.220	6.29	2.33	10.3	89.7	0.0	-3.10	0.38	0.47	0.88	7.05	2550	372	6	0	0	0	0	logfile
✔	7Xo2	33334	2022-12-11	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.005	0.59	0.0	0.06	19.12	0.00	2.295	5.52	2.33	9.2	90.8	0.0	-1.66	2.16	0.49	0.88	6.30	2550	372	6	0	0	0	0	logfile

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