Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VV4	32137	2023-09-27	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.57	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.76	0.0	0.04	17.20	0.00	2.114	10.81	2.50	2.3	97.4	0.4	2.12	0.55	0.58	0.76	0.88	2181	269	3	0	1	0	0	logfile
✔	7Y13	33555	2023-09-27	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.003	0.56	0.0	0.04	15.52	0.00	2.192	8.24	0.43	5.3	94.7	0.0	2.76	0.26	0.54	0.80	2.48	2199	264	1	0	7	2	0	logfile
✔	6PEo	20328	2023-09-27	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.006	0.64	0.0	0.06	15.71	0.00	2.448	8.63	0.89	9.7	90.3	0.0	-2.55	1.63	0.42	0.83	5.44	2205	320	5	0	0	0	0	logfile
✔	7B6E	12053	2023-09-27	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	2.4	0.004	0.99	0.0	0.05	14.87	0.00	2.111	27.61	0.00	11.3	88.7	0.0	-1.65	0.83	0.61	0.67	—	2205	269	1	0	0	0	0	logfile
✔	6ZRF	11380	2023-09-27	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.28	0.0	0.05	13.30	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.80	0.0	0.05	14.67	0.00	2.223	24.41	0.00	12.1	87.9	0.0	-5.90	0.52	0.69	0.82	3.16	2220	300	12	0	0	0	0	logfile
✔	7VV6	32139	2023-09-27	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.004	0.65	0.0	0.04	17.06	0.00	2.195	6.88	0.00	3.3	96.7	0.0	2.95	0.67	0.65	0.86	1.49	2227	271	1	0	2	0	0	logfile
✔	8iWE	35765	2023-09-27	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.8	0.002	0.59	0.0	0.04	15.63	0.00	2.185	4.36	1.42	5.5	94.5	0.0	0.49	1.00	0.60	0.84	1.73	2236	296	1	0	1	0	0	logfile
✔	8G3K	29700	2023-09-27	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	17.12	0.00	2.333	3.72	0.41	0.7	99.3	0.0	4.78	1.17	0.47	0.83	4.98	2244	285	2	0	0	0	0	logfile
✔	8iHK	35447	2023-09-27	2023-02-22	3.21	3.56	3.40	3.6	0.005	0.62	0.0	0.04	16.19	0.00	2.246	4.47	0.00	2.8	97.2	0.0	-0.99	0.51	0.79	1.56	3.7	0.002	0.58	0.0	0.04	16.94	0.00	2.306	5.59	0.42	3.6	96.4	0.0	-0.31	0.86	0.48	0.78	1.01	2253	283	2	0	1	0	0	logfile
✔	6L4S	0833	2023-09-27	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.005	0.79	0.0	0.05	15.37	0.00	2.237	13.28	0.88	10.1	89.9	0.0	-3.47	3.12	0.33	0.72	1.68	2268	330	6	0	0	0	0	logfile
✔	8JPF	36478	2023-09-27	2023-06-11	3.02	3.21	3.41	3.3	0.006	1.76	0.0	0.27	15.47	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.66	0.0	0.04	15.74	0.00	2.177	8.40	1.38	2.4	97.6	0.0	1.93	1.23	0.44	0.77	3.04	2269	304	3	0	1	0	0	logfile
✔	7QL2	14061	2023-09-27	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	8EA0	27970	2023-09-27	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.56	0.0	0.04	15.18	0.00	2.051	8.02	0.84	5.3	94.7	0.0	1.64	0.46	0.74	0.80	3.17	2286	285	1	0	2	0	0	logfile
✔	6QPi	4614	2023-09-27	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	7Q3U	13795	2023-09-27	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.92	0.0	0.04	18.42	0.01	2.192	28.03	0.00	14.8	85.2	0.0	-6.03	2.22	0.34	0.60	2.69	2355	355	5	0	0	0	0	logfile
✔	7YNT	33971	2023-09-27	2022-07-31	3.1	2.98	2.27	4.1	0.004	0.59	0.0	0.06	11.35	0.00	2.275	13.34	0.00	8.9	91.1	0.0	-5.55	0.42	0.70	4.17	4.1	0.003	0.65	0.0	0.06	13.89	0.00	2.253	12.32	0.00	10.7	89.3	0.0	-4.65	0.46	0.36	0.63	3.65	2364	348	6	0	0	0	0	logfile
✔	7V4D	31708	2023-09-27	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.003	0.67	0.0	0.05	13.01	0.00	2.208	8.66	0.00	9.2	90.8	0.0	-3.61	1.19	0.42	0.80	4.19	2376	348	6	0	0	0	0	logfile
✔	7M62	23687	2023-09-27	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.2	0.006	1.03	0.0	0.06	15.73	0.00	2.059	31.10	2.22	26.0	74.0	0.0	-4.94	2.76	0.57	0.68	2.84	2380	320	10	0	10	0	0	logfile
✔	7T2E	25611	2023-09-27	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7RZQ	24774	2023-09-27	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile

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