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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VV4 | 32137 | 2023-09-27 | 2021-11-04 | 2.97 | 3.66 | — | 3.7 | 0.007 | 1.20 | 2.0 | 0.09 | 14.57 | 0.01 | 1.600 | 15.98 | 3.75 | 4.2 | 95.8 | 0.0 | -0.53 | 0.64 | 0.78 | 2.05 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 17.20 | 0.00 | 2.114 | 10.81 | 2.50 | 2.3 | 97.4 | 0.4 | 2.12 | 0.55 | 0.58 | 0.76 | 0.88 | 2181 | 269 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Y13 | 33555 | 2023-09-27 | 2022-06-06 | 3.1 | 3.20 | 3.10 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 13.19 | 0.01 | 2.195 | 8.24 | 0.00 | 6.1 | 93.9 | 0.0 | 1.88 | 0.59 | 0.80 | 3.01 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.52 | 0.00 | 2.192 | 8.24 | 0.43 | 5.3 | 94.7 | 0.0 | 2.76 | 0.26 | 0.54 | 0.80 | 2.48 | 2199 | 264 | 1 | 0 | 7 | 2 | 0 | logfile |
✔ | 6PEo | 20328 | 2023-09-27 | 2019-06-20 | 3.3 | 3.52 | — | 3.6 | 0.003 | 0.54 | 0.0 | 0.05 | 13.06 | 0.01 | 2.492 | 10.62 | 0.00 | 9.7 | 90.3 | 0.0 | -1.64 | 0.41 | 0.82 | 3.20 | 3.6 | 0.006 | 0.64 | 0.0 | 0.06 | 15.71 | 0.00 | 2.448 | 8.63 | 0.89 | 9.7 | 90.3 | 0.0 | -2.55 | 1.63 | 0.42 | 0.83 | 5.44 | 2205 | 320 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B6E | 12053 | 2023-09-27 | 2020-12-07 | 4.5 | 2.79 | — | 5.1 | 0.005 | 1.03 | 0.0 | 0.05 | 15.04 | 0.01 | 2.129 | 36.05 | 0.00 | 10.9 | 89.1 | 0.0 | -3.88 | 0.62 | 0.66 | — | 2.4 | 0.004 | 0.99 | 0.0 | 0.05 | 14.87 | 0.00 | 2.111 | 27.61 | 0.00 | 11.3 | 88.7 | 0.0 | -1.65 | 0.83 | 0.61 | 0.67 | — | 2205 | 269 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRF | 11380 | 2023-09-27 | 2020-07-13 | 3.6 | 3.66 | 1.96 | 3.6 | 0.014 | 1.28 | 0.0 | 0.05 | 13.30 | 0.00 | 1.993 | 42.14 | 0.00 | 4.9 | 95.1 | 0.0 | -6.22 | 0.67 | 0.79 | 1.84 | 3.7 | 0.005 | 0.80 | 0.0 | 0.05 | 14.67 | 0.00 | 2.223 | 24.41 | 0.00 | 12.1 | 87.9 | 0.0 | -5.90 | 0.52 | 0.69 | 0.82 | 3.16 | 2220 | 300 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VV6 | 32139 | 2023-09-27 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.38 | 0.0 | 0.07 | 19.04 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 17.06 | 0.00 | 2.195 | 6.88 | 0.00 | 3.3 | 96.7 | 0.0 | 2.95 | 0.67 | 0.65 | 0.86 | 1.49 | 2227 | 271 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8iWE | 35765 | 2023-09-27 | 2023-03-29 | 3.4 | 3.95 | 3.24 | 3.8 | 0.004 | 0.93 | 1.0 | 0.07 | 16.00 | 0.00 | 2.321 | 10.10 | 2.84 | 5.9 | 94.1 | 0.0 | -0.50 | 0.58 | 0.79 | 2.37 | 3.8 | 0.002 | 0.59 | 0.0 | 0.04 | 15.63 | 0.00 | 2.185 | 4.36 | 1.42 | 5.5 | 94.5 | 0.0 | 0.49 | 1.00 | 0.60 | 0.84 | 1.73 | 2236 | 296 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8G3K | 29700 | 2023-09-27 | 2023-02-08 | 2.2 | 2.34 | 2.21 | 2.3 | 0.002 | 0.36 | 0.0 | 0.03 | 9.98 | 0.00 | 2.348 | 3.50 | 0.00 | 0.7 | 99.3 | 0.0 | 5.07 | 0.46 | 0.82 | 4.79 | 2.3 | 0.002 | 0.47 | 0.0 | 0.03 | 17.12 | 0.00 | 2.333 | 3.72 | 0.41 | 0.7 | 99.3 | 0.0 | 4.78 | 1.17 | 0.47 | 0.83 | 4.98 | 2244 | 285 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iHK | 35447 | 2023-09-27 | 2023-02-22 | 3.21 | 3.56 | 3.40 | 3.6 | 0.005 | 0.62 | 0.0 | 0.04 | 16.19 | 0.00 | 2.246 | 4.47 | 0.00 | 2.8 | 97.2 | 0.0 | -0.99 | 0.51 | 0.79 | 1.56 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 16.94 | 0.00 | 2.306 | 5.59 | 0.42 | 3.6 | 96.4 | 0.0 | -0.31 | 0.86 | 0.48 | 0.78 | 1.01 | 2253 | 283 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6L4S | 0833 | 2023-09-27 | 2019-10-21 | 3.37 | 3.47 | — | 4.0 | 0.014 | 1.36 | 0.0 | 0.09 | 10.28 | 0.01 | 2.408 | 7.28 | 0.00 | 5.7 | 94.3 | 0.0 | -3.73 | 0.28 | 0.67 | 4.12 | 4.1 | 0.005 | 0.79 | 0.0 | 0.05 | 15.37 | 0.00 | 2.237 | 13.28 | 0.88 | 10.1 | 89.9 | 0.0 | -3.47 | 3.12 | 0.33 | 0.72 | 1.68 | 2268 | 330 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JPF | 36478 | 2023-09-27 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.006 | 1.76 | 0.0 | 0.27 | 15.47 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.74 | 0.00 | 2.177 | 8.40 | 1.38 | 2.4 | 97.6 | 0.0 | 1.93 | 1.23 | 0.44 | 0.77 | 3.04 | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QL2 | 14061 | 2023-09-27 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.5 | 0.003 | 0.58 | 0.0 | 0.05 | 12.52 | 0.00 | 2.497 | 2.63 | 1.48 | 8.3 | 91.7 | 0.0 | -3.27 | 1.13 | 0.22 | 0.72 | 4.36 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 8EA0 | 27970 | 2023-09-27 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 12.24 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | 1.9 | 0.003 | 0.56 | 0.0 | 0.04 | 15.18 | 0.00 | 2.051 | 8.02 | 0.84 | 5.3 | 94.7 | 0.0 | 1.64 | 0.46 | 0.74 | 0.80 | 3.17 | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2023-09-27 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 5.28 | 0.00 | 2.448 | 1.19 | 0.00 | 2.6 | 97.4 | 0.0 | 1.11 | 0.59 | 0.41 | 0.64 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q3U | 13795 | 2023-09-27 | 2021-10-28 | 3.7 | 3.43 | 3.48 | 4.1 | 0.005 | 1.17 | 0.0 | 0.05 | 16.84 | 0.01 | 2.120 | 36.48 | 0.00 | 10.7 | 89.3 | 0.0 | -5.79 | 0.23 | 0.47 | 0.88 | 4.0 | 0.004 | 0.92 | 0.0 | 0.04 | 18.42 | 0.01 | 2.192 | 28.03 | 0.00 | 14.8 | 85.2 | 0.0 | -6.03 | 2.22 | 0.34 | 0.60 | 2.69 | 2355 | 355 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNT | 33971 | 2023-09-27 | 2022-07-31 | 3.1 | 2.98 | 2.27 | 4.1 | 0.004 | 0.59 | 0.0 | 0.06 | 11.35 | 0.00 | 2.275 | 13.34 | 0.00 | 8.9 | 91.1 | 0.0 | -5.55 | 0.42 | 0.70 | 4.17 | 4.1 | 0.003 | 0.65 | 0.0 | 0.06 | 13.89 | 0.00 | 2.253 | 12.32 | 0.00 | 10.7 | 89.3 | 0.0 | -4.65 | 0.46 | 0.36 | 0.63 | 3.65 | 2364 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V4D | 31708 | 2023-09-27 | 2021-08-12 | 3.5 | 3.38 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.05 | 11.89 | 0.00 | 2.234 | 14.44 | 0.00 | 7.1 | 92.9 | 0.0 | -5.68 | 0.41 | 0.80 | 4.67 | 4.1 | 0.003 | 0.67 | 0.0 | 0.05 | 13.01 | 0.00 | 2.208 | 8.66 | 0.00 | 9.2 | 90.8 | 0.0 | -3.61 | 1.19 | 0.42 | 0.80 | 4.19 | 2376 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2023-09-27 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.006 | 1.03 | 0.0 | 0.06 | 15.73 | 0.00 | 2.059 | 31.10 | 2.22 | 26.0 | 74.0 | 0.0 | -4.94 | 2.76 | 0.57 | 0.68 | 2.84 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2023-09-27 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZQ | 24774 | 2023-09-27 | 2021-08-27 | 2.09 | 2.26 | — | 2.7 | 0.006 | 0.40 | 0.0 | 0.03 | 14.23 | 0.00 | 2.339 | 4.69 | 0.00 | 1.9 | 98.1 | 0.0 | 2.15 | 0.78 | 0.79 | 1.56 | 2.0 | 0.003 | 0.31 | 0.0 | 0.03 | 15.07 | 0.00 | 2.343 | 5.71 | 0.00 | 0.0 | 100.0 | 0.0 | 5.84 | 0.30 | 0.82 | 0.82 | 2.01 | 2421 | 322 | 6 | 0 | 0 | 0 | 0 | logfile |