Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o6B	12737	2022-12-13	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.55	0.0	0.04	14.05	0.00	2.012	9.95	0.38	4.0	96.0	0.0	0.60	1.16	0.76	0.70	0.37	14200	879	1	0	0	0	7040	logfile
✔	7XiZ	33213	2022-12-11	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.10	0.0	0.06	18.15	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.82	0.0	0.05	18.16	0.01	2.215	14.34	0.43	16.6	82.6	0.8	-3.64	1.53	0.37	0.73	1.52	2161	267	1	0	2	0	0	logfile
✔	7KU5	23034	2022-12-11	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.73	0.0	0.04	16.42	0.01	2.247	10.16	0.00	10.5	89.5	0.0	-1.80	1.30	0.25	0.68	2.01	750	88	1	0	4	0	0	logfile
✔	7TX6	26155	2022-12-11	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	12.44	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.003	0.73	1.0	0.05	15.32	0.00	2.358	7.01	0.00	2.8	97.2	0.0	1.51	1.61	0.53	0.77	2.29	3169	398	1	0	2	0	0	logfile
✔	7SYF	25524	2022-12-12	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.75	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.004	0.81	0.0	0.05	13.95	0.00	2.124	19.36	0.00	3.8	96.2	0.0	0.57	1.18	0.69	0.64	—	11108	1391	1	0	0	0	0	logfile
✔	7W01	32233	2022-12-12	2021-11-17	3.3	3.43	—	3.4	0.011	1.10	1.0	0.06	16.08	0.01	1.717	10.01	0.60	13.3	85.9	0.8	-4.55	0.68	0.86	2.97	3.4	0.002	0.68	0.0	0.04	17.15	0.00	2.151	6.53	0.60	9.2	90.6	0.2	-2.20	1.58	0.66	0.87	1.85	12724	1598	1	0	7	0	0	logfile
✔	7N9Q	24259	2022-12-11	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.01	0.0	0.00	5.01	0.00	2.577	6.97	0.00	13.1	86.1	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7V0X	26952	2022-12-11	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	7.75	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.003	0.54	0.0	0.04	19.08	0.00	2.178	8.99	5.05	4.6	95.4	0.0	1.72	0.46	0.60	0.88	3.39	2818	375	1	0	0	0	0	logfile
✔	7S8U	24922	2022-12-11	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.20	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.004	0.86	0.0	0.05	16.45	0.01	2.081	17.98	1.93	8.4	91.1	0.5	-0.47	1.40	0.51	0.62	0.54	5210	667	1	0	0	0	0	logfile
✔	7RXH	24731	2022-12-11	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	19.48	0.00	2.211	14.01	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.004	0.47	0.0	0.04	15.58	0.00	1.993	13.56	0.74	3.2	96.8	0.0	2.12	1.27	0.60	0.91	4.06	5631	626	1	0	18	24	48	logfile
✔	8GUD	34273	2022-12-11	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.80	0.01	2.116	20.53	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.65	0.0	0.04	17.30	0.00	2.157	17.22	2.51	4.9	95.1	0.0	-1.29	1.14	0.49	0.57	1.10	6814	835	1	0	1	0	0	logfile
✔	7M5Y	23685	2022-12-13	2021-03-25	3.0	4.01	—	3.4	0.007	1.20	0.0	0.24	14.19	0.01	2.021	4.64	0.00	5.1	94.9	0.0	0.03	0.69	0.80	2.30	3.4	0.002	0.55	0.0	0.04	14.18	0.00	1.919	7.30	0.38	3.4	96.6	0.0	1.06	1.02	0.68	0.82	2.48	15447	1000	1	0	24	8	7534	logfile
✔	8DQK	27655	2022-12-11	2022-07-19	4.0	4.35	4.38	3.9	0.003	0.72	0.0	0.05	12.56	0.01	2.134	12.45	0.00	2.6	97.2	0.1	0.14	0.55	0.56	—	4.1	0.003	0.74	0.0	0.04	15.32	0.01	2.111	19.36	0.79	4.1	95.9	0.0	0.22	1.56	0.60	0.69	—	5891	733	1	0	0	0	0	logfile
✔	7ZFW	14704	2022-12-13	2022-04-01	3.8	4.62	3.46	3.0	0.007	0.80	0.0	0.05	17.76	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.88	0.0	0.04	20.35	0.01	1.947	37.81	0.00	0.0	0.0	0.0	—	2.54	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7WLi	32584	2022-12-12	2022-01-13	3.3	3.59	—	3.6	0.012	1.01	1.0	0.06	14.87	0.01	1.888	15.00	0.20	7.3	92.5	0.2	-0.17	0.59	0.78	2.16	3.6	0.003	0.67	0.0	0.04	16.11	0.00	2.158	13.24	0.30	5.8	94.2	0.0	0.12	0.53	0.59	0.79	1.81	9493	1135	1	0	21	0	0	logfile
✔	7Y13	33555	2022-12-11	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.46	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.004	0.58	0.0	0.04	15.64	0.01	2.188	8.24	0.86	5.3	94.7	0.0	2.59	0.26	0.54	0.80	2.60	2199	264	1	0	7	2	0	logfile
✔	7Q5Z	13847	2022-12-12	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.37	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.003	0.67	0.0	0.04	14.18	0.00	2.157	14.76	0.34	5.9	93.9	0.2	-0.77	1.17	0.81	0.73	1.37	10489	1344	1	0	0	0	0	logfile
✔	7oiM	12932	2022-12-19	2021-05-11	4.0	4.68	3.92	3.7	0.006	1.32	7.0	0.07	13.98	0.01	2.069	5.22	0.05	8.1	91.7	0.2	-3.63	0.81	0.66	—	3.8	0.003	0.77	0.0	0.04	15.21	0.00	2.040	13.53	0.28	7.2	92.7	0.0	-0.37	0.66	0.90	0.81	—	35597	4426	1	0	6	0	0	logfile
✔	5LiJ	4054	2022-12-11	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.83	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6oUC	20202	2022-12-11	2019-05-04	2.8	3.00	—	3.0	0.008	1.15	1.0	0.08	9.03	0.01	2.131	6.96	0.00	3.5	96.5	0.0	-2.32	0.62	0.88	5.44	3.0	0.004	0.63	0.0	0.05	14.84	0.01	2.172	3.88	1.68	3.5	96.5	0.0	-0.43	1.18	0.65	0.90	3.76	3899	483	1	0	1	124	0	logfile

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