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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7o6B | 12737 | 2022-12-13 | 2021-04-09 | 3.88 | 4.21 | 4.15 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 11.54 | 0.01 | 2.128 | 6.00 | 0.38 | 4.3 | 95.7 | 0.0 | -0.87 | 0.75 | 0.67 | 0.37 | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 14.05 | 0.00 | 2.012 | 9.95 | 0.38 | 4.0 | 96.0 | 0.0 | 0.60 | 1.16 | 0.76 | 0.70 | 0.37 | 14200 | 879 | 1 | 0 | 0 | 0 | 7040 | logfile |
✔ | 7XiZ | 33213 | 2022-12-11 | 2022-04-14 | 3.74 | 3.27 | 3.81 | 3.1 | 0.013 | 1.10 | 0.0 | 0.06 | 18.15 | 0.01 | 2.386 | 4.94 | 0.00 | 12.8 | 86.4 | 0.8 | -3.37 | 0.35 | 0.71 | 1.78 | 3.1 | 0.004 | 0.82 | 0.0 | 0.05 | 18.16 | 0.01 | 2.215 | 14.34 | 0.43 | 16.6 | 82.6 | 0.8 | -3.64 | 1.53 | 0.37 | 0.73 | 1.52 | 2161 | 267 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7KU5 | 23034 | 2022-12-11 | 2020-11-24 | 3.76 | 3.63 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 14.85 | 0.01 | 2.420 | 3.63 | 0.00 | 12.8 | 87.2 | 0.0 | -5.41 | 0.23 | 0.65 | -0.48 | 3.9 | 0.002 | 0.73 | 0.0 | 0.04 | 16.42 | 0.01 | 2.247 | 10.16 | 0.00 | 10.5 | 89.5 | 0.0 | -1.80 | 1.30 | 0.25 | 0.68 | 2.01 | 750 | 88 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TX6 | 26155 | 2022-12-11 | 2022-02-07 | 3.3 | 3.60 | 3.29 | 3.5 | 0.008 | 0.90 | 1.0 | 0.05 | 12.44 | 0.01 | 2.327 | 6.69 | 0.62 | 3.0 | 97.0 | 0.0 | 2.51 | 0.53 | 0.76 | 2.79 | 3.6 | 0.003 | 0.73 | 1.0 | 0.05 | 15.32 | 0.00 | 2.358 | 7.01 | 0.00 | 2.8 | 97.2 | 0.0 | 1.51 | 1.61 | 0.53 | 0.77 | 2.29 | 3169 | 398 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SYF | 25524 | 2022-12-12 | 2021-11-24 | 4.2 | 3.03 | 3.92 | 2.2 | 0.013 | 1.86 | 8.0 | 0.10 | 14.32 | 0.01 | 2.460 | 1.75 | 1.31 | 3.9 | 96.1 | 0.0 | -1.56 | 0.67 | 0.61 | — | 2.2 | 0.004 | 0.81 | 0.0 | 0.05 | 13.95 | 0.00 | 2.124 | 19.36 | 0.00 | 3.8 | 96.2 | 0.0 | 0.57 | 1.18 | 0.69 | 0.64 | — | 11108 | 1391 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W01 | 32233 | 2022-12-12 | 2021-11-17 | 3.3 | 3.43 | — | 3.4 | 0.011 | 1.10 | 1.0 | 0.06 | 16.08 | 0.01 | 1.717 | 10.01 | 0.60 | 13.3 | 85.9 | 0.8 | -4.55 | 0.68 | 0.86 | 2.97 | 3.4 | 0.002 | 0.68 | 0.0 | 0.04 | 17.15 | 0.00 | 2.151 | 6.53 | 0.60 | 9.2 | 90.6 | 0.2 | -2.20 | 1.58 | 0.66 | 0.87 | 1.85 | 12724 | 1598 | 1 | 0 | 7 | 0 | 0 | logfile |
✔ | 7N9Q | 24259 | 2022-12-11 | 2021-06-18 | 4.6 | 4.92 | — | 2.3 | 0.002 | 0.88 | 0.0 | 0.00 | 5.65 | 0.00 | 2.600 | 0.00 | 0.00 | 8.9 | 90.3 | 0.8 | -1.59 | 0.79 | 0.69 | — | 2.5 | 0.003 | 1.01 | 0.0 | 0.00 | 5.01 | 0.00 | 2.577 | 6.97 | 0.00 | 13.1 | 86.1 | 0.9 | -4.51 | 2.40 | 0.85 | 0.81 | — | 6945 | 2315 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V0X | 26952 | 2022-12-11 | 2022-05-11 | 3.0 | 2.83 | 2.92 | 2.9 | 0.002 | 0.63 | 0.0 | 0.04 | 19.06 | 0.01 | 2.211 | 7.75 | 5.05 | 4.0 | 96.0 | 0.0 | 0.72 | 0.61 | 0.88 | 3.78 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 19.08 | 0.00 | 2.178 | 8.99 | 5.05 | 4.6 | 95.4 | 0.0 | 1.72 | 0.46 | 0.60 | 0.88 | 3.39 | 2818 | 375 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2022-12-11 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.20 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.45 | 0.01 | 2.081 | 17.98 | 1.93 | 8.4 | 91.1 | 0.5 | -0.47 | 1.40 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RXH | 24731 | 2022-12-11 | 2021-08-23 | 2.3 | 3.07 | — | 2.8 | 0.009 | 1.40 | 0.0 | 0.05 | 19.48 | 0.00 | 2.211 | 14.01 | 0.56 | 2.7 | 97.1 | 0.2 | -0.87 | 0.63 | 0.78 | 3.25 | 2.8 | 0.004 | 0.47 | 0.0 | 0.04 | 15.58 | 0.00 | 1.993 | 13.56 | 0.74 | 3.2 | 96.8 | 0.0 | 2.12 | 1.27 | 0.60 | 0.91 | 4.06 | 5631 | 626 | 1 | 0 | 18 | 24 | 48 | logfile |
✔ | 8GUD | 34273 | 2022-12-11 | 2022-09-11 | 2.62 | 2.98 | 2.83 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 14.80 | 0.01 | 2.116 | 20.53 | 0.00 | 6.0 | 94.0 | 0.0 | -2.12 | 0.52 | 0.56 | 1.45 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 17.30 | 0.00 | 2.157 | 17.22 | 2.51 | 4.9 | 95.1 | 0.0 | -1.29 | 1.14 | 0.49 | 0.57 | 1.10 | 6814 | 835 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7M5Y | 23685 | 2022-12-13 | 2021-03-25 | 3.0 | 4.01 | — | 3.4 | 0.007 | 1.20 | 0.0 | 0.24 | 14.19 | 0.01 | 2.021 | 4.64 | 0.00 | 5.1 | 94.9 | 0.0 | 0.03 | 0.69 | 0.80 | 2.30 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 14.18 | 0.00 | 1.919 | 7.30 | 0.38 | 3.4 | 96.6 | 0.0 | 1.06 | 1.02 | 0.68 | 0.82 | 2.48 | 15447 | 1000 | 1 | 0 | 24 | 8 | 7534 | logfile |
✔ | 8DQK | 27655 | 2022-12-11 | 2022-07-19 | 4.0 | 4.35 | 4.38 | 3.9 | 0.003 | 0.72 | 0.0 | 0.05 | 12.56 | 0.01 | 2.134 | 12.45 | 0.00 | 2.6 | 97.2 | 0.1 | 0.14 | 0.55 | 0.56 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 15.32 | 0.01 | 2.111 | 19.36 | 0.79 | 4.1 | 95.9 | 0.0 | 0.22 | 1.56 | 0.60 | 0.69 | — | 5891 | 733 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZFW | 14704 | 2022-12-13 | 2022-04-01 | 3.8 | 4.62 | 3.46 | 3.0 | 0.007 | 0.80 | 0.0 | 0.05 | 17.76 | 0.03 | 2.266 | 2.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.81 | — | 3.0 | 0.009 | 0.88 | 0.0 | 0.04 | 20.35 | 0.01 | 1.947 | 37.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.54 | 0.33 | 0.85 | — | 13188 | 0 | 1 | 615 | 0 | 0 | 0 | logfile |
✔ | 7WLi | 32584 | 2022-12-12 | 2022-01-13 | 3.3 | 3.59 | — | 3.6 | 0.012 | 1.01 | 1.0 | 0.06 | 14.87 | 0.01 | 1.888 | 15.00 | 0.20 | 7.3 | 92.5 | 0.2 | -0.17 | 0.59 | 0.78 | 2.16 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 16.11 | 0.00 | 2.158 | 13.24 | 0.30 | 5.8 | 94.2 | 0.0 | 0.12 | 0.53 | 0.59 | 0.79 | 1.81 | 9493 | 1135 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 7Y13 | 33555 | 2022-12-11 | 2022-06-06 | 3.1 | 3.20 | 3.10 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 13.19 | 0.01 | 2.195 | 8.46 | 0.00 | 6.1 | 93.9 | 0.0 | 1.88 | 0.59 | 0.80 | 3.01 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 15.64 | 0.01 | 2.188 | 8.24 | 0.86 | 5.3 | 94.7 | 0.0 | 2.59 | 0.26 | 0.54 | 0.80 | 2.60 | 2199 | 264 | 1 | 0 | 7 | 2 | 0 | logfile |
✔ | 7Q5Z | 13847 | 2022-12-12 | 2021-11-05 | 3.25 | 3.74 | — | 3.3 | 0.005 | 1.00 | 1.0 | 0.06 | 12.76 | 0.01 | 1.750 | 5.37 | 0.09 | 6.2 | 93.6 | 0.2 | -2.07 | 0.80 | 0.69 | 1.18 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 14.18 | 0.00 | 2.157 | 14.76 | 0.34 | 5.9 | 93.9 | 0.2 | -0.77 | 1.17 | 0.81 | 0.73 | 1.37 | 10489 | 1344 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oiM | 12932 | 2022-12-19 | 2021-05-11 | 4.0 | 4.68 | 3.92 | 3.7 | 0.006 | 1.32 | 7.0 | 0.07 | 13.98 | 0.01 | 2.069 | 5.22 | 0.05 | 8.1 | 91.7 | 0.2 | -3.63 | 0.81 | 0.66 | — | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 15.21 | 0.00 | 2.040 | 13.53 | 0.28 | 7.2 | 92.7 | 0.0 | -0.37 | 0.66 | 0.90 | 0.81 | — | 35597 | 4426 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2022-12-11 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.004 | 1.12 | 0.0 | 0.04 | 9.66 | 0.00 | 2.166 | 11.83 | 0.00 | 32.0 | 68.0 | 0.0 | -5.62 | 1.49 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oUC | 20202 | 2022-12-11 | 2019-05-04 | 2.8 | 3.00 | — | 3.0 | 0.008 | 1.15 | 1.0 | 0.08 | 9.03 | 0.01 | 2.131 | 6.96 | 0.00 | 3.5 | 96.5 | 0.0 | -2.32 | 0.62 | 0.88 | 5.44 | 3.0 | 0.004 | 0.63 | 0.0 | 0.05 | 14.84 | 0.01 | 2.172 | 3.88 | 1.68 | 3.5 | 96.5 | 0.0 | -0.43 | 1.18 | 0.65 | 0.90 | 3.76 | 3899 | 483 | 1 | 0 | 1 | 124 | 0 | logfile |