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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6CU7 | 7618 | 2022-12-11 | 2018-03-23 | 3.5 | 3.63 | — | 4.3 | 0.007 | 0.99 | 0.0 | 0.07 | 9.61 | 0.00 | 2.346 | 4.58 | 2.38 | 15.5 | 84.5 | 0.0 | -4.74 | 0.38 | 0.72 | 2.52 | 4.3 | 0.004 | 0.67 | 0.0 | 0.05 | 14.08 | 0.00 | 2.215 | 17.37 | 0.71 | 13.1 | 86.9 | 0.0 | -4.59 | 1.76 | 0.38 | 0.72 | 1.68 | 4140 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLT | 4276 | 2022-12-11 | 2018-01-28 | 3.42 | 3.32 | — | 3.5 | 0.014 | 1.15 | 0.0 | 0.06 | 8.31 | 0.00 | 2.330 | 9.03 | 0.00 | 14.3 | 85.7 | 0.0 | -5.36 | 0.44 | 0.74 | 2.91 | 3.5 | 0.005 | 0.67 | 0.0 | 0.05 | 10.57 | 0.00 | 2.300 | 12.13 | 0.00 | 20.7 | 79.3 | 0.0 | -5.03 | 2.04 | 0.41 | 0.79 | 4.07 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 6E9E | 9013 | 2022-12-11 | 2018-08-01 | 3.4 | 3.44 | 3.75 | 3.5 | 0.006 | 0.73 | 0.0 | 0.04 | 10.72 | 0.00 | 2.037 | 3.87 | 0.26 | 4.1 | 95.9 | 0.0 | -4.95 | 0.77 | 0.82 | 4.40 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.04 | 0.00 | 2.222 | 5.14 | 0.39 | 3.1 | 96.9 | 0.0 | 0.41 | 1.09 | 0.78 | 0.90 | 3.59 | 8163 | 863 | 3 | 51 | 1 | 0 | 0 | logfile |
✔ | 5YRN | 6842 | 2022-12-12 | 2017-11-09 | 4.1 | 3.09 | 3.51 | 6.7 | 0.007 | 1.00 | 0.0 | 0.05 | 10.65 | 0.00 | 2.371 | 8.18 | 0.00 | 4.7 | 95.3 | 0.0 | -3.39 | 0.53 | 0.56 | — | 3.8 | 0.004 | 0.89 | 0.0 | 0.05 | 14.67 | 0.00 | 2.067 | 25.63 | 0.11 | 3.7 | 96.3 | 0.0 | -0.69 | 2.92 | 0.64 | 0.80 | — | 8280 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oSJ | 20183 | 2022-12-11 | 2019-05-01 | 2.8 | 2.81 | — | 2.8 | 0.011 | 1.13 | 0.0 | 0.07 | 13.69 | 0.00 | 2.227 | 10.71 | 0.00 | 18.6 | 79.7 | 1.7 | -4.71 | 0.50 | 0.79 | 4.82 | 2.8 | 0.003 | 0.75 | 0.0 | 0.06 | 16.79 | 0.00 | 2.235 | 9.22 | 5.81 | 13.4 | 86.6 | 0.0 | -3.82 | 0.47 | 0.51 | 0.79 | 4.30 | 4210 | 610 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V4P | 21044 | 2022-12-12 | 2019-11-28 | 2.8 | 2.94 | — | 2.9 | 0.005 | 0.60 | 1.0 | 0.05 | 12.28 | 0.00 | 2.084 | 10.66 | 3.16 | 4.1 | 95.7 | 0.2 | -2.71 | 0.72 | 0.85 | 4.46 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.26 | 0.00 | 2.067 | 10.34 | 2.14 | 3.7 | 96.3 | 0.0 | -0.48 | 2.06 | 0.74 | 0.86 | 3.73 | 9717 | 1262 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6VAK | 21141 | 2022-12-14 | 2019-12-17 | 3.48 | 3.85 | — | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.36 | 0.00 | 2.047 | 7.47 | 2.96 | 8.2 | 91.8 | 0.0 | -2.80 | 0.73 | 0.81 | 3.28 | 3.8 | 0.003 | 0.59 | 0.0 | 0.03 | 16.38 | 0.00 | 2.184 | 6.10 | 0.31 | 6.3 | 93.7 | 0.0 | 2.20 | 0.53 | 0.71 | 0.83 | 2.91 | 22781 | 2992 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAM | 21143 | 2022-12-13 | 2019-12-17 | 3.63 | 4.11 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.04 | 14.63 | 0.00 | 2.290 | 9.78 | 0.00 | 7.3 | 92.7 | 0.0 | -1.89 | 0.65 | 0.76 | 2.23 | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 16.09 | 0.00 | 2.359 | 6.65 | 0.00 | 5.2 | 94.8 | 0.0 | 2.75 | 0.48 | 0.65 | 0.79 | 2.21 | 13360 | 1712 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD4 | 6633 | 2022-12-15 | 2016-03-28 | 3.4 | 3.40 | — | 3.4 | 0.009 | 0.96 | 0.0 | 0.05 | 10.21 | 0.00 | 2.157 | 15.85 | 0.00 | 6.8 | 93.0 | 0.2 | -4.82 | 0.80 | 0.86 | 3.90 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.69 | 0.00 | 2.029 | 11.52 | 0.48 | 3.9 | 96.1 | 0.0 | 0.66 | 0.73 | 0.80 | 0.87 | 2.26 | 24054 | 2982 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 6VAL | 21142 | 2022-12-14 | 2019-12-17 | 3.87 | 4.25 | — | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 14.40 | 0.00 | 2.052 | 9.96 | 1.02 | 6.0 | 94.0 | 0.0 | -3.34 | 0.66 | 0.73 | 2.18 | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 16.74 | 0.00 | 2.129 | 7.64 | 0.97 | 2.8 | 97.2 | 0.0 | 1.31 | 2.44 | 0.68 | 0.79 | 1.61 | 21615 | 2827 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L93 | 4015 | 2022-12-16 | 2016-06-09 | 3.9 | 4.05 | — | 4.1 | 0.004 | 0.92 | 0.0 | 0.04 | 8.71 | 0.00 | 1.566 | 7.24 | 0.00 | 9.8 | 90.2 | 0.0 | -2.97 | 0.53 | 0.75 | 1.23 | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 16.80 | 0.00 | 2.155 | 11.85 | 0.59 | 6.5 | 93.3 | 0.1 | 0.54 | 1.70 | 0.56 | 0.81 | 1.09 | 31212 | 4032 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD0 | 6631 | 2022-12-15 | 2016-03-28 | 3.47 | 3.93 | — | 3.8 | 0.012 | 0.82 | 0.0 | 0.05 | 10.31 | 0.00 | 1.989 | 15.63 | 0.00 | 13.3 | 85.9 | 0.8 | -5.89 | 0.85 | 0.82 | 3.48 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 14.32 | 0.00 | 2.131 | 13.81 | 0.12 | 4.7 | 95.2 | 0.1 | 0.79 | 2.53 | 0.85 | 0.86 | 2.00 | 23478 | 2976 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 3JBR | 6475 | 2022-12-13 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.008 | 1.30 | 0.0 | 0.06 | 8.64 | 0.00 | 1.419 | 19.29 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.005 | 0.80 | 0.0 | 0.04 | 11.10 | 0.00 | 2.075 | 17.72 | 0.00 | 12.5 | 85.4 | 2.1 | -0.94 | 1.53 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2022-12-20 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.27 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 11.39 | 0.01 | 1.907 | 20.78 | 0.00 | 14.9 | 84.4 | 0.8 | -3.93 | 1.98 | 0.72 | 0.72 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✔ | 6Po3 | 20408 | 2022-12-11 | 2019-07-03 | 4.28 | 4.38 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 11.03 | 0.00 | 2.179 | 2.55 | 0.00 | 0.4 | 99.6 | 0.0 | -1.68 | 0.75 | 0.75 | — | 4.3 | 0.004 | 0.60 | 0.0 | 0.04 | 13.00 | 0.00 | 1.946 | 10.72 | 0.00 | 4.3 | 95.7 | 0.0 | -0.19 | 2.56 | 0.79 | 0.79 | — | 53225 | 3406 | 20 | 0 | 12 | 0 | 26724 | logfile |
✔ | 6Li3 | 0902 | 2022-12-12 | 2019-12-10 | 3.32 | 3.48 | — | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 13.86 | 0.00 | 2.124 | 7.78 | 0.00 | 2.4 | 97.6 | 0.0 | -2.69 | 0.55 | 0.68 | 0.78 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 16.59 | 0.00 | 2.144 | 10.45 | 0.22 | 3.7 | 96.3 | 0.0 | -0.22 | 1.77 | 0.59 | 0.77 | 1.71 | 8289 | 1045 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WFE | 8827 | 2022-12-13 | 2017-07-11 | 3.64 | 4.04 | — | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 22.67 | 0.00 | 1.891 | 14.85 | 0.09 | 4.6 | 95.3 | 0.1 | -1.79 | 0.80 | 0.67 | 1.90 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 24.00 | 0.00 | 2.062 | 17.23 | 0.34 | 4.1 | 95.9 | 0.0 | 0.58 | 2.54 | 0.84 | 0.75 | 1.52 | 15523 | 1447 | 12 | 210 | 0 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2022-12-12 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.008 | 1.32 | 0.0 | 0.06 | 8.46 | 0.00 | 2.250 | 17.07 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 2.6 | 0.004 | 0.80 | 0.0 | 0.04 | 12.88 | 0.00 | 2.172 | 19.50 | 0.26 | 5.1 | 94.9 | 0.0 | -0.14 | 1.24 | 0.70 | 0.78 | 0.46 | 12705 | 1685 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6H3J | 0134 | 2022-12-14 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.43 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 13.39 | 0.00 | 1.860 | 56.32 | 0.32 | 21.3 | 78.7 | 0.0 | -4.95 | 2.68 | 0.78 | 0.86 | 2.86 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✔ | 6PiG | 20350 | 2022-12-16 | 2019-06-26 | 3.5 | 3.54 | 3.59 | 3.5 | 0.014 | 1.75 | 1.0 | 0.09 | 16.07 | 0.00 | 2.173 | 2.07 | 1.58 | 15.2 | 81.4 | 3.5 | -4.85 | 0.60 | 0.76 | 2.54 | 3.5 | 0.004 | 0.83 | 0.0 | 0.05 | 17.25 | 0.01 | 2.118 | 11.12 | 0.43 | 15.9 | 83.6 | 0.5 | -2.84 | 0.59 | 0.65 | 0.79 | 2.28 | 28867 | 3439 | 11 | 60 | 0 | 0 | 0 | logfile |