Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M62	23687	2023-11-13	2021-03-25	3.9	3.91	—	4.3	0.065	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.2	0.003	0.95	0.0	0.05	15.86	0.00	2.112	24.41	0.00	23.0	77.0	0.0	-4.78	2.77	0.57	0.65	3.88	2380	320	10	0	10	0	0	logfile
✔	8oMU	16977	2023-11-13	2023-03-31	3.43	3.90	3.53	3.8	0.003	0.65	0.0	0.04	18.00	0.00	2.230	13.64	0.79	4.1	95.9	0.0	0.64	0.61	0.77	1.27	3.8	0.003	0.65	0.0	0.04	17.76	0.00	2.229	13.64	0.39	4.0	96.0	0.0	0.91	0.87	0.60	0.76	1.22	4737	612	2	0	0	0	0	logfile
✔	7P68	13221	2023-11-14	2021-07-15	2.9	3.23	2.85	3.1	0.006	0.90	0.0	0.07	12.92	0.00	2.430	4.45	0.00	3.3	96.7	0.0	-3.06	0.46	0.80	3.76	3.1	0.006	0.83	0.0	0.05	16.38	0.00	2.095	12.45	5.27	6.7	93.3	0.0	-3.47	1.52	0.41	0.83	3.89	8120	1080	10	0	0	0	0	logfile
✔	7P6D	13226	2023-11-13	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.008	0.77	0.0	0.05	13.56	0.00	2.042	5.75	0.20	12.9	87.1	0.0	-3.20	2.43	0.48	0.83	4.66	4340	575	5	0	0	0	0	logfile
✔	7UUW	26805	2023-11-19	2022-04-29	3.36	3.61	3.51	3.6	0.007	0.75	0.0	0.05	17.00	0.00	2.202	7.09	1.34	3.1	96.9	0.0	-0.17	0.67	0.86	3.53	3.6	0.006	0.63	0.0	0.04	16.59	0.00	2.109	6.53	0.07	3.4	96.6	0.0	0.40	0.33	0.65	0.87	3.14	24852	3174	18	0	12	0	0	logfile
✔	8HHA	34757	2023-11-18	2022-11-16	3.4	3.24	3.42	3.4	0.003	0.60	0.0	0.04	13.55	0.00	1.970	6.08	0.00	3.0	96.9	0.0	0.84	0.78	0.87	3.10	3.4	0.003	0.54	0.0	0.04	15.24	0.00	1.923	6.94	0.12	3.8	96.2	0.0	0.61	0.30	0.79	0.89	2.77	24245	3129	12	0	11	0	0	logfile
✔	7Xo2	33334	2023-11-13	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.005	0.60	0.0	0.05	19.10	0.00	2.290	4.76	3.88	7.2	92.8	0.0	-1.69	2.16	0.49	0.88	6.49	2550	372	6	0	0	0	0	logfile
✔	8ADS	15369	2023-11-13	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.005	0.63	0.0	0.05	16.12	0.00	2.173	10.83	0.19	2.1	97.9	0.0	-3.69	0.54	0.49	0.82	5.70	5170	750	10	0	0	0	0	logfile
✔	5TFY	8405	2023-11-15	2016-09-27	3.4	4.55	—	4.1	0.007	1.91	124.0	0.09	13.18	0.00	1.377	21.22	3.79	4.9	95.1	0.0	-2.21	0.47	0.74	3.32	4.1	0.003	0.71	0.0	0.04	16.31	0.00	1.824	26.73	0.61	3.1	96.9	0.0	-0.69	1.82	0.43	0.70	2.13	65182	4264	26	0	0	0	33046	logfile
✔	8EDX	28042	2023-11-16	2022-09-06	2.81	2.99	2.70	2.9	0.006	0.60	0.0	0.05	15.44	0.00	2.378	5.42	0.71	4.7	95.3	0.0	-2.86	0.78	0.92	5.20	2.9	0.004	0.55	0.0	0.04	16.09	0.00	2.264	5.57	1.77	2.0	98.0	0.0	-0.55	0.33	0.79	0.92	5.12	16074	2088	6	0	0	0	0	logfile
✔	7Q8B	13863	2023-11-16	2021-11-11	3.3	3.20	3.22	3.2	0.004	0.50	0.0	0.05	10.85	0.00	2.012	3.76	0.00	2.7	97.3	0.0	1.33	0.70	0.86	4.06	3.1	0.004	0.56	0.0	0.05	15.00	0.00	2.070	6.14	0.19	2.5	97.5	0.0	0.74	0.48	0.71	0.89	3.78	14640	1850	10	0	15	0	0	logfile
✔	7Q5A	13830	2023-11-15	2021-11-03	2.46	2.69	—	2.6	0.112	1.10	0.0	0.06	9.54	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.055	4.01	258.0	0.21	16.76	0.02	1.950	33.36	2.52	0.0	100.0	0.0	0.88	1.64	0.67	0.85	6.22	61600	5600	800	0	1600	0	0	logfile
✔	8HF0	34707	2023-11-20	2022-11-09	3.72	3.91	3.82	3.8	0.003	0.57	0.0	0.04	14.16	0.00	2.157	10.42	0.00	3.4	96.6	0.0	0.32	0.88	0.79	1.25	3.8	0.004	0.66	0.0	0.04	15.75	0.00	2.090	13.81	0.33	4.1	95.9	0.1	0.32	0.39	0.89	0.80	1.06	29510	3388	7	97	0	0	0	logfile
✔	7Q8C	13864	2023-11-16	2021-11-11	2.72	2.78	2.67	2.7	0.005	0.62	0.0	0.05	10.88	0.00	1.953	1.76	0.00	3.0	97.0	0.0	0.25	0.73	0.89	5.04	2.7	0.003	0.64	0.0	0.05	15.05	0.00	1.803	2.86	1.42	3.4	96.6	0.0	0.20	0.89	0.73	0.91	4.28	14975	1850	15	0	10	360	0	logfile
✔	7V49	31704	2023-11-13	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.73	0.0	0.05	14.81	0.00	2.500	7.22	0.00	13.2	86.8	0.0	-5.75	1.27	0.31	0.69	4.86	1221	180	3	0	0	0	0	logfile
✔	8FVH	29487	2023-11-17	2023-01-18	3.1	3.49	3.43	3.5	0.003	0.59	0.0	0.04	14.72	0.00	2.050	7.34	0.07	4.4	95.5	0.1	0.53	0.57	0.84	2.10	3.5	0.003	0.62	0.0	0.04	16.75	0.00	2.072	8.91	0.42	4.6	95.3	0.1	0.57	0.42	0.56	0.85	1.78	70392	8886	36	0	0	0	0	logfile
✘	8A7T	15225	2023-11-13	2022-06-21	3.0	2.93	3.07	3.2	0.003	0.46	0.0	0.04	8.48	0.00	2.302	5.04	0.00	2.8	97.2	0.0	-4.48	0.39	0.85	4.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3702	444	6	0	0	0	0	logfile
✔	6M5G	30085	2023-11-17	2020-03-10	3.6	3.74	—	3.6	0.010	0.82	0.0	0.05	13.87	0.00	1.951	11.79	9.29	9.4	90.4	0.2	-3.64	0.74	0.90	1.98	3.6	0.002	0.62	0.0	0.04	14.94	0.00	2.001	9.59	0.43	3.9	96.0	0.0	-0.87	1.46	0.73	0.89	1.61	17363	2204	13	0	10	0	0	logfile
✔	8HH1	34748	2023-11-18	2022-11-16	2.9	3.08	2.86	3.0	0.004	0.66	4.0	0.05	13.60	0.00	1.081	4.29	1.01	1.7	98.3	0.0	1.35	0.81	0.90	3.97	3.0	0.004	0.56	0.0	0.05	15.84	0.00	1.864	4.74	1.67	2.5	97.5	0.0	0.97	0.45	0.82	0.93	3.69	24280	3129	13	0	12	0	0	logfile
✔	8BW7	16280	2023-11-13	2022-12-06	3.53	4.04	3.62	4.0	0.003	0.62	0.0	0.04	17.61	0.00	2.164	11.00	0.00	3.3	96.7	0.0	0.80	0.55	0.72	1.22	4.0	0.003	0.60	0.0	0.04	17.68	0.00	2.159	11.63	0.39	3.3	96.7	0.0	0.79	0.86	0.58	0.73	1.29	4748	612	3	0	2	0	0	logfile

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