Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WiV	21685	2023-04-22	2020-04-10	3.3	3.32	—	3.3	0.006	0.79	0.0	0.05	14.10	0.00	2.042	21.71	0.08	3.1	96.9	0.0	-1.94	0.79	0.81	2.67	3.4	0.004	0.61	0.0	0.04	15.57	0.00	2.087	8.32	0.68	2.8	97.2	0.0	1.05	1.97	0.81	0.83	2.43	11206	1352	4	0	17	0	0	logfile
✘	8EY2	28666	2023-04-20	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4908	634	4	0	0	0	0	logfile
✔	8G8G	29850	2023-04-23	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	8E55	27903	2023-04-22	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	7WM4	32599	2023-04-27	2022-01-14	3.2	4.44	—	3.2	0.003	0.63	0.0	0.04	15.61	0.00	2.140	9.96	0.08	4.9	95.1	0.1	-1.73	0.86	0.70	0.72	3.2	0.004	0.73	0.0	0.04	17.59	0.00	2.100	23.51	0.20	9.7	90.1	0.2	-2.43	1.36	0.87	0.77	0.52	25848	2658	38	162	82	0	0	logfile
✔	6YSZ	10911	2023-04-23	2020-04-23	3.6	2.67	—	3.8	0.004	0.56	0.0	0.04	15.54	0.00	2.295	11.00	0.38	2.9	97.1	0.0	-1.45	0.80	0.81	1.22	3.9	0.003	0.58	0.0	0.04	17.83	0.00	2.145	9.80	0.81	1.2	98.8	0.0	1.97	1.02	0.80	0.79	1.01	15192	1896	6	0	0	0	0	logfile
✔	8B1R	15803	2023-04-26	2022-09-12	3.2	3.47	3.13	3.3	0.004	0.63	0.0	0.05	9.18	0.00	2.210	7.58	0.34	0.7	99.3	0.0	0.06	0.84	0.87	2.66	3.3	0.004	0.55	0.0	0.04	13.23	0.00	2.221	5.19	0.17	1.6	98.4	0.0	2.27	0.64	0.86	0.90	2.75	21953	2746	6	0	1	0	0	logfile
✔	8H8C	34542	2023-04-24	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.003	0.67	0.0	0.04	16.15	0.00	2.090	9.51	0.22	13.4	86.6	0.0	-3.43	0.70	0.71	0.82	2.83	16940	2078	4	0	0	0	0	logfile
✔	5X6o	6708	2023-04-25	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.05	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.003	0.79	0.0	0.04	14.79	0.00	2.177	10.11	0.29	8.4	90.3	1.3	-0.74	0.82	0.62	0.76	0.97	19309	2701	2	0	0	0	0	logfile
✔	7U2K	26313	2023-04-20	2022-02-24	3.3	3.77	—	3.5	0.010	0.76	0.0	0.05	14.70	0.00	2.198	6.93	0.43	6.0	94.0	0.0	-1.90	0.83	0.89	3.29	3.6	0.003	0.59	0.0	0.04	15.58	0.00	2.189	6.17	0.14	3.8	96.2	0.0	0.52	0.48	0.78	0.85	1.59	6755	889	5	0	1	0	0	logfile
✔	7L2J	23130	2023-04-24	2020-12-17	3.66	3.92	3.68	3.9	0.007	0.70	0.0	0.28	11.48	0.00	2.074	2.22	0.16	4.9	95.1	0.0	0.68	0.58	0.79	2.07	3.9	0.003	0.71	0.0	0.04	15.94	0.00	2.034	10.05	0.21	5.8	94.2	0.0	0.32	1.84	0.57	0.80	1.21	17336	2116	8	0	4	0	0	logfile
✔	7WoG	32651	2023-04-20	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	6VXo	21446	2023-04-20	2020-02-22	3.5	3.81	—	3.8	0.012	1.40	0.0	0.05	24.43	0.00	2.125	14.64	21.57	12.2	87.4	0.4	-3.90	0.63	0.83	0.88	3.8	0.004	0.78	0.0	0.05	18.44	0.00	2.129	12.14	0.61	10.5	89.5	0.0	-0.50	0.68	0.61	0.81	1.08	8048	904	8	0	12	0	0	logfile
✔	8DD4	27334	2023-04-21	2022-06-17	3.1	3.27	3.15	3.2	0.003	0.65	0.0	0.04	14.94	0.00	2.219	8.36	0.00	2.8	97.0	0.2	0.21	0.74	0.75	2.15	3.2	0.003	0.63	0.0	0.04	16.72	0.00	2.241	12.68	0.52	3.1	96.7	0.2	0.49	1.61	0.75	0.79	2.11	10426	1255	4	0	0	21	0	logfile
✔	7CKX	30393	2023-04-23	2020-07-20	3.54	3.65	—	3.6	0.003	0.50	0.0	0.04	13.48	0.00	2.160	12.77	2.09	3.2	96.8	0.0	-3.07	0.59	0.71	1.45	3.6	0.004	0.78	0.0	0.05	16.61	0.00	2.140	22.36	1.39	4.8	95.2	0.0	-1.32	0.76	0.61	0.76	1.72	8112	1035	5	0	2	0	0	logfile
✔	6DBX	7853	2023-04-24	2018-05-03	4.2	4.39	—	4.2	0.005	0.85	0.0	0.05	20.21	0.00	2.076	20.45	0.00	11.9	88.0	0.2	-4.68	0.81	0.80	—	4.2	0.003	0.72	0.0	0.04	18.14	0.00	1.782	17.07	0.06	5.2	94.7	0.1	-1.09	0.93	0.81	0.82	—	17436	1933	8	100	6	0	0	logfile
✔	7ANZ	11835	2023-04-24	2020-10-13	3.6	2.50	—	3.7	0.003	0.78	0.0	0.05	15.89	0.00	2.277	4.54	0.31	6.5	93.4	0.2	-5.88	0.77	0.74	1.50	3.7	0.003	0.70	0.0	0.04	17.57	0.00	2.104	10.67	0.52	6.5	93.5	0.0	-0.61	0.66	0.78	0.76	1.10	16751	2041	4	0	0	0	0	logfile
✔	5U76	8517	2023-04-28	2016-12-11	3.76	4.46	—	4.4	0.007	1.04	0.0	0.06	13.03	0.00	1.410	5.10	0.51	8.4	91.3	0.2	-3.69	0.56	0.58	0.90	4.3	0.004	0.91	0.0	0.05	15.82	0.00	2.145	21.47	0.48	5.9	94.1	0.0	-0.64	2.52	0.64	0.77	1.13	28364	3512	4	0	0	0	0	logfile
✔	6PWP	20510	2023-04-23	2019-07-23	4.1	6.04	4.26	4.4	0.010	0.86	0.0	0.05	13.54	0.00	2.096	24.59	0.31	6.8	93.2	0.0	-3.74	0.80	0.87	—	4.4	0.004	0.63	0.0	0.04	13.58	0.00	2.101	15.10	0.00	4.7	95.3	0.0	0.14	1.26	0.80	0.86	—	14903	1960	7	0	0	0	0	logfile
✔	7W3V	32294	2023-04-20	2021-11-26	3.11	2.33	3.12	2.1	0.004	0.65	0.0	0.05	13.42	0.00	2.228	7.96	0.12	5.7	94.3	0.0	-2.67	0.79	0.79	3.31	2.1	0.003	0.63	0.0	0.05	15.18	0.00	2.216	8.10	0.62	7.3	92.7	0.0	-2.54	1.11	0.80	0.82	3.05	7480	918	8	0	24	0	0	logfile

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