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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7M62 | 23687 | 2023-11-13 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.065 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.003 | 0.95 | 0.0 | 0.05 | 15.86 | 0.00 | 2.112 | 24.41 | 0.00 | 23.0 | 77.0 | 0.0 | -4.78 | 2.77 | 0.57 | 0.65 | 3.88 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 8oMU | 16977 | 2023-11-13 | 2023-03-31 | 3.43 | 3.90 | 3.53 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 18.00 | 0.00 | 2.230 | 13.64 | 0.79 | 4.1 | 95.9 | 0.0 | 0.64 | 0.61 | 0.77 | 1.27 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 17.76 | 0.00 | 2.229 | 13.64 | 0.39 | 4.0 | 96.0 | 0.0 | 0.91 | 0.87 | 0.60 | 0.76 | 1.22 | 4737 | 612 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P68 | 13221 | 2023-11-14 | 2021-07-15 | 2.9 | 3.23 | 2.85 | 3.1 | 0.006 | 0.90 | 0.0 | 0.07 | 12.92 | 0.00 | 2.430 | 4.45 | 0.00 | 3.3 | 96.7 | 0.0 | -3.06 | 0.46 | 0.80 | 3.76 | 3.1 | 0.006 | 0.83 | 0.0 | 0.05 | 16.38 | 0.00 | 2.095 | 12.45 | 5.27 | 6.7 | 93.3 | 0.0 | -3.47 | 1.52 | 0.41 | 0.83 | 3.89 | 8120 | 1080 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P6D | 13226 | 2023-11-13 | 2021-07-15 | 3.3 | 3.43 | 3.17 | 3.5 | 0.003 | 0.66 | 0.0 | 0.05 | 11.41 | 0.00 | 2.575 | 2.25 | 0.00 | 2.7 | 97.3 | 0.0 | -2.54 | 0.55 | 0.77 | 3.72 | 3.5 | 0.008 | 0.77 | 0.0 | 0.05 | 13.56 | 0.00 | 2.042 | 5.75 | 0.20 | 12.9 | 87.1 | 0.0 | -3.20 | 2.43 | 0.48 | 0.83 | 4.66 | 4340 | 575 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UUW | 26805 | 2023-11-19 | 2022-04-29 | 3.36 | 3.61 | 3.51 | 3.6 | 0.007 | 0.75 | 0.0 | 0.05 | 17.00 | 0.00 | 2.202 | 7.09 | 1.34 | 3.1 | 96.9 | 0.0 | -0.17 | 0.67 | 0.86 | 3.53 | 3.6 | 0.006 | 0.63 | 0.0 | 0.04 | 16.59 | 0.00 | 2.109 | 6.53 | 0.07 | 3.4 | 96.6 | 0.0 | 0.40 | 0.33 | 0.65 | 0.87 | 3.14 | 24852 | 3174 | 18 | 0 | 12 | 0 | 0 | logfile |
✔ | 8HHA | 34757 | 2023-11-18 | 2022-11-16 | 3.4 | 3.24 | 3.42 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 13.55 | 0.00 | 1.970 | 6.08 | 0.00 | 3.0 | 96.9 | 0.0 | 0.84 | 0.78 | 0.87 | 3.10 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.24 | 0.00 | 1.923 | 6.94 | 0.12 | 3.8 | 96.2 | 0.0 | 0.61 | 0.30 | 0.79 | 0.89 | 2.77 | 24245 | 3129 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2023-11-13 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.005 | 0.60 | 0.0 | 0.05 | 19.10 | 0.00 | 2.290 | 4.76 | 3.88 | 7.2 | 92.8 | 0.0 | -1.69 | 2.16 | 0.49 | 0.88 | 6.49 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ADS | 15369 | 2023-11-13 | 2022-07-11 | 3.05 | 2.91 | 2.80 | 3.2 | 0.004 | 0.49 | 0.0 | 0.06 | 13.38 | 0.00 | 2.218 | 11.86 | 0.00 | 1.4 | 98.6 | 0.0 | -3.19 | 0.48 | 0.79 | 5.21 | 3.2 | 0.005 | 0.63 | 0.0 | 0.05 | 16.12 | 0.00 | 2.173 | 10.83 | 0.19 | 2.1 | 97.9 | 0.0 | -3.69 | 0.54 | 0.49 | 0.82 | 5.70 | 5170 | 750 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TFY | 8405 | 2023-11-15 | 2016-09-27 | 3.4 | 4.55 | — | 4.1 | 0.007 | 1.91 | 124.0 | 0.09 | 13.18 | 0.00 | 1.377 | 21.22 | 3.79 | 4.9 | 95.1 | 0.0 | -2.21 | 0.47 | 0.74 | 3.32 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 16.31 | 0.00 | 1.824 | 26.73 | 0.61 | 3.1 | 96.9 | 0.0 | -0.69 | 1.82 | 0.43 | 0.70 | 2.13 | 65182 | 4264 | 26 | 0 | 0 | 0 | 33046 | logfile |
✔ | 8EDX | 28042 | 2023-11-16 | 2022-09-06 | 2.81 | 2.99 | 2.70 | 2.9 | 0.006 | 0.60 | 0.0 | 0.05 | 15.44 | 0.00 | 2.378 | 5.42 | 0.71 | 4.7 | 95.3 | 0.0 | -2.86 | 0.78 | 0.92 | 5.20 | 2.9 | 0.004 | 0.55 | 0.0 | 0.04 | 16.09 | 0.00 | 2.264 | 5.57 | 1.77 | 2.0 | 98.0 | 0.0 | -0.55 | 0.33 | 0.79 | 0.92 | 5.12 | 16074 | 2088 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q8B | 13863 | 2023-11-16 | 2021-11-11 | 3.3 | 3.20 | 3.22 | 3.2 | 0.004 | 0.50 | 0.0 | 0.05 | 10.85 | 0.00 | 2.012 | 3.76 | 0.00 | 2.7 | 97.3 | 0.0 | 1.33 | 0.70 | 0.86 | 4.06 | 3.1 | 0.004 | 0.56 | 0.0 | 0.05 | 15.00 | 0.00 | 2.070 | 6.14 | 0.19 | 2.5 | 97.5 | 0.0 | 0.74 | 0.48 | 0.71 | 0.89 | 3.78 | 14640 | 1850 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 7Q5A | 13830 | 2023-11-15 | 2021-11-03 | 2.46 | 2.69 | — | 2.6 | 0.112 | 1.10 | 0.0 | 0.06 | 9.54 | 0.00 | 2.247 | 3.06 | 0.00 | 0.0 | 100.0 | 0.0 | 0.99 | 0.66 | 0.84 | 6.72 | 2.6 | 0.055 | 4.01 | 258.0 | 0.21 | 16.76 | 0.02 | 1.950 | 33.36 | 2.52 | 0.0 | 100.0 | 0.0 | 0.88 | 1.64 | 0.67 | 0.85 | 6.22 | 61600 | 5600 | 800 | 0 | 1600 | 0 | 0 | logfile |
✔ | 8HF0 | 34707 | 2023-11-20 | 2022-11-09 | 3.72 | 3.91 | 3.82 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 14.16 | 0.00 | 2.157 | 10.42 | 0.00 | 3.4 | 96.6 | 0.0 | 0.32 | 0.88 | 0.79 | 1.25 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 15.75 | 0.00 | 2.090 | 13.81 | 0.33 | 4.1 | 95.9 | 0.1 | 0.32 | 0.39 | 0.89 | 0.80 | 1.06 | 29510 | 3388 | 7 | 97 | 0 | 0 | 0 | logfile |
✔ | 7Q8C | 13864 | 2023-11-16 | 2021-11-11 | 2.72 | 2.78 | 2.67 | 2.7 | 0.005 | 0.62 | 0.0 | 0.05 | 10.88 | 0.00 | 1.953 | 1.76 | 0.00 | 3.0 | 97.0 | 0.0 | 0.25 | 0.73 | 0.89 | 5.04 | 2.7 | 0.003 | 0.64 | 0.0 | 0.05 | 15.05 | 0.00 | 1.803 | 2.86 | 1.42 | 3.4 | 96.6 | 0.0 | 0.20 | 0.89 | 0.73 | 0.91 | 4.28 | 14975 | 1850 | 15 | 0 | 10 | 360 | 0 | logfile |
✔ | 7V49 | 31704 | 2023-11-13 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.73 | 0.0 | 0.05 | 14.81 | 0.00 | 2.500 | 7.22 | 0.00 | 13.2 | 86.8 | 0.0 | -5.75 | 1.27 | 0.31 | 0.69 | 4.86 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FVH | 29487 | 2023-11-17 | 2023-01-18 | 3.1 | 3.49 | 3.43 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 14.72 | 0.00 | 2.050 | 7.34 | 0.07 | 4.4 | 95.5 | 0.1 | 0.53 | 0.57 | 0.84 | 2.10 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.75 | 0.00 | 2.072 | 8.91 | 0.42 | 4.6 | 95.3 | 0.1 | 0.57 | 0.42 | 0.56 | 0.85 | 1.78 | 70392 | 8886 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A7T | 15225 | 2023-11-13 | 2022-06-21 | 3.0 | 2.93 | 3.07 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 8.48 | 0.00 | 2.302 | 5.04 | 0.00 | 2.8 | 97.2 | 0.0 | -4.48 | 0.39 | 0.85 | 4.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3702 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M5G | 30085 | 2023-11-17 | 2020-03-10 | 3.6 | 3.74 | — | 3.6 | 0.010 | 0.82 | 0.0 | 0.05 | 13.87 | 0.00 | 1.951 | 11.79 | 9.29 | 9.4 | 90.4 | 0.2 | -3.64 | 0.74 | 0.90 | 1.98 | 3.6 | 0.002 | 0.62 | 0.0 | 0.04 | 14.94 | 0.00 | 2.001 | 9.59 | 0.43 | 3.9 | 96.0 | 0.0 | -0.87 | 1.46 | 0.73 | 0.89 | 1.61 | 17363 | 2204 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 8HH1 | 34748 | 2023-11-18 | 2022-11-16 | 2.9 | 3.08 | 2.86 | 3.0 | 0.004 | 0.66 | 4.0 | 0.05 | 13.60 | 0.00 | 1.081 | 4.29 | 1.01 | 1.7 | 98.3 | 0.0 | 1.35 | 0.81 | 0.90 | 3.97 | 3.0 | 0.004 | 0.56 | 0.0 | 0.05 | 15.84 | 0.00 | 1.864 | 4.74 | 1.67 | 2.5 | 97.5 | 0.0 | 0.97 | 0.45 | 0.82 | 0.93 | 3.69 | 24280 | 3129 | 13 | 0 | 12 | 0 | 0 | logfile |
✔ | 8BW7 | 16280 | 2023-11-13 | 2022-12-06 | 3.53 | 4.04 | 3.62 | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 17.61 | 0.00 | 2.164 | 11.00 | 0.00 | 3.3 | 96.7 | 0.0 | 0.80 | 0.55 | 0.72 | 1.22 | 4.0 | 0.003 | 0.60 | 0.0 | 0.04 | 17.68 | 0.00 | 2.159 | 11.63 | 0.39 | 3.3 | 96.7 | 0.0 | 0.79 | 0.86 | 0.58 | 0.73 | 1.29 | 4748 | 612 | 3 | 0 | 2 | 0 | 0 | logfile |