Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CU7	7618	2022-12-11	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	17.37	0.71	13.1	86.9	0.0	-4.59	1.76	0.38	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	6FLT	4276	2022-12-11	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.005	0.67	0.0	0.05	10.57	0.00	2.300	12.13	0.00	20.7	79.3	0.0	-5.03	2.04	0.41	0.79	4.07	8060	580	10	0	0	0	4100	logfile
✔	6E9E	9013	2022-12-11	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.87	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.003	0.57	0.0	0.04	14.04	0.00	2.222	5.14	0.39	3.1	96.9	0.0	0.41	1.09	0.78	0.90	3.59	8163	863	3	51	1	0	0	logfile
✔	5YRN	6842	2022-12-12	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.8	0.004	0.89	0.0	0.05	14.67	0.00	2.067	25.63	0.11	3.7	96.3	0.0	-0.69	2.92	0.64	0.80	—	8280	1044	12	0	0	0	0	logfile
✔	6oSJ	20183	2022-12-11	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.51	0.79	4.30	4210	610	10	0	0	0	0	logfile
✔	6V4P	21044	2022-12-12	2019-11-28	2.8	2.94	—	2.9	0.005	0.60	1.0	0.05	12.28	0.00	2.084	10.66	3.16	4.1	95.7	0.2	-2.71	0.72	0.85	4.46	2.9	0.003	0.57	0.0	0.04	15.26	0.00	2.067	10.34	2.14	3.7	96.3	0.0	-0.48	2.06	0.74	0.86	3.73	9717	1262	6	0	7	0	0	logfile
✔	6VAK	21141	2022-12-14	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.003	0.59	0.0	0.03	16.38	0.00	2.184	6.10	0.31	6.3	93.7	0.0	2.20	0.53	0.71	0.83	2.91	22781	2992	11	0	0	0	0	logfile
✔	6VAM	21143	2022-12-13	2019-12-17	3.63	4.11	—	4.0	0.005	0.84	0.0	0.04	14.63	0.00	2.290	9.78	0.00	7.3	92.7	0.0	-1.89	0.65	0.76	2.23	4.0	0.003	0.68	0.0	0.04	16.09	0.00	2.359	6.65	0.00	5.2	94.8	0.0	2.75	0.48	0.65	0.79	2.21	13360	1712	8	0	0	0	0	logfile
✔	3JD4	6633	2022-12-15	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	10.21	0.00	2.157	15.85	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.004	0.63	0.0	0.04	15.69	0.00	2.029	11.52	0.48	3.9	96.1	0.0	0.66	0.73	0.80	0.87	2.26	24054	2982	12	0	18	0	0	logfile
✔	6VAL	21142	2022-12-14	2019-12-17	3.87	4.25	—	4.2	0.005	0.74	0.0	0.04	14.40	0.00	2.052	9.96	1.02	6.0	94.0	0.0	-3.34	0.66	0.73	2.18	4.2	0.003	0.70	0.0	0.04	16.74	0.00	2.129	7.64	0.97	2.8	97.2	0.0	1.31	2.44	0.68	0.79	1.61	21615	2827	11	0	0	0	0	logfile
✔	5L93	4015	2022-12-16	2016-06-09	3.9	4.05	—	4.1	0.004	0.92	0.0	0.04	8.71	0.00	1.566	7.24	0.00	9.8	90.2	0.0	-2.97	0.53	0.75	1.23	4.0	0.003	0.76	0.0	0.04	16.80	0.00	2.155	11.85	0.59	6.5	93.3	0.1	0.54	1.70	0.56	0.81	1.09	31212	4032	18	0	0	0	0	logfile
✔	3JD0	6631	2022-12-15	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.63	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.003	0.69	0.0	0.04	14.32	0.00	2.131	13.81	0.12	4.7	95.2	0.1	0.79	2.53	0.85	0.86	2.00	23478	2976	12	0	6	0	0	logfile
✔	3JBR	6475	2022-12-13	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.29	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.005	0.80	0.0	0.04	11.10	0.00	2.075	17.72	0.00	12.5	85.4	2.1	-0.94	1.53	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✔	5N6W	3595	2022-12-20	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.004	0.76	0.0	0.04	11.39	0.01	1.907	20.78	0.00	14.9	84.4	0.8	-3.93	1.98	0.72	0.72	—	40752	2512	16	0	0	0	20032	logfile
✔	6Po3	20408	2022-12-11	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.55	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.004	0.60	0.0	0.04	13.00	0.00	1.946	10.72	0.00	4.3	95.7	0.0	-0.19	2.56	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	6Li3	0902	2022-12-12	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.78	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.8	0.003	0.65	0.0	0.04	16.59	0.00	2.144	10.45	0.22	3.7	96.3	0.0	-0.22	1.77	0.59	0.77	1.71	8289	1045	5	0	0	0	0	logfile
✔	5WFE	8827	2022-12-13	2017-07-11	3.64	4.04	—	3.8	0.004	0.66	0.0	0.04	22.67	0.00	1.891	14.85	0.09	4.6	95.3	0.1	-1.79	0.80	0.67	1.90	3.8	0.004	0.75	0.0	0.04	24.00	0.00	2.062	17.23	0.34	4.1	95.9	0.0	0.58	2.54	0.84	0.75	1.52	15523	1447	12	210	0	0	0	logfile
✔	3JAD	6344	2022-12-12	2015-06-08	3.9	2.16	—	3.8	0.008	1.32	0.0	0.06	8.46	0.00	2.250	17.07	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.004	0.80	0.0	0.04	12.88	0.00	2.172	19.50	0.26	5.1	94.9	0.0	-0.14	1.24	0.70	0.78	0.46	12705	1685	15	0	15	0	0	logfile
✔	6H3J	0134	2022-12-14	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.32	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✔	6PiG	20350	2022-12-16	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.75	1.0	0.09	16.07	0.00	2.173	2.07	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.004	0.83	0.0	0.05	17.25	0.01	2.118	11.12	0.43	15.9	83.6	0.5	-2.84	0.59	0.65	0.79	2.28	28867	3439	11	60	0	0	0	logfile

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