Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NAD	24270	2023-07-18	2021-06-21	3.04	2.90	3.01	3.0	0.002	0.52	0.0	0.04	13.90	0.00	2.159	6.43	0.34	3.4	96.6	0.0	0.96	0.69	0.79	3.04	3.0	0.002	0.48	0.0	0.03	14.91	0.00	2.100	5.75	0.07	3.3	96.7	0.0	1.32	0.29	0.71	0.83	2.72	43123	3338	27	756	1	0	0	logfile
✔	8F7B	28901	2023-07-08	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	17.29	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.002	0.48	0.0	0.04	16.28	0.00	2.227	7.36	0.34	2.1	97.9	0.0	2.15	1.13	0.59	0.79	2.11	16166	1894	18	0	17	6	0	logfile
✔	7RH9	24458	2023-07-07	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.002	0.48	0.0	0.04	15.63	0.00	2.149	8.70	0.81	1.2	98.8	0.0	2.64	0.90	0.63	0.86	4.00	14680	1792	4	0	0	0	0	logfile
✔	7UG0	26482	2023-07-03	2022-03-23	2.55	3.24	2.49	3.1	0.002	0.45	0.0	0.04	10.60	0.00	2.287	2.34	0.00	1.0	99.0	0.0	2.00	0.56	0.90	3.59	3.0	0.003	0.48	0.0	0.04	12.53	0.00	2.211	4.52	0.62	1.0	99.0	0.0	3.92	1.26	0.53	0.87	2.10	3126	418	1	0	3	4	0	logfile
✔	8G9F	29864	2023-07-17	2023-02-21	3.2	3.77	3.13	3.2	0.003	0.50	0.0	0.04	16.16	0.00	2.257	2.77	0.00	3.1	96.9	0.0	0.34	0.89	0.83	3.53	3.2	0.002	0.48	0.0	0.04	15.99	0.00	2.029	3.81	0.05	2.6	97.4	0.0	1.72	2.00	0.90	0.87	3.33	37540	2321	7	0	4	0	18758	logfile
✔	7XNV	33327	2023-07-09	2022-04-29	3.4	3.18	3.11	3.2	0.005	1.07	0.0	0.05	16.87	0.00	2.213	7.73	0.90	1.0	98.4	0.6	0.24	0.69	0.85	2.90	3.2	0.003	0.48	0.0	0.04	16.78	0.00	2.243	5.32	0.21	1.1	98.9	0.0	2.46	0.40	0.70	0.88	2.37	18378	2088	24	0	114	0	0	logfile
✔	8A0E	15052	2023-07-06	2022-05-27	2.8	3.09	2.92	3.0	0.003	0.60	0.0	0.04	13.10	0.00	2.176	2.58	0.00	1.7	98.3	0.0	-0.22	0.76	0.89	4.52	3.0	0.002	0.48	0.0	0.04	15.33	0.00	2.194	2.70	0.55	1.5	98.5	0.0	0.08	0.31	0.74	0.90	3.82	12082	1526	9	0	7	0	0	logfile
✔	7STL	25432	2023-07-12	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7VYQ	32211	2023-07-08	2021-11-15	3.13	3.33	—	3.4	0.005	0.78	0.0	0.04	17.69	0.01	2.056	6.00	0.00	2.8	97.2	0.0	-1.84	0.64	0.89	3.89	3.4	0.003	0.48	0.0	0.04	16.70	0.00	1.980	7.45	0.00	4.3	95.7	0.0	-0.98	1.21	0.58	0.87	3.53	17080	1120	8	0	8	0	8340	logfile
✔	7K0Q	22608	2023-07-04	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.48	0.0	0.04	14.21	0.00	2.189	4.84	0.11	2.5	97.5	0.0	1.24	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	8BVQ	16268	2023-07-12	2022-12-05	3.3	3.33	3.29	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.088	7.55	0.31	4.1	95.9	0.0	-0.42	0.54	0.73	1.75	3.5	0.002	0.48	0.0	0.04	16.24	0.00	2.051	7.03	0.39	5.0	95.0	0.0	-0.40	0.28	0.60	0.81	1.87	23125	1518	6	0	0	0	11250	logfile
✔	7ZDQ	14666	2023-07-04	2022-03-29	3.2	2.77	3.10	2.9	0.003	0.56	0.0	0.04	15.22	0.00	2.212	6.47	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.1	0.002	0.48	0.0	0.04	16.22	0.00	2.230	5.65	0.15	2.5	97.5	0.0	1.61	0.27	0.71	0.83	3.05	6264	763	3	0	3	0	0	logfile
✔	7oRN	13043	2023-07-07	2021-06-06	2.8	2.83	—	2.8	0.004	0.59	1.0	0.04	12.58	0.00	1.978	4.09	0.19	2.1	97.9	0.0	1.14	0.82	0.89	4.23	2.8	0.003	0.48	0.0	0.04	15.17	0.00	1.981	5.36	0.76	2.5	97.5	0.0	1.27	0.36	0.78	0.91	3.88	14811	1700	6	35	3	92	0	logfile
✔	7RZU	24778	2023-07-03	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7Y9X	33695	2023-07-09	2022-06-26	2.49	2.67	2.52	2.7	0.004	0.52	0.0	0.04	9.50	0.00	2.130	5.49	0.31	1.6	98.4	0.0	-0.15	0.70	0.82	4.82	2.7	0.002	0.48	0.0	0.04	14.67	0.00	2.206	6.55	1.30	1.4	98.6	0.0	1.17	1.95	0.67	0.82	3.94	18662	2192	4	38	4	0	0	logfile
✔	7USW	26741	2023-07-07	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	15.91	0.01	2.254	7.09	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.01	0.00	2.249	5.38	0.35	3.2	96.8	0.0	2.29	0.27	0.63	0.82	2.11	14322	1676	12	0	68	0	0	logfile
✔	7NKQ	12446	2023-07-05	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.71	0.00	2.008	6.87	1.05	2.3	97.7	0.0	2.27	0.33	0.82	0.84	2.51	10621	714	8	0	0	0	5312	logfile
✔	7XKi	33254	2023-07-15	2022-04-19	3.4	3.86	3.39	3.8	0.002	0.41	0.0	0.04	13.46	0.00	2.299	1.34	0.00	2.5	97.5	0.0	5.17	0.60	0.76	2.60	3.8	0.003	0.48	0.0	0.04	14.62	0.00	2.187	4.18	0.06	2.8	97.2	0.0	4.42	1.10	0.54	0.76	2.54	32280	1992	24	0	48	0	15996	logfile
✔	6ZBG	11154	2023-07-09	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.48	0.0	0.03	15.23	0.00	2.139	4.51	0.09	0.8	99.2	0.0	4.37	1.86	0.85	0.79	1.51	19534	1160	4	0	0	0	9902	logfile
✔	7NKD	12438	2023-07-05	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.003	0.48	0.0	0.04	15.43	0.00	2.128	7.12	0.00	1.5	98.5	0.0	3.15	0.91	0.85	0.83	2.19	9555	643	8	0	0	0	4768	logfile

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