Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UZU	26918	2022-12-11	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.96	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.002	0.48	0.0	0.03	17.63	0.00	2.121	4.92	1.03	3.5	96.5	0.0	2.86	0.19	0.58	0.87	5.61	7399	483	4	0	0	79	3655	logfile
✔	7oo8	13007	2022-12-13	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.003	0.48	0.0	0.04	14.96	0.00	2.291	10.06	0.27	1.2	98.8	0.0	2.49	0.46	0.65	0.79	2.25	13923	1827	7	0	0	0	0	logfile
✔	7MQF	23945	2022-12-15	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.47	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.44	0.00	2.256	3.06	0.00	1.0	99.0	0.0	1.02	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7USW	26741	2022-12-13	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	15.89	0.01	2.254	7.16	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.03	0.00	2.253	5.38	0.41	3.1	96.9	0.0	2.30	0.25	0.63	0.83	2.06	14322	1676	12	0	68	0	0	logfile
✔	7oZV	13138	2022-12-12	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.29	0.01	2.202	8.59	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.003	0.48	0.0	0.04	15.36	0.00	2.139	8.29	0.00	2.3	97.7	0.0	-0.10	1.89	0.72	0.83	2.74	8409	991	6	22	2	0	0	logfile
✔	7YQC	34023	2022-12-12	2022-08-06	2.82	2.99	2.80	3.0	0.013	1.86	24.0	0.13	16.60	0.01	2.497	5.68	9.34	1.3	98.7	0.0	3.07	0.65	0.81	2.22	3.0	0.003	0.48	0.0	0.04	17.66	0.00	2.284	6.24	3.86	1.3	98.7	0.0	3.57	0.49	0.64	0.82	2.18	11396	1386	7	0	0	0	0	logfile
✔	7ZW1	14991	2022-12-12	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	4.0	0.002	0.48	0.0	0.03	17.37	0.00	2.034	8.22	0.32	2.3	97.7	0.0	3.27	0.70	0.65	0.79	1.44	11807	760	3	0	0	0	5883	logfile
✔	7oo0	13003	2022-12-13	2021-05-26	3.1	3.05	2.96	3.1	0.012	1.13	0.0	0.07	12.80	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.003	0.48	0.0	0.04	13.87	0.00	2.313	6.05	0.00	1.5	98.5	0.0	1.59	1.54	0.61	0.79	2.28	16016	1834	14	0	56	0	0	logfile
✔	7NKQ	12446	2022-12-12	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.76	0.00	2.010	7.06	0.87	2.3	97.7	0.0	2.24	0.31	0.82	0.84	2.58	10621	714	8	0	0	0	5312	logfile
✔	6XKY	22229	2022-12-20	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.87	2.05	3.2	0.004	0.49	0.0	0.03	14.28	0.00	2.145	4.55	0.33	1.9	98.1	0.0	3.67	0.50	0.52	0.89	1.91	38760	5420	20	0	0	0	0	logfile
✔	7TiK	25912	2022-12-11	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.81	1.38	2565	339	6	0	0	0	0	logfile
✔	7oCA	12802	2022-12-16	2021-04-26	3.4	3.03	—	3.2	0.009	0.95	0.0	0.04	14.76	0.00	2.080	4.67	0.15	3.5	96.5	0.0	0.20	0.72	0.80	3.80	3.1	0.003	0.49	0.0	0.04	15.33	0.00	2.230	4.88	0.23	1.8	98.2	0.0	1.52	0.44	0.75	0.85	3.24	29294	3802	22	0	72	0	0	logfile
✔	8DK2	27481	2022-12-15	2022-07-01	4.1	4.81	4.17	4.1	0.002	0.47	0.0	0.04	13.54	0.00	1.988	7.74	2.88	3.7	96.3	0.0	2.05	0.84	0.80	—	4.1	0.002	0.49	0.0	0.04	14.04	0.00	2.028	7.44	0.00	3.7	96.3	0.0	2.10	0.60	0.84	0.80	—	23727	2840	12	52	4	0	0	logfile
✔	7NG9	12310	2022-12-14	2021-02-08	3.3	3.48	3.33	3.5	0.007	0.48	0.0	0.04	14.72	0.00	2.250	4.23	0.85	3.6	96.4	0.0	-0.87	0.62	0.80	4.09	3.5	0.003	0.49	0.0	0.03	15.82	0.00	2.122	6.92	0.09	2.5	97.5	0.0	2.16	2.59	0.68	0.85	3.35	19368	1263	3	0	0	0	9615	logfile
✔	7P0Z	13153	2022-12-13	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.53	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.003	0.49	0.0	0.03	18.16	0.00	2.229	4.53	1.64	0.8	99.2	0.0	5.38	0.54	0.84	0.87	2.25	12873	1652	7	0	0	0	0	logfile
✔	7UY6	26865	2022-12-14	2022-05-06	2.9	2.49	2.94	3.0	0.002	0.44	0.0	0.04	15.88	0.00	2.215	4.02	0.06	1.7	98.3	0.0	1.19	0.70	0.81	3.09	2.9	0.002	0.49	0.0	0.04	17.81	0.00	2.211	5.06	1.57	2.1	97.8	0.1	1.40	1.18	0.70	0.83	2.63	18746	1847	9	170	1	0	0	logfile
✔	8DEU	27399	2022-12-16	2022-06-21	2.95	3.22	3.03	3.1	0.006	0.97	0.0	0.05	15.77	0.00	2.211	14.97	3.07	4.7	95.3	0.0	-1.69	0.68	0.83	2.50	3.2	0.003	0.49	0.0	0.04	16.73	0.00	2.032	15.83	3.99	3.3	96.7	0.0	1.28	2.32	0.69	0.85	2.29	29088	3130	7	0	27	0	4959	logfile
✔	6U5P	20652	2022-12-13	2019-08-28	3.3	3.44	—	3.4	0.006	0.75	0.0	0.05	14.37	0.00	2.236	3.96	0.43	4.4	95.6	0.0	-3.37	0.70	0.83	2.56	3.4	0.002	0.49	0.0	0.05	16.15	0.00	2.100	5.40	0.50	2.8	97.2	0.0	0.25	0.46	0.65	0.83	2.09	13308	1776	24	0	24	8	0	logfile
✔	8CYA	27072	2022-12-12	2022-05-23	2.7	3.50	2.73	3.0	0.002	0.44	0.0	0.04	11.93	0.00	1.935	6.86	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.003	0.49	0.0	0.04	13.01	0.00	1.985	10.09	0.44	5.0	94.9	0.2	0.12	0.39	0.85	0.79	2.18	57833	3681	29	0	88	0	27935	logfile
✔	6ZBJ	11156	2022-12-20	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.7	0.002	0.49	0.0	0.03	15.19	0.00	2.052	3.24	0.00	0.6	99.4	0.0	3.74	1.29	0.87	0.82	1.11	39212	2334	4	0	0	0	19864	logfile

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