Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MU1	9243	2022-12-22	2018-10-22	4.1	4.75	—	6.9	0.013	2.21	146.0	0.16	14.61	0.01	1.066	79.28	16.69	12.1	85.0	2.9	-0.62	0.71	0.66	—	6.9	0.003	0.84	0.0	0.05	11.85	0.00	2.125	17.90	0.03	11.5	87.9	0.6	-0.66	1.02	0.71	0.68	—	50164	8596	8	0	4	0	0	logfile
✔	6CU7	7618	2022-12-11	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	17.37	0.71	13.1	86.9	0.0	-4.59	1.76	0.38	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	6MUo	9250	2022-12-13	2018-10-23	3.6	4.56	—	4.5	0.008	0.95	0.0	0.05	26.19	0.01	2.077	6.89	0.48	7.8	92.2	0.0	-6.10	0.64	0.68	1.87	4.5	0.004	0.69	0.0	0.04	27.52	0.00	2.075	12.53	0.96	6.6	93.4	0.0	-1.52	0.83	0.68	0.75	0.68	14015	1006	13	294	0	0	0	logfile
✔	5YRN	6842	2022-12-12	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.8	0.004	0.89	0.0	0.05	14.67	0.00	2.067	25.63	0.11	3.7	96.3	0.0	-0.69	2.92	0.64	0.80	—	8280	1044	12	0	0	0	0	logfile
✔	6oSJ	20183	2022-12-11	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.51	0.79	4.30	4210	610	10	0	0	0	0	logfile
✔	6TZ2	20587	2022-12-13	2019-08-09	3.5	3.68	—	3.6	0.009	0.95	0.0	0.05	11.67	0.01	2.073	5.21	0.47	5.3	94.6	0.1	-3.55	0.40	0.85	3.02	3.6	0.003	0.61	0.0	0.04	15.54	0.00	1.860	10.58	0.81	4.3	95.7	0.0	-0.07	0.67	0.41	0.86	2.11	15608	1709	6	90	4	0	0	logfile
✔	6GJ1	0009	2022-12-13	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.54	0.01	2.091	23.54	0.07	17.5	82.4	0.1	-3.80	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	3iZK	5247	2022-12-12	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.79	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.73	0.0	0.04	13.13	0.00	2.198	24.93	0.00	3.7	96.3	0.0	-0.25	1.99	0.82	0.76	—	58448	7856	16	0	0	0	0	logfile
✔	6MAT	9063	2022-12-15	2018-08-28	4.5	4.61	—	4.5	0.012	1.80	9.0	0.11	18.41	0.01	2.397	2.83	2.79	6.4	91.6	2.0	-1.24	0.77	0.69	—	4.5	0.003	0.71	0.0	0.04	15.68	0.01	2.104	12.74	0.00	5.6	94.3	0.1	0.69	1.86	0.81	0.78	—	27030	3448	13	0	38	0	0	logfile
✔	6C6L	7348	2022-12-14	2018-01-19	3.5	4.12	4.07	4.1	0.006	1.03	0.0	0.06	11.47	0.01	2.224	4.44	0.34	2.5	97.5	0.0	-4.23	0.64	0.76	2.09	4.1	0.003	0.74	0.0	0.04	15.30	0.00	2.147	11.19	0.60	3.1	96.9	0.0	-0.19	1.43	0.67	0.77	0.81	22110	2918	15	0	0	0	0	logfile
✔	6PQX	20455	2022-12-12	2019-07-10	4.6	4.84	—	4.7	0.006	0.99	0.0	0.06	23.23	0.01	2.222	16.17	2.35	5.2	94.1	0.6	-3.41	0.78	0.79	—	4.7	0.003	0.67	0.0	0.04	22.82	0.00	2.137	15.91	0.00	5.9	93.9	0.2	-1.69	1.66	0.76	0.76	—	10116	960	10	120	4	0	0	logfile
✔	6iJo	9680	2022-12-22	2018-10-10	3.3	3.39	—	3.3	0.020	2.09	0.0	0.26	19.24	0.01	2.074	9.64	0.41	7.6	92.4	0.0	-4.92	0.65	0.79	3.27	3.3	0.003	0.95	0.0	0.06	18.93	0.00	2.102	19.29	0.32	6.1	93.9	0.0	-0.52	1.91	0.67	0.82	2.36	49685	4382	41	0	333	0	0	logfile
✔	6N9Y	0383	2022-12-11	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	5.13	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.57	0.00	2.155	14.28	0.00	8.9	91.1	0.0	-1.04	1.76	0.40	0.78	—	4527	552	1	0	0	0	0	logfile
✔	6iJJ	9678	2022-12-21	2018-10-10	2.89	3.01	—	3.0	0.020	2.03	0.0	0.25	19.30	0.01	2.060	9.64	0.42	6.5	93.3	0.1	-3.85	0.74	0.84	3.94	3.0	0.003	0.95	0.0	0.06	19.42	0.01	2.084	18.05	2.65	5.3	94.7	0.0	-0.16	0.54	0.75	0.87	3.04	44968	3889	33	0	299	0	0	logfile
✔	5ZYA	6915	2022-12-13	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.13	0.01	1.673	8.56	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.004	0.93	0.0	0.06	15.42	0.00	2.068	17.86	0.54	7.2	92.8	0.0	-2.06	1.81	0.77	0.72	1.15	16957	2143	7	0	5	0	0	logfile
✔	6NF4	9360	2022-12-11	2018-12-18	2.98	3.35	—	3.3	0.009	1.09	0.0	0.07	13.64	0.01	2.379	2.48	0.27	3.2	96.8	0.0	0.16	0.69	0.84	3.04	3.3	0.003	0.61	0.0	0.04	16.13	0.00	2.203	6.09	0.81	4.4	95.6	0.0	3.62	1.15	0.57	0.83	1.79	6960	842	4	0	8	0	0	logfile
✔	5XMK	6734	2022-12-14	2017-05-15	4.18	4.25	—	4.2	0.010	1.55	12.0	0.09	13.66	0.01	2.230	4.68	1.17	5.0	93.3	1.7	-0.92	0.67	0.68	—	4.2	0.007	0.99	0.0	0.05	13.82	0.01	2.077	31.03	0.00	7.6	92.2	0.3	-0.38	2.66	0.72	0.75	—	18017	2298	19	0	5	0	0	logfile
✔	6iFK	9653	2022-12-14	2018-09-20	3.2	3.32	—	3.3	0.009	1.20	1.0	0.06	12.74	0.01	2.046	6.33	1.01	10.7	89.0	0.3	-4.87	0.74	0.82	3.58	3.3	0.004	0.69	0.0	0.04	16.15	0.00	1.917	13.03	0.42	10.5	89.5	0.0	-2.09	0.70	0.76	0.85	2.82	19448	2256	11	67	5	0	0	logfile
✔	6MHU	9118	2022-12-12	2018-09-18	4.0	3.93	—	3.9	0.010	1.24	0.0	0.24	12.04	0.01	2.267	6.82	0.76	10.9	89.1	0.0	-4.84	0.53	0.72	—	3.9	0.003	0.94	0.0	0.10	16.28	0.00	2.162	15.37	0.54	7.1	92.9	0.0	-1.56	1.50	0.53	0.73	—	8810	1112	5	0	1	0	0	logfile
✔	6JNX	9852	2022-12-16	2019-03-18	4.08	4.16	—	4.1	0.012	1.23	0.0	0.06	16.11	0.01	1.858	11.45	0.90	7.7	92.0	0.3	-3.99	0.61	0.68	—	4.1	0.004	0.74	0.0	0.04	16.79	0.00	1.925	11.53	0.03	7.1	92.8	0.1	-0.87	1.62	0.70	0.80	—	32639	3771	12	144	3	0	0	logfile

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