Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y35	33588	2023-11-14	2022-06-09	2.9	2.79	2.85	3.0	0.014	0.80	0.0	0.05	12.99	0.01	2.217	5.09	0.10	4.0	96.0	0.0	-1.37	0.84	0.82	3.23	3.0	0.003	0.75	0.0	0.04	16.93	0.00	2.164	10.13	2.74	3.5	96.5	0.0	0.68	1.30	0.85	0.85	2.68	9191	1150	6	0	1	0	0	logfile
✔	7ZLA	14778	2023-11-14	2022-04-14	3.99	4.22	3.89	4.1	0.007	0.86	0.0	0.05	21.49	0.01	2.198	18.63	0.00	6.9	93.1	0.0	-1.94	0.71	0.67	0.80	4.1	0.004	0.67	0.0	0.04	22.53	0.00	2.113	13.69	0.55	6.9	93.0	0.1	-1.13	0.52	0.71	0.67	1.22	8624	822	4	92	0	0	0	logfile
✔	8DK5	27483	2023-11-16	2022-07-02	2.71	3.29	2.87	3.2	0.011	1.11	3.0	0.07	27.53	0.01	2.088	9.15	0.39	4.6	95.3	0.2	-0.97	0.74	0.79	3.50	3.2	0.003	0.61	0.0	0.04	27.79	0.00	2.177	7.75	2.25	4.1	95.9	0.0	1.41	1.59	0.69	0.77	3.31	15618	1210	12	298	0	0	0	logfile
✔	8H0P	34413	2023-11-14	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.004	0.63	0.0	0.04	13.57	0.00	2.018	12.42	0.10	2.8	97.2	0.0	-0.20	1.36	0.57	0.79	2.58	8932	1137	6	0	0	0	0	logfile
✔	8GS8	34225	2023-11-14	2022-09-05	2.86	3.07	2.83	3.1	0.032	1.67	0.0	0.52	14.56	0.01	2.168	12.06	0.67	7.9	92.1	0.1	-4.22	0.62	0.84	3.93	3.1	0.003	1.06	0.0	0.06	15.94	0.00	1.797	9.15	0.78	2.3	97.7	0.0	0.74	1.11	0.60	0.85	3.56	8637	1090	8	0	7	0	0	logfile
✔	8JWG	36682	2023-11-14	2023-06-29	3.54	4.16	3.72	4.0	0.005	0.72	0.0	0.04	9.34	0.00	2.223	2.05	0.00	7.9	92.1	0.0	-3.71	0.68	0.71	1.76	4.0	0.003	0.65	0.0	0.04	14.40	0.00	2.155	9.80	0.19	7.4	92.6	0.0	-0.97	0.93	0.69	0.75	0.88	9620	1192	2	0	1	0	0	logfile
✔	8iUL	35725	2023-11-14	2023-03-24	2.78	2.69	2.88	3.1	0.006	0.66	1.0	0.06	9.08	0.01	2.116	6.02	0.61	1.4	98.6	0.0	-1.10	0.58	0.73	2.87	3.1	0.003	0.60	0.0	0.04	15.37	0.00	2.088	7.58	2.85	2.3	97.6	0.1	1.15	0.82	0.62	0.85	3.07	9016	1147	5	0	1	0	0	logfile
✔	7YEH	33773	2023-11-17	2022-07-05	3.92	4.33	3.78	3.9	0.006	1.00	0.0	0.05	16.65	0.01	2.011	28.89	5.09	7.7	92.3	0.0	-1.15	0.87	0.79	0.84	3.9	0.003	0.70	0.0	0.04	15.97	0.00	2.104	18.83	0.05	5.7	94.3	0.0	-0.05	1.05	0.87	0.81	0.72	19122	2419	5	1	1	0	0	logfile
✔	8CL4	16712	2023-11-17	2023-02-16	3.14	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.53	0.78	2.49	3.6	0.003	0.68	0.0	0.04	16.83	0.00	2.207	10.69	0.14	1.7	98.3	0.0	1.32	2.42	0.55	0.82	1.20	13335	1725	15	0	0	0	0	logfile
✔	8FR6	29396	2023-11-18	2023-01-06	2.5	3.15	2.54	2.9	0.005	0.79	0.0	0.05	16.60	0.00	2.125	3.16	0.98	2.5	97.5	0.0	0.44	0.80	0.79	3.20	2.9	0.005	0.69	0.0	0.04	17.25	0.00	2.133	7.92	2.20	3.3	96.7	0.0	0.58	0.47	0.80	0.86	3.41	21237	2448	60	0	159	0	0	logfile
✔	8DFP	27410	2023-11-16	2022-06-22	3.17	3.73	3.15	3.4	0.008	1.13	0.0	0.07	12.18	0.01	2.429	1.23	0.00	1.5	98.5	0.0	-0.93	0.84	0.79	3.52	3.5	0.003	0.58	0.0	0.04	12.43	0.00	1.974	4.00	0.00	2.5	97.5	0.0	0.46	0.57	0.85	0.82	3.57	16124	1118	10	0	10	0	7703	logfile
✔	8ENE	28271	2023-11-16	2022-09-29	2.64	3.16	2.81	3.1	0.005	0.60	0.0	0.04	11.37	0.00	2.262	5.76	2.15	2.6	97.4	0.0	0.46	0.74	0.77	2.90	3.1	0.004	0.55	0.0	0.04	16.15	0.00	2.203	8.13	3.68	3.6	96.4	0.0	0.21	1.61	0.61	0.74	2.80	15404	1972	8	0	4	0	0	logfile
✔	7ZW6	14993	2023-11-14	2022-05-18	3.7	3.96	3.76	3.7	0.003	0.53	0.0	0.04	16.90	0.00	1.934	8.56	0.31	2.7	97.3	0.0	2.29	0.78	0.59	0.31	3.7	0.002	0.51	0.0	0.04	17.93	0.00	1.920	55.57	0.33	3.2	96.8	0.0	2.03	1.98	0.83	0.72	0.56	57112	6344	8	0	0	0	6176	logfile
✔	8EKY	28217	2023-11-20	2022-09-22	3.47	4.00	3.78	3.9	0.004	0.68	1.0	0.05	14.66	0.00	2.211	6.02	0.00	3.2	96.8	0.1	-0.33	0.76	0.83	3.13	3.9	0.005	0.66	0.0	0.05	16.60	0.00	2.160	10.22	0.25	4.5	95.5	0.0	-0.14	1.14	0.76	0.85	2.99	14605	1815	11	0	0	0	0	logfile
✔	8i9R	35281	2023-11-16	2023-02-07	3.1	3.01	3.08	3.0	0.005	0.86	1.0	0.05	17.06	0.01	2.123	6.28	1.07	4.1	95.8	0.1	-2.59	0.70	0.74	2.37	3.0	0.003	0.59	0.0	0.04	16.70	0.00	2.046	9.58	0.24	3.9	96.1	0.1	0.60	1.21	0.78	0.82	2.36	117417	8820	52	2395	3	0	0	logfile
✔	8F7A	28899	2023-11-15	2022-11-18	3.78	4.00	3.84	3.9	0.005	0.69	0.0	0.04	15.31	0.00	1.085	12.19	11.80	5.9	93.9	0.1	-2.21	0.69	0.72	0.70	3.9	0.003	0.79	0.0	0.04	16.21	0.00	1.947	14.12	0.41	5.1	94.9	0.0	-0.07	1.12	0.74	0.82	1.58	6742	852	2	0	2	0	0	logfile
✔	8FFK	29045	2023-11-18	2022-12-08	2.82	3.10	2.93	3.1	0.004	0.56	0.0	0.04	10.75	0.00	2.195	7.52	2.19	1.2	98.8	0.0	1.77	0.59	0.76	3.68	3.0	0.003	0.57	0.0	0.04	14.93	0.00	2.040	8.03	2.23	1.3	98.7	0.0	1.89	0.51	0.73	0.87	2.92	23482	3098	3	0	0	0	0	logfile
✔	8CL3	16711	2023-11-15	2023-02-16	3.14	3.51	3.07	3.5	0.005	0.97	0.0	0.13	12.73	0.01	0.985	10.68	0.00	0.9	99.1	0.0	-1.02	0.59	0.70	2.88	3.5	0.003	0.56	0.0	0.04	16.03	0.00	2.337	7.97	0.00	0.8	99.2	0.0	1.66	0.56	0.46	0.65	2.74	10272	1350	12	0	0	0	0	logfile
✔	8Si3	40497	2023-11-19	2023-04-14	2.61	2.82	2.75	2.9	0.009	1.18	0.0	0.05	18.76	0.01	1.981	4.43	0.41	8.7	90.7	0.6	-5.14	0.58	0.74	4.13	2.9	0.004	0.62	0.0	0.04	17.63	0.00	1.901	14.57	1.53	7.6	92.3	0.2	-0.58	1.44	0.63	0.83	3.49	74749	4420	12	0	61	160	36136	logfile
✔	8HED	34688	2023-11-13	2022-11-08	3.59	4.08	3.68	3.9	0.004	0.67	0.0	0.04	13.94	0.00	2.247	6.94	0.00	6.7	93.1	0.2	-0.46	0.77	0.83	2.95	3.9	0.003	0.66	0.0	0.04	14.87	0.00	2.231	7.25	0.00	7.1	92.6	0.2	-0.71	0.44	0.77	0.84	2.46	3318	427	5	0	3	0	0	logfile

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