The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Y35 | 33588 | 2023-11-14 | 2022-06-09 | 2.9 | 2.79 | 2.85 | 3.0 | 0.014 | 0.80 | 0.0 | 0.05 | 12.99 | 0.01 | 2.217 | 5.09 | 0.10 | 4.0 | 96.0 | 0.0 | -1.37 | 0.84 | 0.82 | 3.23 | 3.0 | 0.003 | 0.75 | 0.0 | 0.04 | 16.93 | 0.00 | 2.164 | 10.13 | 2.74 | 3.5 | 96.5 | 0.0 | 0.68 | 1.30 | 0.85 | 0.85 | 2.68 | 9191 | 1150 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7ZLA | 14778 | 2023-11-14 | 2022-04-14 | 3.99 | 4.22 | 3.89 | 4.1 | 0.007 | 0.86 | 0.0 | 0.05 | 21.49 | 0.01 | 2.198 | 18.63 | 0.00 | 6.9 | 93.1 | 0.0 | -1.94 | 0.71 | 0.67 | 0.80 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 22.53 | 0.00 | 2.113 | 13.69 | 0.55 | 6.9 | 93.0 | 0.1 | -1.13 | 0.52 | 0.71 | 0.67 | 1.22 | 8624 | 822 | 4 | 92 | 0 | 0 | 0 | logfile |
✔ | 8DK5 | 27483 | 2023-11-16 | 2022-07-02 | 2.71 | 3.29 | 2.87 | 3.2 | 0.011 | 1.11 | 3.0 | 0.07 | 27.53 | 0.01 | 2.088 | 9.15 | 0.39 | 4.6 | 95.3 | 0.2 | -0.97 | 0.74 | 0.79 | 3.50 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 27.79 | 0.00 | 2.177 | 7.75 | 2.25 | 4.1 | 95.9 | 0.0 | 1.41 | 1.59 | 0.69 | 0.77 | 3.31 | 15618 | 1210 | 12 | 298 | 0 | 0 | 0 | logfile |
✔ | 8H0P | 34413 | 2023-11-14 | 2022-09-30 | 3.15 | 2.98 | 3.14 | 3.2 | 0.001 | 0.40 | 0.0 | 0.04 | 7.54 | 0.00 | 2.208 | 5.68 | 0.10 | 1.2 | 98.8 | 0.0 | -2.49 | 0.52 | 0.65 | 1.60 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 13.57 | 0.00 | 2.018 | 12.42 | 0.10 | 2.8 | 97.2 | 0.0 | -0.20 | 1.36 | 0.57 | 0.79 | 2.58 | 8932 | 1137 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GS8 | 34225 | 2023-11-14 | 2022-09-05 | 2.86 | 3.07 | 2.83 | 3.1 | 0.032 | 1.67 | 0.0 | 0.52 | 14.56 | 0.01 | 2.168 | 12.06 | 0.67 | 7.9 | 92.1 | 0.1 | -4.22 | 0.62 | 0.84 | 3.93 | 3.1 | 0.003 | 1.06 | 0.0 | 0.06 | 15.94 | 0.00 | 1.797 | 9.15 | 0.78 | 2.3 | 97.7 | 0.0 | 0.74 | 1.11 | 0.60 | 0.85 | 3.56 | 8637 | 1090 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 8JWG | 36682 | 2023-11-14 | 2023-06-29 | 3.54 | 4.16 | 3.72 | 4.0 | 0.005 | 0.72 | 0.0 | 0.04 | 9.34 | 0.00 | 2.223 | 2.05 | 0.00 | 7.9 | 92.1 | 0.0 | -3.71 | 0.68 | 0.71 | 1.76 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 14.40 | 0.00 | 2.155 | 9.80 | 0.19 | 7.4 | 92.6 | 0.0 | -0.97 | 0.93 | 0.69 | 0.75 | 0.88 | 9620 | 1192 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8iUL | 35725 | 2023-11-14 | 2023-03-24 | 2.78 | 2.69 | 2.88 | 3.1 | 0.006 | 0.66 | 1.0 | 0.06 | 9.08 | 0.01 | 2.116 | 6.02 | 0.61 | 1.4 | 98.6 | 0.0 | -1.10 | 0.58 | 0.73 | 2.87 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.37 | 0.00 | 2.088 | 7.58 | 2.85 | 2.3 | 97.6 | 0.1 | 1.15 | 0.82 | 0.62 | 0.85 | 3.07 | 9016 | 1147 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YEH | 33773 | 2023-11-17 | 2022-07-05 | 3.92 | 4.33 | 3.78 | 3.9 | 0.006 | 1.00 | 0.0 | 0.05 | 16.65 | 0.01 | 2.011 | 28.89 | 5.09 | 7.7 | 92.3 | 0.0 | -1.15 | 0.87 | 0.79 | 0.84 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 15.97 | 0.00 | 2.104 | 18.83 | 0.05 | 5.7 | 94.3 | 0.0 | -0.05 | 1.05 | 0.87 | 0.81 | 0.72 | 19122 | 2419 | 5 | 1 | 1 | 0 | 0 | logfile |
✔ | 8CL4 | 16712 | 2023-11-17 | 2023-02-16 | 3.14 | 3.69 | 3.44 | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 12.07 | 0.01 | 2.192 | 3.59 | 0.00 | 0.0 | 100.0 | 0.0 | -0.83 | 0.53 | 0.78 | 2.49 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 16.83 | 0.00 | 2.207 | 10.69 | 0.14 | 1.7 | 98.3 | 0.0 | 1.32 | 2.42 | 0.55 | 0.82 | 1.20 | 13335 | 1725 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FR6 | 29396 | 2023-11-18 | 2023-01-06 | 2.5 | 3.15 | 2.54 | 2.9 | 0.005 | 0.79 | 0.0 | 0.05 | 16.60 | 0.00 | 2.125 | 3.16 | 0.98 | 2.5 | 97.5 | 0.0 | 0.44 | 0.80 | 0.79 | 3.20 | 2.9 | 0.005 | 0.69 | 0.0 | 0.04 | 17.25 | 0.00 | 2.133 | 7.92 | 2.20 | 3.3 | 96.7 | 0.0 | 0.58 | 0.47 | 0.80 | 0.86 | 3.41 | 21237 | 2448 | 60 | 0 | 159 | 0 | 0 | logfile |
✔ | 8DFP | 27410 | 2023-11-16 | 2022-06-22 | 3.17 | 3.73 | 3.15 | 3.4 | 0.008 | 1.13 | 0.0 | 0.07 | 12.18 | 0.01 | 2.429 | 1.23 | 0.00 | 1.5 | 98.5 | 0.0 | -0.93 | 0.84 | 0.79 | 3.52 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 12.43 | 0.00 | 1.974 | 4.00 | 0.00 | 2.5 | 97.5 | 0.0 | 0.46 | 0.57 | 0.85 | 0.82 | 3.57 | 16124 | 1118 | 10 | 0 | 10 | 0 | 7703 | logfile |
✔ | 8ENE | 28271 | 2023-11-16 | 2022-09-29 | 2.64 | 3.16 | 2.81 | 3.1 | 0.005 | 0.60 | 0.0 | 0.04 | 11.37 | 0.00 | 2.262 | 5.76 | 2.15 | 2.6 | 97.4 | 0.0 | 0.46 | 0.74 | 0.77 | 2.90 | 3.1 | 0.004 | 0.55 | 0.0 | 0.04 | 16.15 | 0.00 | 2.203 | 8.13 | 3.68 | 3.6 | 96.4 | 0.0 | 0.21 | 1.61 | 0.61 | 0.74 | 2.80 | 15404 | 1972 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7ZW6 | 14993 | 2023-11-14 | 2022-05-18 | 3.7 | 3.96 | 3.76 | 3.7 | 0.003 | 0.53 | 0.0 | 0.04 | 16.90 | 0.00 | 1.934 | 8.56 | 0.31 | 2.7 | 97.3 | 0.0 | 2.29 | 0.78 | 0.59 | 0.31 | 3.7 | 0.002 | 0.51 | 0.0 | 0.04 | 17.93 | 0.00 | 1.920 | 55.57 | 0.33 | 3.2 | 96.8 | 0.0 | 2.03 | 1.98 | 0.83 | 0.72 | 0.56 | 57112 | 6344 | 8 | 0 | 0 | 0 | 6176 | logfile |
✔ | 8EKY | 28217 | 2023-11-20 | 2022-09-22 | 3.47 | 4.00 | 3.78 | 3.9 | 0.004 | 0.68 | 1.0 | 0.05 | 14.66 | 0.00 | 2.211 | 6.02 | 0.00 | 3.2 | 96.8 | 0.1 | -0.33 | 0.76 | 0.83 | 3.13 | 3.9 | 0.005 | 0.66 | 0.0 | 0.05 | 16.60 | 0.00 | 2.160 | 10.22 | 0.25 | 4.5 | 95.5 | 0.0 | -0.14 | 1.14 | 0.76 | 0.85 | 2.99 | 14605 | 1815 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i9R | 35281 | 2023-11-16 | 2023-02-07 | 3.1 | 3.01 | 3.08 | 3.0 | 0.005 | 0.86 | 1.0 | 0.05 | 17.06 | 0.01 | 2.123 | 6.28 | 1.07 | 4.1 | 95.8 | 0.1 | -2.59 | 0.70 | 0.74 | 2.37 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.70 | 0.00 | 2.046 | 9.58 | 0.24 | 3.9 | 96.1 | 0.1 | 0.60 | 1.21 | 0.78 | 0.82 | 2.36 | 117417 | 8820 | 52 | 2395 | 3 | 0 | 0 | logfile |
✔ | 8F7A | 28899 | 2023-11-15 | 2022-11-18 | 3.78 | 4.00 | 3.84 | 3.9 | 0.005 | 0.69 | 0.0 | 0.04 | 15.31 | 0.00 | 1.085 | 12.19 | 11.80 | 5.9 | 93.9 | 0.1 | -2.21 | 0.69 | 0.72 | 0.70 | 3.9 | 0.003 | 0.79 | 0.0 | 0.04 | 16.21 | 0.00 | 1.947 | 14.12 | 0.41 | 5.1 | 94.9 | 0.0 | -0.07 | 1.12 | 0.74 | 0.82 | 1.58 | 6742 | 852 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 8FFK | 29045 | 2023-11-18 | 2022-12-08 | 2.82 | 3.10 | 2.93 | 3.1 | 0.004 | 0.56 | 0.0 | 0.04 | 10.75 | 0.00 | 2.195 | 7.52 | 2.19 | 1.2 | 98.8 | 0.0 | 1.77 | 0.59 | 0.76 | 3.68 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.93 | 0.00 | 2.040 | 8.03 | 2.23 | 1.3 | 98.7 | 0.0 | 1.89 | 0.51 | 0.73 | 0.87 | 2.92 | 23482 | 3098 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL3 | 16711 | 2023-11-15 | 2023-02-16 | 3.14 | 3.51 | 3.07 | 3.5 | 0.005 | 0.97 | 0.0 | 0.13 | 12.73 | 0.01 | 0.985 | 10.68 | 0.00 | 0.9 | 99.1 | 0.0 | -1.02 | 0.59 | 0.70 | 2.88 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 16.03 | 0.00 | 2.337 | 7.97 | 0.00 | 0.8 | 99.2 | 0.0 | 1.66 | 0.56 | 0.46 | 0.65 | 2.74 | 10272 | 1350 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Si3 | 40497 | 2023-11-19 | 2023-04-14 | 2.61 | 2.82 | 2.75 | 2.9 | 0.009 | 1.18 | 0.0 | 0.05 | 18.76 | 0.01 | 1.981 | 4.43 | 0.41 | 8.7 | 90.7 | 0.6 | -5.14 | 0.58 | 0.74 | 4.13 | 2.9 | 0.004 | 0.62 | 0.0 | 0.04 | 17.63 | 0.00 | 1.901 | 14.57 | 1.53 | 7.6 | 92.3 | 0.2 | -0.58 | 1.44 | 0.63 | 0.83 | 3.49 | 74749 | 4420 | 12 | 0 | 61 | 160 | 36136 | logfile |
✔ | 8HED | 34688 | 2023-11-13 | 2022-11-08 | 3.59 | 4.08 | 3.68 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 13.94 | 0.00 | 2.247 | 6.94 | 0.00 | 6.7 | 93.1 | 0.2 | -0.46 | 0.77 | 0.83 | 2.95 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 14.87 | 0.00 | 2.231 | 7.25 | 0.00 | 7.1 | 92.6 | 0.2 | -0.71 | 0.44 | 0.77 | 0.84 | 2.46 | 3318 | 427 | 5 | 0 | 3 | 0 | 0 | logfile |