Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3LoS	5137	2023-11-15	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	7BZX	30262	2023-11-13	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6EZo	4162	2023-11-17	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.008	0.97	0.0	0.05	10.23	0.01	1.979	9.01	0.00	23.2	76.5	0.3	-4.02	0.46	0.78	0.78	—	18758	3367	11	0	1	0	0	logfile
✔	7M62	23687	2023-11-13	2021-03-25	3.9	3.91	—	4.3	0.065	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.2	0.003	0.95	0.0	0.05	15.86	0.00	2.112	24.41	0.00	23.0	77.0	0.0	-4.78	2.77	0.57	0.65	3.88	2380	320	10	0	10	0	0	logfile
✔	6TNG	10532	2023-11-14	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.85	0.0	0.00	6.39	0.00	2.200	10.87	0.00	22.8	77.1	0.1	-3.08	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6DJP	7939	2023-11-14	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	4.72	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.16	0.01	2.172	17.74	0.00	22.8	77.2	0.1	-4.06	1.20	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	7DWV	30887	2023-11-13	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.72	0.0	0.05	17.18	0.00	2.182	17.15	1.19	22.4	77.6	0.0	-6.08	1.50	0.41	0.75	2.54	2064	258	6	0	0	0	0	logfile
✔	3J2P	5499	2023-11-14	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.56	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.84	0.00	1.911	69.53	1.47	18.7	77.9	3.4	-4.26	0.93	0.38	0.72	0.85	9890	1134	8	0	6	0	1086	logfile
✔	5G2X	3331	2023-11-17	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.006	0.93	0.0	0.04	19.63	0.01	1.935	41.01	0.91	20.6	78.2	1.3	-4.93	2.35	0.80	0.66	0.49	19072	487	3	704	0	0	0	logfile
✔	7YR7	34048	2023-11-13	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	21.39	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.005	0.85	0.0	0.04	21.04	0.01	2.101	22.72	1.09	21.7	78.3	0.0	-3.50	1.49	0.67	0.66	0.71	5102	330	7	118	0	0	0	logfile
✔	7DA4	30622	2023-11-13	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.94	0.0	0.04	10.84	0.00	2.229	17.17	0.00	21.7	78.3	0.0	-5.61	3.07	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	6ZYD	11557	2023-11-21	2020-07-31	3.0	3.62	2.76	3.4	0.017	1.20	0.0	0.12	17.41	0.01	2.269	4.88	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.059	2.56	0.0	0.17	18.86	0.02	1.731	57.41	12.94	21.7	78.3	0.0	-6.09	1.47	0.79	0.86	3.23	31423	1792	14	0	476	0	14490	logfile
✔	6TNF	10531	2023-11-14	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	18.93	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.006	1.19	0.0	0.10	15.66	0.01	2.088	17.70	0.00	21.3	78.6	0.1	-4.12	0.55	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	7YR6	34047	2023-11-13	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	20.67	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.003	0.72	0.0	0.04	20.88	0.01	2.174	30.49	0.00	21.2	78.8	0.0	-5.04	0.77	0.82	0.80	—	4248	220	5	118	0	0	0	logfile
✔	6GTD	0062	2023-11-13	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.006	0.87	0.0	0.06	20.34	0.00	1.987	21.68	0.00	20.9	79.1	0.0	-3.16	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	7NNH	12477	2023-11-13	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.004	1.05	0.0	0.05	16.94	0.00	2.081	31.82	0.68	20.6	79.1	0.3	-2.70	1.09	0.75	0.80	—	5299	637	1	0	0	0	0	logfile
✔	6ZRQ	11382	2023-11-13	2020-07-14	3.9	4.06	—	4.2	0.014	1.45	0.0	0.05	14.33	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.75	0.0	0.05	13.63	0.00	2.125	21.92	0.93	20.8	79.2	0.0	-6.09	2.13	0.70	0.77	2.54	3816	276	12	0	0	0	1776	logfile
✔	6NYM	0546	2023-11-17	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.20	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.1	0.007	0.83	0.0	0.05	12.88	0.00	2.133	18.95	0.35	20.3	79.7	0.0	-4.50	1.20	0.88	0.80	2.49	68664	9000	12	0	0	0	0	logfile
✔	7UAK	26427	2023-11-13	2022-03-13	3.38	3.45	2.13	3.6	0.003	0.70	0.0	0.05	13.75	0.00	2.407	13.48	0.00	14.4	85.6	0.0	-2.82	0.31	0.67	2.41	3.6	0.004	0.76	0.0	0.05	16.77	0.00	2.270	8.54	0.00	20.3	79.7	0.0	-3.45	0.63	0.37	0.76	1.90	2586	372	6	0	0	0	0	logfile
✔	7V47	31702	2023-11-13	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	2.9	0.005	0.72	0.0	0.06	17.25	0.00	2.432	8.29	3.25	20.3	79.7	0.0	-4.30	0.33	0.44	0.80	6.27	2484	366	6	0	0	0	0	logfile

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