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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GJ1 | 0009 | 2023-04-22 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.57 | 0.01 | 2.086 | 22.39 | 0.00 | 16.4 | 83.4 | 0.1 | -3.83 | 1.16 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZAL | 6905 | 2023-04-22 | 2018-02-07 | 4.7 | 4.44 | — | 3.8 | 0.008 | 1.44 | 1.0 | 0.07 | 12.67 | 0.01 | 2.215 | 19.06 | 0.97 | 16.1 | 83.2 | 0.7 | -5.19 | 0.87 | 0.74 | — | 3.8 | 0.005 | 0.95 | 0.0 | 0.05 | 13.33 | 0.01 | 2.089 | 38.66 | 0.00 | 16.3 | 83.5 | 0.2 | -3.24 | 1.62 | 0.84 | 0.60 | — | 12346 | 1389 | 3 | 58 | 0 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2023-04-20 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.002 | 0.64 | 0.0 | 0.05 | 12.90 | 0.00 | 2.248 | 6.00 | 0.00 | 16.4 | 83.6 | 0.0 | -5.26 | 1.68 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 6NY1 | 8994 | 2023-04-21 | 2019-02-10 | 4.2 | 4.56 | — | 4.3 | 0.007 | 1.11 | 0.0 | 0.06 | 21.20 | 0.01 | 2.099 | 9.52 | 0.33 | 18.6 | 81.0 | 0.4 | -4.84 | 0.80 | 0.80 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 20.36 | 0.00 | 2.150 | 15.20 | 0.00 | 16.3 | 83.6 | 0.1 | -2.23 | 0.59 | 0.79 | 0.78 | — | 9911 | 783 | 4 | 154 | 121 | 0 | 0 | logfile |
✔ | 6SH5 | 10194 | 2023-04-22 | 2019-08-05 | 4.6 | 4.70 | — | 4.5 | 0.005 | 0.97 | 0.0 | 0.05 | 5.65 | 0.01 | 2.474 | 2.35 | 0.00 | 9.0 | 91.0 | 0.0 | -3.63 | 0.80 | 0.76 | — | 4.5 | 0.004 | 0.82 | 0.0 | 0.04 | 5.28 | 0.00 | 2.265 | 5.49 | 0.00 | 16.4 | 83.6 | 0.0 | -2.90 | 1.64 | 0.82 | 0.82 | — | 11529 | 2338 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WUN | 21917 | 2023-04-21 | 2020-05-04 | 3.9 | 4.00 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 13.70 | 0.00 | 2.166 | 14.26 | 1.14 | 18.4 | 81.6 | 0.0 | -6.35 | 0.68 | 0.80 | 1.75 | 3.9 | 0.005 | 0.78 | 0.0 | 0.04 | 14.77 | 0.00 | 2.028 | 12.03 | 0.38 | 16.1 | 83.8 | 0.1 | -3.62 | 0.57 | 0.68 | 0.80 | 1.47 | 10082 | 1326 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B40 | 7046 | 2023-04-23 | 2017-09-25 | 4.3 | 4.48 | — | 4.4 | 0.007 | 1.13 | 0.0 | 0.06 | 16.61 | 0.01 | 2.269 | 8.08 | 0.00 | 18.8 | 81.0 | 0.2 | -5.22 | 0.76 | 0.70 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.04 | 17.69 | 0.01 | 2.079 | 18.20 | 0.00 | 16.2 | 83.8 | 0.0 | -3.25 | 2.12 | 0.80 | 0.77 | — | 16202 | 1800 | 12 | 100 | 42 | 0 | 0 | logfile |
✔ | 6oRQ | 20178 | 2023-04-25 | 2019-04-30 | 4.4 | 4.71 | 4.38 | 4.5 | 0.008 | 1.31 | 0.0 | 0.08 | 12.61 | 0.01 | 2.039 | 6.79 | 1.04 | 16.3 | 83.4 | 0.3 | -4.97 | 0.65 | 0.83 | — | 4.5 | 0.003 | 0.89 | 0.0 | 0.05 | 12.93 | 0.00 | 2.145 | 16.63 | 0.24 | 16.0 | 83.9 | 0.1 | -3.57 | 1.60 | 0.65 | 0.83 | — | 20176 | 2430 | 40 | 0 | 83 | 0 | 0 | logfile |
✔ | 6PiG | 20350 | 2023-04-28 | 2019-06-26 | 3.5 | 3.54 | 3.59 | 3.5 | 0.014 | 1.76 | 1.0 | 0.09 | 16.07 | 0.00 | 2.173 | 1.98 | 1.58 | 15.2 | 81.4 | 3.5 | -4.85 | 0.60 | 0.76 | 2.54 | 3.5 | 0.003 | 0.79 | 0.0 | 0.04 | 17.21 | 0.01 | 2.110 | 11.30 | 0.26 | 15.5 | 84.0 | 0.5 | -2.90 | 0.59 | 0.65 | 0.79 | 2.17 | 28867 | 3439 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 6oKS | 20103 | 2023-04-22 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.05 | 14.37 | 0.01 | 2.223 | 15.59 | 0.00 | 16.0 | 84.0 | 0.0 | -4.93 | 2.23 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-04-21 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2023-04-29 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.44 | 1.0 | 0.06 | 18.67 | 0.02 | 0.193 | 10.34 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.013 | 0.93 | 0.0 | 0.04 | 18.90 | 0.01 | 1.977 | 36.16 | 0.35 | 15.8 | 84.1 | 0.1 | -3.77 | 2.58 | 0.92 | 0.79 | 0.35 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 6NY3 | 8980 | 2023-04-21 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 19.98 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 19.90 | 0.00 | 2.137 | 9.68 | 0.66 | 15.7 | 84.1 | 0.1 | -1.78 | 1.01 | 0.66 | 0.77 | 0.74 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2023-04-23 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 14.03 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.89 | 0.0 | 0.04 | 17.39 | 0.01 | 2.066 | 20.24 | 0.88 | 15.6 | 84.1 | 0.3 | -4.03 | 1.62 | 0.62 | 0.67 | 0.65 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2023-04-21 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 10.85 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 7.85 | 0.00 | 2.192 | 4.64 | 0.00 | 15.8 | 84.2 | 0.0 | -1.38 | 1.34 | 0.78 | 0.80 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 6D6V | 7821 | 2023-04-24 | 2018-04-22 | 4.8 | 5.14 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 19.43 | 0.01 | 1.189 | 25.63 | 0.97 | 15.8 | 83.5 | 0.7 | -4.28 | 0.84 | 0.74 | — | 4.6 | 0.004 | 0.82 | 0.0 | 0.04 | 19.09 | 0.00 | 2.055 | 31.43 | 0.00 | 15.8 | 84.2 | 0.0 | -2.40 | 1.57 | 0.86 | 0.79 | — | 17317 | 1535 | 9 | 178 | 158 | 0 | 0 | logfile |
✔ | 7JMN | 22397 | 2023-04-22 | 2020-08-02 | 3.58 | 3.99 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.64 | 0.01 | 2.115 | 11.08 | 0.07 | 19.3 | 80.2 | 0.6 | -5.81 | 0.79 | 0.78 | 1.61 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 16.33 | 0.00 | 2.188 | 10.25 | 0.21 | 15.5 | 84.2 | 0.3 | -3.53 | 1.24 | 0.78 | 0.77 | 1.31 | 13633 | 1756 | 5 | 0 | 52 | 0 | 0 | logfile |
✔ | 6PiJ | 20351 | 2023-04-29 | 2019-06-26 | 2.9 | 3.06 | 3.01 | 3.0 | 0.013 | 1.74 | 0.0 | 0.08 | 16.44 | 0.00 | 2.277 | 3.60 | 0.66 | 14.2 | 82.4 | 3.4 | -4.59 | 0.68 | 0.80 | 3.24 | 3.0 | 0.004 | 0.87 | 0.0 | 0.05 | 18.26 | 0.01 | 2.049 | 12.56 | 2.67 | 15.3 | 84.2 | 0.5 | -2.45 | 1.21 | 0.73 | 0.86 | 2.96 | 29671 | 3452 | 13 | 96 | 0 | 0 | 0 | logfile |
✔ | 6QX7 | 4662 | 2023-04-27 | 2019-03-07 | 3.8 | 3.98 | — | 3.9 | 0.006 | 1.16 | 0.0 | 0.06 | 11.55 | 0.01 | 0.726 | 11.76 | 1.75 | 14.3 | 84.1 | 1.6 | -4.94 | 0.63 | 0.59 | 1.19 | 3.9 | 0.004 | 0.94 | 0.0 | 0.05 | 17.09 | 0.01 | 2.061 | 21.16 | 0.77 | 15.3 | 84.3 | 0.4 | -2.07 | 1.16 | 0.66 | 0.59 | 0.63 | 25164 | 3072 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A9B | 15275 | 2023-04-20 | 2022-06-28 | 4.0 | 4.28 | 3.95 | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 14.89 | 0.00 | 2.113 | 20.52 | 0.00 | 14.8 | 84.2 | 1.0 | -3.17 | 0.67 | 0.58 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.05 | 17.05 | 0.00 | 2.139 | 20.83 | 0.43 | 14.8 | 84.4 | 0.7 | -2.95 | 0.53 | 0.71 | 0.64 | — | 6386 | 809 | 1 | 0 | 0 | 0 | 0 | logfile |