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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PMC | 13528 | 2022-12-12 | 2021-09-02 | 3.7 | 4.09 | 3.62 | 3.5 | 0.008 | 1.07 | 2.0 | 0.06 | 16.08 | 0.01 | 1.317 | 7.15 | 0.09 | 0.2 | 99.8 | 0.0 | -1.41 | 0.89 | 0.80 | 2.38 | 3.5 | 0.003 | 0.69 | 1.0 | 0.04 | 16.20 | 0.00 | 2.033 | 10.62 | 0.09 | 1.6 | 98.4 | 0.0 | 1.52 | 1.34 | 0.90 | 0.82 | 1.85 | 10139 | 1258 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PMJ | 13536 | 2022-12-12 | 2021-09-02 | 3.4 | 4.31 | 3.37 | 3.3 | 0.010 | 1.11 | 2.0 | 0.06 | 15.32 | 0.01 | 1.310 | 6.69 | 0.09 | 0.2 | 99.8 | 0.0 | -1.97 | 0.90 | 0.82 | 3.01 | 3.3 | 0.003 | 0.62 | 1.0 | 0.04 | 15.56 | 0.00 | 1.948 | 8.14 | 0.09 | 1.6 | 98.4 | 0.0 | 1.83 | 0.72 | 0.93 | 0.86 | 2.59 | 10085 | 1251 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMB | 13527 | 2022-12-12 | 2021-09-02 | 3.6 | 4.10 | 3.61 | 3.6 | 0.006 | 0.93 | 2.0 | 0.06 | 15.72 | 0.01 | 1.317 | 6.62 | 0.09 | 0.2 | 99.8 | 0.0 | -1.25 | 0.90 | 0.83 | 2.52 | 3.6 | 0.005 | 0.73 | 1.0 | 0.04 | 16.33 | 0.00 | 1.889 | 10.10 | 0.46 | 2.0 | 98.0 | 0.0 | 1.22 | 1.32 | 0.91 | 0.85 | 2.43 | 10113 | 1255 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7LMS | 23441 | 2022-12-11 | 2021-02-05 | 3.5 | 4.13 | 3.61 | 4.0 | 0.019 | 1.52 | 0.0 | 0.09 | 10.07 | 0.01 | 2.432 | 0.51 | 0.00 | 0.2 | 99.8 | 0.0 | 0.57 | 0.81 | 0.83 | 3.45 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 14.64 | 0.00 | 2.166 | 6.95 | 0.19 | 1.6 | 98.4 | 0.0 | 0.54 | 1.45 | 0.75 | 0.82 | 2.32 | 4947 | 613 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XLA | 22237 | 2022-12-11 | 2020-06-28 | 3.1 | 3.41 | — | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 19.84 | 0.00 | 2.276 | 3.56 | 0.00 | 0.2 | 99.8 | 0.0 | -2.59 | 0.78 | 0.84 | 3.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 20.69 | 0.00 | 2.128 | 4.91 | 0.41 | 3.0 | 97.0 | 0.0 | -0.29 | 1.32 | 0.79 | 0.86 | 3.00 | 5403 | 536 | 6 | 46 | 2 | 0 | 0 | logfile |
✘ | 7PM1 | 13509 | 2022-12-18 | 2021-09-01 | 3.5 | 3.74 | 3.64 | 3.5 | 0.004 | 0.80 | 0.0 | 0.05 | 14.89 | 0.01 | 1.201 | 5.09 | 0.00 | 0.2 | 99.8 | 0.0 | -1.54 | 0.89 | 0.84 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10169 | 1261 | 3 | 0 | 4 | 0 | 0 | logfile |
✘ | 7PM2 | 13510 | 2022-12-18 | 2021-09-01 | 3.6 | 3.83 | 3.61 | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 15.46 | 0.01 | 1.201 | 4.80 | 0.00 | 0.2 | 99.8 | 0.0 | -1.45 | 0.89 | 0.84 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10156 | 1259 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PMD | 13529 | 2022-12-12 | 2021-09-02 | 2.9 | 4.01 | 2.83 | 3.4 | 0.012 | 1.06 | 2.0 | 0.06 | 14.84 | 0.01 | 1.314 | 3.76 | 0.09 | 0.2 | 99.8 | 0.0 | -1.33 | 0.94 | 0.88 | 3.40 | 3.4 | 0.003 | 0.64 | 1.0 | 0.04 | 15.46 | 0.00 | 1.996 | 6.47 | 0.46 | 1.8 | 98.2 | 0.0 | 1.71 | 1.26 | 0.93 | 0.88 | 2.98 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PM7 | 13523 | 2022-12-12 | 2021-09-02 | 3.5 | 3.92 | 3.46 | 3.4 | 0.004 | 0.85 | 2.0 | 0.05 | 15.53 | 0.01 | 1.316 | 5.41 | 0.09 | 0.2 | 99.8 | 0.0 | -1.31 | 0.90 | 0.84 | 3.49 | 3.5 | 0.003 | 0.68 | 1.0 | 0.04 | 15.67 | 0.00 | 1.948 | 8.38 | 0.19 | 1.8 | 98.2 | 0.0 | 1.80 | 2.26 | 0.90 | 0.85 | 2.78 | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PMF | 13531 | 2022-12-12 | 2021-09-02 | 3.4 | 4.29 | 3.47 | 3.3 | 0.010 | 1.00 | 2.0 | 0.06 | 14.81 | 0.01 | 1.313 | 4.03 | 0.09 | 0.2 | 99.8 | 0.0 | -1.44 | 0.91 | 0.83 | 3.07 | 3.3 | 0.003 | 0.61 | 1.0 | 0.04 | 15.08 | 0.00 | 1.970 | 7.11 | 0.09 | 1.1 | 98.9 | 0.0 | 1.88 | 1.69 | 0.94 | 0.88 | 2.42 | 10125 | 1256 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMi | 13535 | 2022-12-12 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.17 | 3.0 | 0.07 | 15.30 | 0.01 | 1.306 | 5.14 | 0.09 | 0.2 | 99.8 | 0.0 | -1.50 | 0.92 | 0.84 | 2.97 | 3.3 | 0.003 | 0.67 | 1.0 | 0.04 | 15.61 | 0.00 | 2.043 | 7.76 | 0.09 | 1.5 | 98.5 | 0.0 | 1.37 | 0.66 | 0.94 | 0.88 | 2.59 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7PM0 | 13508 | 2022-12-18 | 2021-09-01 | 3.6 | 3.89 | 3.65 | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 14.98 | 0.01 | 1.200 | 5.05 | 0.00 | 0.2 | 99.8 | 0.0 | -1.27 | 0.90 | 0.85 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10169 | 1261 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PLW | 13504 | 2022-12-12 | 2021-09-01 | 3.5 | 4.05 | 3.55 | 3.5 | 0.005 | 0.84 | 1.0 | 0.05 | 15.08 | 0.01 | 1.323 | 4.86 | 0.00 | 0.2 | 99.8 | 0.0 | -1.69 | 0.91 | 0.83 | 3.00 | 3.5 | 0.003 | 0.63 | 1.0 | 0.04 | 15.80 | 0.00 | 2.009 | 7.84 | 0.09 | 1.5 | 98.5 | 0.0 | 1.14 | 1.30 | 0.91 | 0.85 | 2.30 | 10139 | 1263 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7PLT | 13501 | 2022-12-12 | 2021-09-01 | 3.3 | 3.94 | 3.24 | 3.4 | 0.014 | 1.15 | 2.0 | 0.07 | 14.56 | 0.01 | 1.312 | 4.21 | 0.00 | 0.2 | 99.8 | 0.0 | -1.61 | 0.92 | 0.87 | 3.10 | 3.5 | 0.003 | 0.65 | 1.0 | 0.04 | 15.45 | 0.00 | 2.039 | 7.63 | 0.00 | 1.2 | 98.8 | 0.0 | 1.52 | 0.64 | 0.91 | 0.88 | 2.11 | 10148 | 1264 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6U1X | 20614 | 2022-12-18 | 2019-08-17 | 3.0 | 3.37 | 3.11 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 10.38 | 0.00 | 1.986 | 3.85 | 0.11 | 0.3 | 99.7 | 0.0 | -3.08 | 0.67 | 0.81 | 4.07 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 14.48 | 0.00 | 1.826 | 6.65 | 0.96 | 4.6 | 95.4 | 0.0 | -0.16 | 2.28 | 0.68 | 0.83 | 3.57 | 33529 | 2087 | 3 | 0 | 2 | 0 | 16768 | logfile |
✔ | 6C9i | 7436 | 2022-12-15 | 2018-01-26 | 3.09 | 3.21 | — | 3.2 | 0.029 | 1.48 | 0.0 | 0.12 | 9.22 | 0.01 | 2.417 | 1.04 | 0.00 | 0.3 | 99.6 | 0.1 | 2.36 | 0.79 | 0.85 | 4.97 | 3.2 | 0.004 | 0.47 | 0.0 | 0.04 | 15.04 | 0.00 | 2.229 | 5.61 | 0.12 | 0.0 | 100.0 | 0.0 | 3.66 | 2.42 | 0.72 | 0.90 | 3.62 | 23700 | 3087 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PM8 | 13524 | 2022-12-12 | 2021-09-02 | 3.5 | 3.91 | 3.50 | 3.4 | 0.004 | 0.88 | 2.0 | 0.05 | 15.57 | 0.01 | 1.316 | 6.55 | 0.09 | 0.3 | 99.7 | 0.0 | -1.60 | 0.90 | 0.83 | 2.90 | 3.4 | 0.005 | 0.72 | 1.0 | 0.04 | 15.83 | 0.00 | 1.917 | 10.86 | 0.28 | 2.4 | 97.6 | 0.0 | 0.70 | 1.69 | 0.91 | 0.85 | 2.74 | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PM5 | 13521 | 2022-12-12 | 2021-09-02 | 3.1 | 3.88 | 3.26 | 3.5 | 0.005 | 0.83 | 2.0 | 0.05 | 14.75 | 0.01 | 1.317 | 4.65 | 0.09 | 0.3 | 99.7 | 0.0 | -1.20 | 0.89 | 0.86 | 3.36 | 3.5 | 0.002 | 0.62 | 1.0 | 0.04 | 14.94 | 0.00 | 2.059 | 7.18 | 0.00 | 1.3 | 98.7 | 0.0 | 1.63 | 0.69 | 0.87 | 0.85 | 2.83 | 10171 | 1263 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7UiY | 26557 | 2022-12-15 | 2022-03-29 | 3.22 | 3.19 | — | 3.2 | 0.006 | 0.86 | 0.0 | 0.04 | 14.26 | 0.00 | 1.981 | 3.51 | 0.00 | 0.3 | 99.7 | 0.0 | -0.25 | 0.60 | 0.81 | 3.14 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 16.67 | 0.00 | 1.831 | 9.20 | 0.15 | 2.7 | 97.3 | 0.0 | 0.46 | 0.66 | 0.61 | 0.85 | 3.06 | 76262 | 4819 | 20 | 0 | 17 | 0 | 38283 | logfile |
✔ | 6T93 | 10408 | 2022-12-12 | 2019-10-25 | 3.49 | 4.10 | — | 3.7 | 0.014 | 1.15 | 0.0 | 0.06 | 27.23 | 0.01 | 2.435 | 0.92 | 0.00 | 0.3 | 99.7 | 0.0 | 0.78 | 0.87 | 0.85 | 2.94 | 3.7 | 0.005 | 0.68 | 0.0 | 0.04 | 28.15 | 0.00 | 2.136 | 12.79 | 0.79 | 2.2 | 97.8 | 0.0 | 2.49 | 1.86 | 0.87 | 0.87 | 1.75 | 12199 | 758 | 10 | 302 | 0 | 0 | 0 | logfile |