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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6T24 | 10366 | 2023-04-23 | 2019-10-07 | 3.7 | 3.44 | 3.63 | 3.6 | 0.049 | 3.18 | 0.0 | 0.23 | 14.36 | 0.01 | 2.104 | 2.74 | 0.00 | 0.5 | 99.5 | 0.0 | 0.74 | 0.68 | 0.80 | 2.64 | 3.5 | 0.003 | 1.54 | 0.0 | 0.04 | 17.29 | 0.00 | 1.619 | 16.29 | 0.32 | 1.4 | 98.6 | 0.0 | 0.89 | 1.42 | 0.69 | 0.82 | 2.30 | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 6L3V | 0827 | 2023-04-25 | 2019-10-15 | 2.63 | 2.90 | 2.72 | 2.9 | 0.009 | 0.92 | 0.0 | 0.04 | 17.16 | 0.01 | 2.218 | 1.00 | 5.45 | 0.5 | 99.5 | 0.0 | -5.00 | 0.57 | 0.85 | 3.54 | 2.9 | 0.003 | 0.60 | 0.0 | 0.03 | 16.70 | 0.00 | 2.186 | 2.31 | 1.41 | 0.8 | 99.2 | 0.0 | 2.15 | 3.58 | 0.59 | 0.87 | 2.86 | 19416 | 1206 | 12 | 0 | 6 | 0 | 9528 | logfile |
✔ | 8CY8 | 27070 | 2023-04-28 | 2022-05-23 | 2.94 | 3.19 | 3.01 | 3.2 | 0.011 | 0.79 | 0.0 | 0.06 | 12.77 | 0.01 | 2.171 | 3.51 | 0.00 | 0.6 | 99.4 | 0.0 | 1.60 | 0.74 | 0.87 | 4.77 | 3.2 | 0.002 | 0.51 | 0.0 | 0.04 | 15.62 | 0.00 | 2.156 | 4.38 | 1.06 | 1.2 | 98.8 | 0.0 | 2.15 | 0.92 | 0.72 | 0.87 | 3.60 | 28800 | 3744 | 23 | 0 | 12 | 0 | 0 | logfile |
✔ | 7XNH | 33315 | 2023-04-25 | 2022-04-28 | 3.1 | 2.98 | 2.73 | 2.9 | 0.006 | 1.12 | 0.0 | 0.05 | 13.57 | 0.01 | 2.144 | 6.68 | 0.61 | 0.6 | 99.4 | 0.0 | -0.23 | 0.72 | 0.87 | 4.77 | 2.9 | 0.002 | 0.45 | 0.0 | 0.04 | 13.55 | 0.00 | 2.333 | 4.76 | 0.15 | 0.8 | 99.2 | 0.0 | 2.76 | 0.97 | 0.73 | 0.84 | 3.00 | 19224 | 2172 | 24 | 0 | 132 | 0 | 0 | logfile |
✔ | 7EK3 | 31167 | 2023-04-22 | 2021-04-03 | 2.7 | 2.73 | 2.64 | 2.7 | 0.018 | 1.85 | 5.0 | 0.08 | 14.91 | 0.01 | 2.231 | 2.51 | 1.66 | 0.6 | 99.4 | 0.0 | -0.56 | 0.65 | 0.85 | 3.26 | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 17.00 | 0.00 | 2.150 | 5.82 | 1.79 | 1.7 | 98.3 | 0.0 | 2.88 | 0.51 | 0.73 | 0.88 | 1.82 | 13505 | 1705 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QND | 14075 | 2023-04-24 | 2021-12-20 | 3.4 | 3.55 | — | 3.4 | 0.003 | 0.46 | 0.0 | 0.04 | 7.75 | 0.00 | 2.210 | 4.79 | 0.45 | 0.6 | 99.4 | 0.0 | 2.54 | 0.75 | 0.83 | 3.55 | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 13.71 | 0.00 | 2.126 | 11.53 | 0.56 | 1.6 | 98.4 | 0.0 | 1.18 | 3.38 | 0.76 | 0.87 | 3.50 | 16810 | 1995 | 19 | 0 | 33 | 0 | 0 | logfile |
✔ | 7NLL | 12465 | 2023-04-20 | 2021-02-22 | 2.89 | 3.42 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.26 | 10.85 | 0.00 | 2.255 | 7.02 | 0.00 | 0.6 | 99.4 | 0.0 | 1.34 | 0.80 | 0.82 | 3.17 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.88 | 0.00 | 2.220 | 8.36 | 3.07 | 2.3 | 97.5 | 0.2 | -0.33 | 1.58 | 0.82 | 0.87 | 3.19 | 5056 | 656 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6XLM | 22248 | 2023-04-28 | 2020-06-28 | 3.2 | 3.76 | — | 3.5 | 0.008 | 0.80 | 0.0 | 0.05 | 14.94 | 0.00 | 1.972 | 9.42 | 0.07 | 0.7 | 99.3 | 0.0 | -2.52 | 0.82 | 0.84 | 2.16 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 15.93 | 0.00 | 1.862 | 10.66 | 0.07 | 3.5 | 96.5 | 0.0 | 0.01 | 1.42 | 0.82 | 0.83 | 1.77 | 28244 | 3485 | 11 | 40 | 5 | 0 | 0 | logfile |
✘ | 7Y5G | 33619 | 2023-04-20 | 2022-06-17 | 3.85 | 4.19 | 3.81 | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 12.74 | 0.00 | 2.084 | 2.19 | 0.00 | 0.7 | 99.3 | 0.0 | -0.05 | 0.63 | 0.72 | 1.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4736 | 604 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8B1R | 15803 | 2023-04-26 | 2022-09-12 | 3.2 | 3.47 | 3.13 | 3.3 | 0.004 | 0.63 | 0.0 | 0.05 | 9.18 | 0.00 | 2.210 | 7.58 | 0.34 | 0.7 | 99.3 | 0.0 | 0.06 | 0.84 | 0.87 | 2.66 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 13.23 | 0.00 | 2.221 | 5.19 | 0.17 | 1.6 | 98.4 | 0.0 | 2.27 | 0.64 | 0.86 | 0.90 | 2.75 | 21953 | 2746 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8iD6 | 35358 | 2023-04-21 | 2023-02-12 | 2.8 | 2.99 | 2.85 | 3.0 | 0.004 | 0.67 | 0.0 | 0.05 | 11.40 | 0.01 | 2.180 | 7.91 | 0.00 | 0.7 | 99.3 | 0.0 | 0.86 | 0.68 | 0.81 | 3.66 | 3.0 | 0.002 | 0.58 | 0.0 | 0.04 | 14.24 | 0.00 | 2.134 | 4.79 | 1.52 | 2.1 | 97.9 | 0.0 | 1.31 | 0.52 | 0.67 | 0.83 | 3.38 | 8727 | 1139 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7SQV | 25396 | 2023-04-20 | 2021-11-06 | 2.3 | 2.95 | 2.29 | 2.8 | 0.001 | 0.38 | 0.0 | 0.04 | 16.08 | 0.00 | 2.314 | 1.47 | 0.63 | 0.7 | 99.3 | 0.0 | 1.86 | 0.76 | 0.88 | 3.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4471 | 573 | 5 | 0 | 0 | 7 | 0 | logfile |
✔ | 7MVY | 24058 | 2023-04-27 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.28 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.21 | 0.00 | 1.966 | 12.50 | 1.86 | 4.0 | 96.0 | 0.0 | 1.26 | 1.65 | 0.76 | 0.75 | 2.15 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 7LRC | 23494 | 2023-04-20 | 2021-02-16 | 2.97 | 4.17 | 2.92 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 7.94 | 0.01 | 1.795 | 5.33 | 0.30 | 0.8 | 99.2 | 0.0 | 3.49 | 0.72 | 0.74 | 3.03 | 3.5 | 0.002 | 0.60 | 0.0 | 0.04 | 11.45 | 0.00 | 2.007 | 9.75 | 0.90 | 0.8 | 99.2 | 0.0 | 3.50 | 0.56 | 0.76 | 0.86 | 3.04 | 6202 | 762 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6ZBE | 11152 | 2023-04-25 | 2020-06-08 | 3.3 | 4.04 | 3.36 | 3.7 | 0.010 | 1.16 | 0.0 | 0.08 | 13.39 | 0.01 | 2.470 | 1.13 | 0.00 | 0.8 | 99.2 | 0.0 | 0.61 | 0.84 | 0.76 | 1.69 | 3.7 | 0.004 | 0.53 | 0.0 | 0.03 | 15.47 | 0.00 | 2.081 | 5.89 | 0.09 | 1.9 | 98.1 | 0.0 | 3.65 | 1.52 | 0.85 | 0.79 | 1.32 | 19534 | 1160 | 4 | 0 | 0 | 0 | 9902 | logfile |
✔ | 6ZBF | 11153 | 2023-04-25 | 2020-06-08 | 3.2 | 3.99 | 3.33 | 3.6 | 0.010 | 1.17 | 0.0 | 0.08 | 13.49 | 0.01 | 2.469 | 1.34 | 0.00 | 0.8 | 99.2 | 0.0 | 0.79 | 0.84 | 0.76 | 1.37 | 3.6 | 0.003 | 0.49 | 0.0 | 0.03 | 15.23 | 0.00 | 1.930 | 5.09 | 0.00 | 1.1 | 98.9 | 0.0 | 4.10 | 2.84 | 0.85 | 0.78 | 1.36 | 19459 | 1156 | 4 | 0 | 0 | 0 | 9861 | logfile |
✔ | 6PEK | 20327 | 2023-04-22 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.87 | 0.00 | 1.129 | 14.37 | 0.00 | 3.0 | 97.0 | 0.0 | -0.34 | 0.99 | 0.71 | 0.77 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 6T23 | 10365 | 2023-04-23 | 2019-10-07 | 3.1 | 3.12 | 3.08 | 3.1 | 0.050 | 3.17 | 0.0 | 0.23 | 14.19 | 0.01 | 2.141 | 2.13 | 0.00 | 0.8 | 99.2 | 0.0 | 0.95 | 0.75 | 0.84 | 3.46 | 3.1 | 0.003 | 1.52 | 0.0 | 0.04 | 16.72 | 0.00 | 1.969 | 12.50 | 0.26 | 1.5 | 98.5 | 0.0 | 1.31 | 0.73 | 0.74 | 0.87 | 3.00 | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 7oNJ | 12996 | 2023-04-24 | 2021-05-25 | 2.3 | 2.52 | 2.24 | 2.5 | 0.009 | 0.86 | 0.0 | 0.05 | 18.33 | 0.00 | 2.155 | 8.48 | 0.47 | 0.8 | 99.2 | 0.0 | -0.25 | 0.76 | 0.88 | 5.16 | 2.5 | 0.002 | 0.46 | 0.0 | 0.04 | 18.08 | 0.00 | 2.173 | 8.46 | 0.61 | 0.8 | 99.2 | 0.0 | 2.22 | 1.14 | 0.75 | 0.89 | 4.38 | 16947 | 1834 | 21 | 0 | 63 | 266 | 0 | logfile |
✔ | 6WCB | 21605 | 2023-04-22 | 2020-03-30 | 3.17 | 3.17 | — | 3.2 | 0.005 | 0.41 | 0.0 | 0.03 | 13.87 | 0.00 | 2.128 | 2.50 | 1.29 | 0.8 | 99.2 | 0.0 | 0.58 | 0.55 | 0.77 | 2.89 | 3.2 | 0.003 | 0.50 | 0.0 | 0.04 | 15.55 | 0.00 | 2.072 | 3.71 | 0.16 | 1.7 | 98.3 | 0.0 | 3.40 | 1.29 | 0.54 | 0.79 | 2.46 | 11647 | 734 | 6 | 0 | 7 | 40 | 5904 | logfile |