Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6T24	10366	2023-04-23	2019-10-07	3.7	3.44	3.63	3.6	0.049	3.18	0.0	0.23	14.36	0.01	2.104	2.74	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	3.5	0.003	1.54	0.0	0.04	17.29	0.00	1.619	16.29	0.32	1.4	98.6	0.0	0.89	1.42	0.69	0.82	2.30	14910	1855	10	0	20	0	0	logfile
✔	6L3V	0827	2023-04-25	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.60	0.0	0.03	16.70	0.00	2.186	2.31	1.41	0.8	99.2	0.0	2.15	3.58	0.59	0.87	2.86	19416	1206	12	0	6	0	9528	logfile
✔	8CY8	27070	2023-04-28	2022-05-23	2.94	3.19	3.01	3.2	0.011	0.79	0.0	0.06	12.77	0.01	2.171	3.51	0.00	0.6	99.4	0.0	1.60	0.74	0.87	4.77	3.2	0.002	0.51	0.0	0.04	15.62	0.00	2.156	4.38	1.06	1.2	98.8	0.0	2.15	0.92	0.72	0.87	3.60	28800	3744	23	0	12	0	0	logfile
✔	7XNH	33315	2023-04-25	2022-04-28	3.1	2.98	2.73	2.9	0.006	1.12	0.0	0.05	13.57	0.01	2.144	6.68	0.61	0.6	99.4	0.0	-0.23	0.72	0.87	4.77	2.9	0.002	0.45	0.0	0.04	13.55	0.00	2.333	4.76	0.15	0.8	99.2	0.0	2.76	0.97	0.73	0.84	3.00	19224	2172	24	0	132	0	0	logfile
✔	7EK3	31167	2023-04-22	2021-04-03	2.7	2.73	2.64	2.7	0.018	1.85	5.0	0.08	14.91	0.01	2.231	2.51	1.66	0.6	99.4	0.0	-0.56	0.65	0.85	3.26	2.7	0.003	0.57	0.0	0.04	17.00	0.00	2.150	5.82	1.79	1.7	98.3	0.0	2.88	0.51	0.73	0.88	1.82	13505	1705	5	0	0	0	0	logfile
✔	7QND	14075	2023-04-24	2021-12-20	3.4	3.55	—	3.4	0.003	0.46	0.0	0.04	7.75	0.00	2.210	4.79	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.71	0.0	0.04	13.71	0.00	2.126	11.53	0.56	1.6	98.4	0.0	1.18	3.38	0.76	0.87	3.50	16810	1995	19	0	33	0	0	logfile
✔	7NLL	12465	2023-04-20	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	10.85	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.65	0.0	0.04	14.88	0.00	2.220	8.36	3.07	2.3	97.5	0.2	-0.33	1.58	0.82	0.87	3.19	5056	656	6	0	2	0	0	logfile
✔	6XLM	22248	2023-04-28	2020-06-28	3.2	3.76	—	3.5	0.008	0.80	0.0	0.05	14.94	0.00	1.972	9.42	0.07	0.7	99.3	0.0	-2.52	0.82	0.84	2.16	3.5	0.003	0.57	0.0	0.04	15.93	0.00	1.862	10.66	0.07	3.5	96.5	0.0	0.01	1.42	0.82	0.83	1.77	28244	3485	11	40	5	0	0	logfile
✘	7Y5G	33619	2023-04-20	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4736	604	4	0	6	0	0	logfile
✔	8B1R	15803	2023-04-26	2022-09-12	3.2	3.47	3.13	3.3	0.004	0.63	0.0	0.05	9.18	0.00	2.210	7.58	0.34	0.7	99.3	0.0	0.06	0.84	0.87	2.66	3.3	0.004	0.55	0.0	0.04	13.23	0.00	2.221	5.19	0.17	1.6	98.4	0.0	2.27	0.64	0.86	0.90	2.75	21953	2746	6	0	1	0	0	logfile
✔	8iD6	35358	2023-04-21	2023-02-12	2.8	2.99	2.85	3.0	0.004	0.67	0.0	0.05	11.40	0.01	2.180	7.91	0.00	0.7	99.3	0.0	0.86	0.68	0.81	3.66	3.0	0.002	0.58	0.0	0.04	14.24	0.00	2.134	4.79	1.52	2.1	97.9	0.0	1.31	0.52	0.67	0.83	3.38	8727	1139	6	0	1	0	0	logfile
✘	7SQV	25396	2023-04-20	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4471	573	5	0	0	7	0	logfile
✔	7MVY	24058	2023-04-27	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	7LRC	23494	2023-04-20	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	7.94	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.45	0.00	2.007	9.75	0.90	0.8	99.2	0.0	3.50	0.56	0.76	0.86	3.04	6202	762	6	0	6	0	0	logfile
✔	6ZBE	11152	2023-04-25	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.13	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.004	0.53	0.0	0.03	15.47	0.00	2.081	5.89	0.09	1.9	98.1	0.0	3.65	1.52	0.85	0.79	1.32	19534	1160	4	0	0	0	9902	logfile
✔	6ZBF	11153	2023-04-25	2020-06-08	3.2	3.99	3.33	3.6	0.010	1.17	0.0	0.08	13.49	0.01	2.469	1.34	0.00	0.8	99.2	0.0	0.79	0.84	0.76	1.37	3.6	0.003	0.49	0.0	0.03	15.23	0.00	1.930	5.09	0.00	1.1	98.9	0.0	4.10	2.84	0.85	0.78	1.36	19459	1156	4	0	0	0	9861	logfile
✔	6PEK	20327	2023-04-22	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	6T23	10365	2023-04-23	2019-10-07	3.1	3.12	3.08	3.1	0.050	3.17	0.0	0.23	14.19	0.01	2.141	2.13	0.00	0.8	99.2	0.0	0.95	0.75	0.84	3.46	3.1	0.003	1.52	0.0	0.04	16.72	0.00	1.969	12.50	0.26	1.5	98.5	0.0	1.31	0.73	0.74	0.87	3.00	14910	1855	10	0	20	0	0	logfile
✔	7oNJ	12996	2023-04-24	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	18.33	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.002	0.46	0.0	0.04	18.08	0.00	2.173	8.46	0.61	0.8	99.2	0.0	2.22	1.14	0.75	0.89	4.38	16947	1834	21	0	63	266	0	logfile
✔	6WCB	21605	2023-04-22	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.50	0.0	0.04	15.55	0.00	2.072	3.71	0.16	1.7	98.3	0.0	3.40	1.29	0.54	0.79	2.46	11647	734	6	0	7	40	5904	logfile

• ← previous
• Page 5 of 372
• next →