Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PMC	13528	2022-12-12	2021-09-02	3.7	4.09	3.62	3.5	0.008	1.07	2.0	0.06	16.08	0.01	1.317	7.15	0.09	0.2	99.8	0.0	-1.41	0.89	0.80	2.38	3.5	0.003	0.69	1.0	0.04	16.20	0.00	2.033	10.62	0.09	1.6	98.4	0.0	1.52	1.34	0.90	0.82	1.85	10139	1258	6	0	5	0	0	logfile
✔	7PMJ	13536	2022-12-12	2021-09-02	3.4	4.31	3.37	3.3	0.010	1.11	2.0	0.06	15.32	0.01	1.310	6.69	0.09	0.2	99.8	0.0	-1.97	0.90	0.82	3.01	3.3	0.003	0.62	1.0	0.04	15.56	0.00	1.948	8.14	0.09	1.6	98.4	0.0	1.83	0.72	0.93	0.86	2.59	10085	1251	6	0	6	0	0	logfile
✔	7PMB	13527	2022-12-12	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	2.0	0.06	15.72	0.01	1.317	6.62	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.6	0.005	0.73	1.0	0.04	16.33	0.00	1.889	10.10	0.46	2.0	98.0	0.0	1.22	1.32	0.91	0.85	2.43	10113	1255	6	0	5	0	0	logfile
✔	7LMS	23441	2022-12-11	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.51	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	4.0	0.003	0.61	0.0	0.04	14.64	0.00	2.166	6.95	0.19	1.6	98.4	0.0	0.54	1.45	0.75	0.82	2.32	4947	613	4	0	1	0	0	logfile
✔	6XLA	22237	2022-12-11	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.56	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.54	0.0	0.04	20.69	0.00	2.128	4.91	0.41	3.0	97.0	0.0	-0.29	1.32	0.79	0.86	3.00	5403	536	6	46	2	0	0	logfile
✘	7PM1	13509	2022-12-18	2021-09-01	3.5	3.74	3.64	3.5	0.004	0.80	0.0	0.05	14.89	0.01	1.201	5.09	0.00	0.2	99.8	0.0	-1.54	0.89	0.84	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10169	1261	3	0	4	0	0	logfile
✘	7PM2	13510	2022-12-18	2021-09-01	3.6	3.83	3.61	3.6	0.004	0.82	0.0	0.05	15.46	0.01	1.201	4.80	0.00	0.2	99.8	0.0	-1.45	0.89	0.84	2.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10156	1259	3	0	4	0	0	logfile
✔	7PMD	13529	2022-12-12	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	2.0	0.06	14.84	0.01	1.314	3.76	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.003	0.64	1.0	0.04	15.46	0.00	1.996	6.47	0.46	1.8	98.2	0.0	1.71	1.26	0.93	0.88	2.98	10189	1264	6	0	6	0	0	logfile
✔	7PM7	13523	2022-12-12	2021-09-02	3.5	3.92	3.46	3.4	0.004	0.85	2.0	0.05	15.53	0.01	1.316	5.41	0.09	0.2	99.8	0.0	-1.31	0.90	0.84	3.49	3.5	0.003	0.68	1.0	0.04	15.67	0.00	1.948	8.38	0.19	1.8	98.2	0.0	1.80	2.26	0.90	0.85	2.78	10149	1260	6	0	5	0	0	logfile
✔	7PMF	13531	2022-12-12	2021-09-02	3.4	4.29	3.47	3.3	0.010	1.00	2.0	0.06	14.81	0.01	1.313	4.03	0.09	0.2	99.8	0.0	-1.44	0.91	0.83	3.07	3.3	0.003	0.61	1.0	0.04	15.08	0.00	1.970	7.11	0.09	1.1	98.9	0.0	1.88	1.69	0.94	0.88	2.42	10125	1256	6	0	6	0	0	logfile
✔	7PMi	13535	2022-12-12	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	3.0	0.07	15.30	0.01	1.306	5.14	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.3	0.003	0.67	1.0	0.04	15.61	0.00	2.043	7.76	0.09	1.5	98.5	0.0	1.37	0.66	0.94	0.88	2.59	10189	1264	6	0	6	0	0	logfile
✘	7PM0	13508	2022-12-18	2021-09-01	3.6	3.89	3.65	3.6	0.005	0.83	0.0	0.05	14.98	0.01	1.200	5.05	0.00	0.2	99.8	0.0	-1.27	0.90	0.85	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10169	1261	3	0	4	0	0	logfile
✔	7PLW	13504	2022-12-12	2021-09-01	3.5	4.05	3.55	3.5	0.005	0.84	1.0	0.05	15.08	0.01	1.323	4.86	0.00	0.2	99.8	0.0	-1.69	0.91	0.83	3.00	3.5	0.003	0.63	1.0	0.04	15.80	0.00	2.009	7.84	0.09	1.5	98.5	0.0	1.14	1.30	0.91	0.85	2.30	10139	1263	5	0	3	0	0	logfile
✔	7PLT	13501	2022-12-12	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	2.0	0.07	14.56	0.01	1.312	4.21	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.003	0.65	1.0	0.04	15.45	0.00	2.039	7.63	0.00	1.2	98.8	0.0	1.52	0.64	0.91	0.88	2.11	10148	1264	5	0	3	0	0	logfile
✔	6U1X	20614	2022-12-18	2019-08-17	3.0	3.37	3.11	3.3	0.004	0.55	0.0	0.04	10.38	0.00	1.986	3.85	0.11	0.3	99.7	0.0	-3.08	0.67	0.81	4.07	3.3	0.003	0.56	0.0	0.04	14.48	0.00	1.826	6.65	0.96	4.6	95.4	0.0	-0.16	2.28	0.68	0.83	3.57	33529	2087	3	0	2	0	16768	logfile
✔	6C9i	7436	2022-12-15	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	1.04	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.47	0.0	0.04	15.04	0.00	2.229	5.61	0.12	0.0	100.0	0.0	3.66	2.42	0.72	0.90	3.62	23700	3087	24	0	0	0	0	logfile
✔	7PM8	13524	2022-12-12	2021-09-02	3.5	3.91	3.50	3.4	0.004	0.88	2.0	0.05	15.57	0.01	1.316	6.55	0.09	0.3	99.7	0.0	-1.60	0.90	0.83	2.90	3.4	0.005	0.72	1.0	0.04	15.83	0.00	1.917	10.86	0.28	2.4	97.6	0.0	0.70	1.69	0.91	0.85	2.74	10149	1260	6	0	5	0	0	logfile
✔	7PM5	13521	2022-12-12	2021-09-02	3.1	3.88	3.26	3.5	0.005	0.83	2.0	0.05	14.75	0.01	1.317	4.65	0.09	0.3	99.7	0.0	-1.20	0.89	0.86	3.36	3.5	0.002	0.62	1.0	0.04	14.94	0.00	2.059	7.18	0.00	1.3	98.7	0.0	1.63	0.69	0.87	0.85	2.83	10171	1263	6	0	5	0	0	logfile
✔	7UiY	26557	2022-12-15	2022-03-29	3.22	3.19	—	3.2	0.006	0.86	0.0	0.04	14.26	0.00	1.981	3.51	0.00	0.3	99.7	0.0	-0.25	0.60	0.81	3.14	3.2	0.003	0.58	0.0	0.04	16.67	0.00	1.831	9.20	0.15	2.7	97.3	0.0	0.46	0.66	0.61	0.85	3.06	76262	4819	20	0	17	0	38283	logfile
✔	6T93	10408	2022-12-12	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.92	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.005	0.68	0.0	0.04	28.15	0.00	2.136	12.79	0.79	2.2	97.8	0.0	2.49	1.86	0.87	0.87	1.75	12199	758	10	302	0	0	0	logfile

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