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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MVU | 24056 | 2024-03-19 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 11.84 | 0.00 | 1.921 | 10.41 | 1.36 | 2.7 | 97.3 | 0.0 | 2.74 | 2.05 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 8J7V | 36050 | 2024-03-15 | 2023-04-28 | 2.79 | 2.88 | 2.79 | 2.8 | 0.004 | 0.73 | 0.0 | 0.05 | 16.71 | 0.01 | 2.208 | 7.08 | 1.54 | 3.3 | 96.7 | 0.0 | 0.39 | 0.62 | 0.79 | 2.92 | 2.8 | 0.003 | 0.66 | 0.0 | 0.04 | 17.00 | 0.00 | 2.187 | 9.81 | 2.67 | 2.8 | 97.2 | 0.0 | 1.42 | 0.87 | 0.73 | 0.80 | 2.97 | 11083 | 1432 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i4Y | 35188 | 2024-03-25 | 2023-01-21 | 3.84 | 3.60 | 3.74 | 3.6 | 0.012 | 1.83 | 12.0 | 0.10 | 12.83 | 0.02 | 2.536 | 0.04 | 1.16 | 3.9 | 96.1 | 0.0 | -0.81 | 0.80 | 0.73 | 2.97 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.13 | 0.00 | 1.887 | 5.22 | 1.16 | 2.8 | 97.2 | 0.0 | -0.15 | 1.56 | 0.82 | 0.80 | 1.77 | 49016 | 3374 | 4 | 0 | 4 | 0 | 24348 | logfile |
✔ | 6SEE | 10153 | 2024-03-15 | 2019-07-29 | 4.2 | 4.47 | — | 4.1 | 0.008 | 0.94 | 0.0 | 0.05 | 27.45 | 0.01 | 2.252 | 4.46 | 0.00 | 3.0 | 97.0 | 0.0 | -1.74 | 0.87 | 0.83 | — | 4.1 | 0.004 | 0.68 | 0.0 | 0.04 | 27.82 | 0.00 | 2.042 | 16.59 | 0.16 | 3.1 | 96.9 | 0.0 | 0.67 | 0.70 | 0.87 | 0.83 | — | 11949 | 756 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 7WUS | 32840 | 2024-03-10 | 2022-02-09 | 3.4 | 3.78 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.05 | 17.11 | 0.00 | 2.275 | 11.90 | 1.00 | 8.6 | 91.4 | 0.0 | -2.40 | 0.69 | 0.74 | 1.76 | 3.7 | 0.003 | 0.76 | 0.0 | 0.05 | 17.74 | 0.00 | 2.245 | 12.74 | 3.01 | 8.4 | 91.6 | 0.0 | -1.82 | 1.45 | 0.69 | 0.77 | 1.91 | 5450 | 682 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KGF | 22868 | 2024-03-19 | 2020-10-16 | 3.42 | 3.13 | — | 3.2 | 0.005 | 0.80 | 0.0 | 0.08 | 14.60 | 0.01 | 1.967 | 9.12 | 0.94 | 2.6 | 97.4 | 0.0 | 1.47 | 0.62 | 0.73 | 2.13 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.84 | 0.00 | 2.110 | 10.07 | 2.18 | 2.2 | 97.8 | 0.0 | 1.35 | 0.50 | 0.63 | 0.77 | 1.84 | 23355 | 3060 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TD5 | 10463 | 2024-03-25 | 2019-11-07 | 3.2 | 3.25 | 3.20 | 3.2 | 0.006 | 0.97 | 0.0 | 0.05 | 10.27 | 0.01 | 2.109 | 4.65 | 0.15 | 4.4 | 95.6 | 0.0 | -4.67 | 0.75 | 0.83 | 3.66 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.87 | 0.00 | 1.327 | 8.33 | 3.07 | 3.5 | 96.5 | 0.0 | -0.26 | 1.14 | 0.78 | 0.87 | 2.86 | 49408 | 6360 | 34 | 0 | 8 | 0 | 0 | logfile |
✔ | 6YBQ | 10771 | 2024-03-22 | 2020-03-17 | 1.96 | 2.06 | — | 2.0 | 0.039 | 1.58 | 0.0 | 0.05 | 15.03 | 0.01 | 1.550 | 5.79 | 0.00 | 2.7 | 97.3 | 0.0 | -1.94 | 0.82 | 0.87 | 6.46 | 2.0 | 0.003 | 0.70 | 0.0 | 0.05 | 15.85 | 0.00 | 2.125 | 5.50 | 0.70 | 2.5 | 97.5 | 0.0 | 0.14 | 0.45 | 0.85 | 0.90 | 6.02 | 34092 | 4289 | 36 | 0 | 12 | 871 | 0 | logfile |
✔ | 6SEF | 10154 | 2024-03-15 | 2019-07-29 | 3.7 | 4.25 | — | 3.6 | 0.007 | 0.85 | 0.0 | 0.05 | 27.69 | 0.00 | 2.225 | 4.94 | 0.00 | 2.7 | 97.3 | 0.0 | -2.10 | 0.88 | 0.84 | 2.28 | 3.5 | 0.006 | 0.72 | 0.0 | 0.04 | 28.62 | 0.00 | 2.053 | 18.32 | 4.34 | 2.9 | 97.1 | 0.0 | 1.05 | 0.68 | 0.89 | 0.85 | 2.06 | 11919 | 751 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6RiE | 4890 | 2024-03-25 | 2019-04-23 | 3.1 | 3.16 | 2.97 | 3.1 | 0.006 | 0.76 | 0.0 | 0.05 | 15.31 | 0.01 | 2.067 | 4.42 | 0.07 | 4.2 | 95.8 | 0.0 | -3.21 | 0.80 | 0.85 | 3.51 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 16.24 | 0.00 | 1.384 | 8.30 | 2.15 | 3.6 | 96.4 | 0.0 | -0.07 | 0.38 | 0.82 | 0.87 | 3.10 | 36583 | 4418 | 17 | 41 | 7 | 0 | 0 | logfile |
✔ | 7F8J | 31489 | 2024-03-17 | 2021-07-02 | 3.6 | 3.73 | 3.52 | 3.7 | 0.010 | 1.62 | 0.0 | 0.04 | 20.22 | 0.00 | 2.215 | 7.08 | 1.04 | 5.8 | 94.2 | 0.0 | 0.64 | 0.63 | 0.84 | 2.72 | 3.7 | 0.003 | 1.41 | 0.0 | 0.04 | 16.25 | 0.00 | 2.273 | 8.00 | 1.98 | 5.3 | 94.7 | 0.0 | 1.29 | 1.21 | 0.61 | 0.84 | 2.69 | 18984 | 2240 | 14 | 0 | 42 | 0 | 0 | logfile |
✔ | 7QDS | 13925 | 2024-03-16 | 2021-11-30 | 3.8 | 3.53 | 3.57 | 3.7 | 0.005 | 0.86 | 1.0 | 0.05 | 14.59 | 0.01 | 2.067 | 14.28 | 0.00 | 5.7 | 94.3 | 0.0 | -0.33 | 0.80 | 0.82 | 1.63 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 16.55 | 0.00 | 2.133 | 8.83 | 2.36 | 10.4 | 89.6 | 0.0 | 0.01 | 1.19 | 0.80 | 0.82 | 1.22 | 13798 | 1771 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TDo | 25837 | 2024-03-18 | 2022-01-02 | 3.15 | 4.00 | — | 3.7 | 0.004 | 0.57 | 0.0 | 0.04 | 14.51 | 0.00 | 2.284 | 4.72 | 0.00 | 4.1 | 95.9 | 0.0 | -1.16 | 0.73 | 0.68 | 1.65 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 14.69 | 0.00 | 2.230 | 4.92 | 0.59 | 3.9 | 96.1 | 0.0 | 1.21 | 0.61 | 0.86 | 0.85 | 1.79 | 19572 | 2520 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 8DDR | 27339 | 2024-03-22 | 2022-06-18 | 3.2 | 2.96 | 3.18 | 3.2 | 0.015 | 0.94 | 0.0 | 0.07 | 11.80 | 0.00 | 2.251 | 5.05 | 1.77 | 3.3 | 96.7 | 0.0 | 1.33 | 0.82 | 0.82 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32074 | 3872 | 12 | 0 | 78 | 0 | 0 | logfile |
✔ | 7AAP | 11692 | 2024-03-14 | 2020-09-04 | 2.5 | 2.71 | 2.48 | 2.8 | 0.006 | 0.53 | 0.0 | 0.04 | 13.52 | 0.00 | 2.097 | 3.69 | 0.20 | 1.5 | 98.5 | 0.0 | 0.59 | 0.79 | 0.87 | 4.74 | 2.7 | 0.004 | 0.57 | 0.0 | 0.04 | 15.34 | 0.00 | 2.179 | 5.80 | 1.11 | 2.3 | 97.7 | 0.0 | 0.43 | 0.82 | 0.80 | 0.91 | 4.40 | 9446 | 1120 | 9 | 21 | 7 | 0 | 0 | logfile |
✔ | 7Sii | 25142 | 2024-03-18 | 2021-10-14 | 3.45 | 3.63 | — | 3.6 | 0.008 | 0.74 | 0.0 | 0.03 | 13.75 | 0.00 | 2.220 | 5.25 | 2.21 | 2.9 | 97.1 | 0.0 | 2.94 | 0.64 | 0.79 | 2.61 | 3.6 | 0.004 | 0.53 | 0.0 | 0.03 | 15.14 | 0.00 | 2.112 | 7.34 | 1.75 | 3.1 | 96.9 | 0.0 | 2.66 | 0.49 | 0.66 | 0.83 | 1.87 | 20484 | 1286 | 8 | 0 | 4 | 0 | 10184 | logfile |
✔ | 7USE | 26734 | 2024-03-19 | 2022-04-25 | 3.0 | 3.34 | 2.99 | 3.3 | 0.005 | 0.79 | 0.0 | 0.05 | 13.68 | 0.00 | 1.840 | 6.47 | 0.19 | 1.5 | 98.5 | 0.0 | 3.40 | 0.87 | 0.78 | 2.35 | 3.2 | 0.004 | 0.80 | 0.0 | 0.04 | 16.74 | 0.00 | 2.084 | 10.02 | 1.54 | 2.4 | 97.6 | 0.0 | 1.83 | 2.27 | 0.87 | 0.84 | 1.66 | 23913 | 2954 | 9 | 0 | 4 | 0 | 0 | logfile |
✘ | 8DBi | 27285 | 2024-03-16 | 2022-06-14 | 2.0 | 2.07 | 2.03 | 2.0 | 0.012 | 1.17 | 0.0 | 0.06 | 18.16 | 0.04 | 1.910 | 5.92 | 1.15 | 4.3 | 95.7 | 0.0 | 0.57 | 0.73 | 0.87 | 6.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14496 | 1854 | 18 | 0 | 30 | 12 | 0 | logfile |
✔ | 7UGN | 26490 | 2024-03-20 | 2022-03-25 | 3.4 | 3.60 | 3.35 | 3.4 | 0.004 | 0.65 | 0.0 | 0.19 | 15.93 | 0.01 | 0.844 | 6.76 | 0.11 | 4.5 | 95.5 | 0.0 | -3.47 | 0.83 | 0.84 | 2.43 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 15.11 | 0.00 | 2.186 | 8.23 | 4.25 | 6.3 | 93.7 | 0.0 | -1.83 | 1.00 | 0.84 | 0.88 | 2.36 | 25698 | 3150 | 49 | 0 | 87 | 0 | 0 | logfile |
✔ | 7YHQ | 33836 | 2024-03-10 | 2022-07-14 | 3.9 | 3.34 | 3.84 | 3.3 | 0.005 | 0.91 | 0.0 | 0.06 | 23.98 | 0.01 | 2.249 | 15.40 | 2.00 | 8.6 | 91.4 | 0.0 | -0.58 | 0.74 | 0.72 | 0.99 | 3.2 | 0.003 | 0.69 | 0.0 | 0.04 | 23.75 | 0.00 | 2.139 | 15.78 | 1.71 | 8.1 | 91.9 | 0.0 | -0.69 | 0.66 | 0.74 | 0.74 | 0.99 | 4065 | 393 | 4 | 42 | 2 | 0 | 0 | logfile |