Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S44	10097	2023-04-24	2019-06-26	3.19	3.30	3.41	3.2	0.010	0.92	0.0	0.06	16.63	0.01	2.324	10.10	11.02	9.7	90.3	0.0	-3.81	0.71	0.82	3.28	3.2	0.007	0.76	0.0	0.05	16.97	0.01	2.148	22.58	1.13	12.4	87.6	0.0	-2.84	0.69	0.73	0.85	3.37	67200	8760	60	0	0	0	0	logfile
✔	7CN0	30412	2023-04-20	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.003	0.66	0.0	0.04	15.71	0.00	2.242	11.10	0.00	7.3	92.7	0.0	0.18	0.59	0.55	0.77	1.69	6602	884	5	0	2	0	0	logfile
✔	7L8C	23229	2023-04-23	2020-12-31	3.4	3.54	3.26	3.5	0.026	1.74	5.0	0.16	10.04	0.01	2.049	1.27	0.00	1.7	98.3	0.0	0.69	0.73	0.87	4.33	3.5	0.003	0.60	0.0	0.04	14.27	0.00	2.167	5.39	0.07	2.0	98.0	0.0	-0.01	1.22	0.71	0.86	3.12	15963	1691	56	0	331	0	0	logfile
✔	7XN4	33310	2023-04-20	2022-04-28	3.35	3.60	3.25	3.5	0.005	0.79	1.0	0.05	14.68	0.01	2.223	8.84	0.70	9.8	90.2	0.0	-2.93	0.79	0.81	2.84	3.5	0.004	0.64	0.0	0.04	16.31	0.00	2.141	10.02	0.56	9.4	90.6	0.0	-2.30	0.94	0.80	0.84	2.33	6859	859	5	0	1	0	0	logfile
✔	7QTL	14144	2023-04-24	2022-01-14	2.48	2.85	2.48	2.5	0.007	0.66	0.0	0.04	17.25	0.01	1.988	8.61	3.98	2.4	97.6	0.0	-1.53	0.89	0.86	4.27	2.5	0.002	0.55	0.0	0.04	17.21	0.00	1.460	7.67	2.04	1.9	98.1	0.0	0.95	4.18	0.91	0.90	3.84	18397	2152	14	44	4	120	0	logfile
✔	7R1F	14240	2023-04-24	2022-02-02	2.58	3.46	2.66	2.8	0.009	0.62	0.0	0.04	12.11	0.00	2.035	6.90	2.31	3.5	96.5	0.0	0.37	0.91	0.84	3.29	2.9	0.003	0.66	0.0	0.04	13.86	0.00	1.997	9.15	1.47	2.8	97.1	0.0	0.76	2.67	0.92	0.90	3.29	18372	2177	11	42	6	6	0	logfile
✔	7T67	25711	2023-04-27	2021-12-13	3.0	4.53	3.13	3.0	0.004	0.76	0.0	0.05	13.07	0.01	2.074	5.55	0.00	2.8	97.2	0.0	-0.16	0.85	0.80	2.60	3.0	0.003	0.60	0.0	0.04	14.43	0.00	2.142	8.29	0.56	3.2	96.8	0.0	0.42	0.48	0.88	0.86	2.41	24753	3075	9	0	51	0	0	logfile
✔	7AF8	11756	2023-04-24	2020-09-19	2.75	3.17	2.81	2.9	0.006	0.63	4.0	0.04	13.69	0.02	2.002	6.53	0.00	3.6	96.4	0.0	-0.93	0.84	0.87	2.54	3.0	0.003	0.66	0.0	0.03	15.02	0.01	1.996	10.15	3.15	4.4	95.5	0.1	0.97	0.53	0.85	0.89	2.02	18565	1109	11	456	52	0	0	logfile
✔	7TZF	26208	2023-04-21	2022-02-15	2.4	2.00	2.20	2.3	0.004	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.002	0.55	0.0	0.04	16.89	0.00	2.212	5.33	1.72	1.7	98.3	0.0	0.92	0.83	0.56	0.82	4.60	10342	1272	13	0	19	25	0	logfile
✔	7BoK	30131	2023-04-29	2020-03-19	3.7	3.80	3.93	3.7	0.009	0.92	0.0	0.05	14.40	0.01	2.036	8.66	0.00	4.6	95.4	0.0	-3.42	0.78	0.82	2.36	3.7	0.004	0.68	0.0	0.04	15.87	0.00	2.163	14.82	0.42	4.8	95.2	0.0	-0.37	1.27	0.79	0.84	2.14	29112	3708	24	0	12	0	0	logfile
✔	7L8U	23237	2023-04-23	2021-01-01	4.5	4.63	4.35	4.5	0.021	1.77	2.0	0.14	11.10	0.02	2.199	2.59	0.00	2.9	97.1	0.0	0.24	0.73	0.78	—	4.5	0.004	0.75	0.0	0.05	13.16	0.00	2.031	14.03	0.07	5.0	95.0	0.0	-0.83	0.99	0.73	0.81	—	15475	1675	25	0	300	0	0	logfile
✔	7RTU	24689	2023-04-20	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	14.31	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.56	0.0	0.04	16.58	0.00	2.211	7.03	0.31	2.4	97.6	0.0	4.14	0.30	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	6XiW	22203	2023-04-22	2020-06-22	2.8	3.04	—	3.0	0.005	0.86	0.0	0.04	15.93	0.00	2.257	2.98	0.79	3.8	96.2	0.0	-1.79	0.55	0.85	3.36	3.0	0.002	0.54	0.0	0.04	17.30	0.00	2.240	5.88	1.82	2.2	97.8	0.0	2.00	2.52	0.53	0.87	2.47	11819	1400	4	0	12	5	0	logfile
✘	6VXK	21442	2023-04-24	2020-02-22	3.1	3.57	—	3.2	0.011	0.84	0.0	0.05	14.73	0.00	2.122	15.37	8.05	10.5	89.5	0.0	-3.69	0.86	0.88	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17418	2254	8	0	18	0	0	logfile
✔	7oLA	12975	2023-04-25	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	15.07	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	3.3	0.002	0.49	0.0	0.04	15.96	0.00	1.985	8.52	0.00	2.6	97.4	0.0	1.16	0.89	0.88	0.89	2.86	19719	2394	10	0	7	0	0	logfile
✔	7K36	22650	2023-04-24	2020-09-10	3.3	3.90	—	3.5	0.007	0.74	0.0	0.18	15.82	0.00	1.054	15.42	7.26	6.0	94.0	0.0	-2.36	0.84	0.85	2.39	3.5	0.003	0.66	0.0	0.04	16.24	0.00	2.072	11.60	0.18	3.3	96.7	0.0	1.58	0.60	0.84	0.86	1.82	16613	2183	12	0	5	0	0	logfile
✔	8HMV	34903	2023-04-20	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.49	0.0	0.04	15.50	0.00	2.170	4.71	0.45	2.6	97.4	0.0	0.81	0.37	0.66	0.87	3.21	8127	1022	5	0	0	0	0	logfile
✔	6VTK	21380	2023-04-21	2020-02-12	2.82	3.35	—	3.3	0.005	0.82	0.0	0.05	8.89	0.01	2.287	3.10	0.00	3.2	96.8	0.0	-4.44	0.71	0.81	4.37	3.3	0.003	0.63	0.0	0.04	13.86	0.00	2.103	6.44	1.23	1.8	98.2	0.0	-0.19	1.19	0.71	0.83	3.86	10686	1338	6	0	6	0	0	logfile
✔	7To3	26028	2023-04-23	2022-01-22	2.74	3.49	2.83	3.3	0.002	0.54	0.0	0.04	11.67	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.60	0.0	0.04	13.99	0.00	1.099	4.47	1.10	1.9	98.1	0.0	0.83	1.34	0.82	0.85	4.02	14764	1850	6	0	10	0	0	logfile
✔	7L8X	23239	2023-04-23	2021-01-01	3.0	4.09	3.80	4.0	0.022	1.70	0.0	0.14	10.32	0.02	2.275	1.13	0.00	2.1	97.9	0.0	0.95	0.70	0.77	2.79	4.0	0.005	0.83	0.0	0.05	15.94	0.00	2.139	9.87	3.66	3.8	96.1	0.1	-0.40	1.34	0.65	0.78	2.35	16090	1721	37	0	318	0	0	logfile

• ← previous
• Page 5 of 372
• next →