Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T2H	25613	2023-09-29	2021-12-04	3.2	3.41	3.23	3.4	0.004	0.52	0.0	0.15	14.12	0.00	2.158	8.69	0.65	3.6	96.4	0.0	-3.17	0.66	0.81	3.01	3.4	0.004	0.71	0.0	0.09	15.51	0.00	2.167	10.26	0.43	2.7	97.3	0.0	-0.64	0.42	0.60	0.79	2.44	8677	1119	5	0	1	0	0	logfile
✔	7D7M	30608	2023-09-29	2020-10-05	3.3	2.94	3.16	3.3	0.004	0.64	0.0	0.06	14.43	0.00	2.208	10.07	0.00	1.3	98.7	0.0	0.14	0.64	0.75	2.13	3.3	0.003	0.63	0.0	0.04	15.19	0.00	2.189	9.64	0.44	2.1	97.9	0.0	0.75	0.55	0.62	0.77	1.71	7326	1031	6	0	1	0	0	logfile
✔	7KTU	23030	2023-09-28	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.91	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.79	0.0	0.04	13.23	0.00	2.086	18.78	0.00	3.4	96.6	0.0	-0.16	0.95	0.80	0.76	—	7577	995	1	0	0	0	0	logfile
✔	6BGi	7095	2023-09-28	2017-10-28	3.8	4.07	3.58	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.38	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.004	0.86	0.0	0.04	14.96	0.00	1.980	17.77	0.65	11.9	88.1	0.0	-2.04	1.10	0.48	0.66	1.53	7774	1020	4	0	4	0	0	logfile
✔	7EVP	31339	2023-09-28	2021-05-21	3.2	3.77	—	3.7	0.008	0.87	0.0	0.06	9.80	0.01	2.328	3.80	0.26	6.2	93.8	0.0	-5.27	0.64	0.77	3.74	3.6	0.003	0.62	0.0	0.05	13.72	0.00	2.294	8.36	0.40	5.6	94.4	0.0	-1.84	0.63	0.69	0.81	2.98	6616	840	4	0	0	0	0	logfile
✘	8EFQ	28088	2023-09-28	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	0.0	0.05	8.64	0.01	2.298	3.12	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7046	892	6	0	2	0	0	logfile
✔	7S1Z	24813	2023-09-28	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.11	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.004	0.63	0.0	0.04	14.70	0.00	2.159	10.34	0.18	9.3	90.7	0.0	-0.08	0.47	0.47	0.69	1.74	6416	944	2	0	0	0	0	logfile
✔	8DNF	27565	2023-09-30	2022-07-11	3.38	3.71	3.49	3.9	0.005	0.68	0.0	0.04	15.96	0.01	2.266	4.74	0.79	2.8	97.2	0.0	-0.81	0.56	0.81	1.68	3.9	0.005	0.71	0.0	0.05	16.55	0.00	1.847	4.99	0.32	5.6	94.4	0.0	-1.11	1.07	0.66	0.89	1.70	11812	1496	8	0	12	0	0	logfile
✔	8C4U	16429	2023-09-30	2023-01-04	3.36	3.57	3.40	3.5	0.005	0.74	1.0	0.05	16.57	0.00	2.058	7.62	0.81	3.7	96.3	0.0	0.43	0.77	0.83	2.59	3.5	0.004	0.54	0.0	0.04	16.87	0.00	2.035	7.76	0.36	3.5	96.5	0.0	1.25	1.14	0.80	0.85	2.60	10952	1260	4	38	1	0	0	logfile
✘	7AHE	11784	2023-09-30	2020-09-24	4.1	4.22	4.11	4.1	0.009	1.23	0.0	0.09	12.74	0.00	2.205	16.70	0.45	9.6	90.4	0.0	-5.40	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10060	1308	5	0	1	0	0	logfile
✔	7F1Q	31422	2023-09-29	2021-06-09	2.9	3.05	—	3.1	0.002	0.55	0.0	0.04	12.03	0.00	2.264	10.21	0.27	2.6	97.4	0.0	-1.52	0.58	0.72	2.25	3.1	0.003	0.62	0.0	0.04	15.78	0.00	2.108	12.36	2.44	3.2	96.8	0.0	0.60	0.68	0.61	0.80	3.52	7123	938	4	0	0	0	0	logfile
✔	7KTW	23032	2023-09-28	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.80	0.0	0.04	13.32	0.00	2.163	18.78	0.12	3.4	96.6	0.0	0.23	0.96	0.80	0.79	—	7577	995	1	0	0	0	0	logfile
✔	7EW4	31347	2023-09-29	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.43	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.002	0.52	0.0	0.04	15.13	0.00	2.101	8.96	0.62	2.8	97.2	0.0	0.62	0.39	0.70	0.81	2.46	8929	1145	6	0	3	0	0	logfile
✔	7EW7	31349	2023-09-30	2021-05-24	3.27	3.91	—	3.9	0.003	0.59	0.0	0.04	13.52	0.00	2.016	6.73	0.71	3.6	96.4	0.0	-2.17	0.56	0.74	2.49	3.9	0.002	0.54	0.0	0.04	15.58	0.00	2.134	6.73	0.20	3.8	96.2	0.0	-0.29	0.95	0.60	0.78	1.96	9004	1144	6	0	1	0	0	logfile
✔	8GS4	34220	2023-09-28	2022-09-04	3.5	3.66	3.52	3.7	0.004	0.83	0.0	0.05	13.58	0.01	2.251	11.71	0.00	13.3	86.7	0.0	-4.70	0.69	0.75	2.42	3.7	0.003	0.77	0.0	0.04	15.61	0.01	2.148	10.85	0.23	11.3	88.7	0.0	-3.30	0.39	0.67	0.75	1.27	8250	1050	2	0	0	0	0	logfile
✔	7Y9T	33691	2023-09-28	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.305	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.003	0.67	0.0	0.04	13.62	0.00	2.220	5.37	0.36	4.5	95.5	0.0	-1.47	0.59	0.67	0.87	3.20	7726	992	4	0	0	0	0	logfile
✔	7XBW	33107	2023-09-28	2022-03-22	2.8	3.01	2.74	3.1	0.005	0.54	0.0	0.04	11.71	0.00	2.251	6.45	0.00	2.6	97.4	0.0	1.47	0.60	0.72	2.24	3.1	0.003	0.60	0.0	0.04	15.13	0.00	2.096	10.82	2.27	2.4	97.6	0.0	0.64	1.57	0.58	0.76	2.44	6663	886	4	0	3	0	0	logfile
✔	7X9C	33071	2023-09-28	2022-03-15	3.0	3.24	—	3.2	0.002	0.52	0.0	0.04	10.16	0.00	2.208	8.69	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.004	0.72	0.0	0.04	14.54	0.00	2.141	12.76	2.39	3.1	96.9	0.0	-0.27	0.64	0.60	0.78	1.79	7219	945	5	0	0	0	0	logfile
✔	7Eo2	31225	2023-09-29	2021-04-21	2.89	3.28	—	3.4	0.005	0.77	0.0	0.05	13.25	0.00	2.152	0.90	0.00	4.1	95.9	0.0	-0.60	0.59	0.72	2.59	3.4	0.003	0.61	0.0	0.04	15.32	0.00	2.143	7.00	1.75	3.0	97.0	0.0	1.01	0.50	0.49	0.66	2.06	8865	1126	6	0	1	0	0	logfile
✔	6W8o	21576	2023-09-28	2020-03-20	3.4	4.30	—	4.1	0.029	1.20	3.0	0.05	17.62	0.01	1.161	20.04	11.79	6.7	93.3	0.0	-3.22	0.57	0.81	1.49	4.1	0.005	0.97	0.0	0.05	17.25	0.00	2.031	19.32	0.75	6.9	93.1	0.0	-0.03	1.18	0.55	0.78	1.50	6332	832	2	0	0	0	0	logfile

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