Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q4P	13812	2022-12-13	2021-11-01	2.15	2.69	2.22	2.5	0.012	1.86	41.0	0.13	17.43	0.03	2.134	3.58	1.95	2.6	97.4	0.0	-1.82	0.79	0.90	5.51	2.5	0.003	0.79	0.0	0.04	18.06	0.01	2.130	7.04	0.45	2.1	97.9	0.0	0.92	1.12	0.77	0.91	5.54	13451	1535	17	45	5	241	0	logfile
✔	7TF6	25863	2022-12-21	2022-01-06	2.15	2.26	—	2.3	0.002	0.51	0.0	0.04	16.47	0.00	2.048	4.68	1.34	3.7	96.3	0.0	0.26	0.48	0.71	5.34	2.3	0.004	0.61	0.0	0.04	17.57	0.00	1.862	10.59	1.47	4.7	95.3	0.0	0.29	1.34	0.71	0.87	5.48	43272	5400	36	0	24	0	120	logfile
✔	8A2Z	15109	2022-12-13	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.002	0.57	0.0	0.04	15.42	0.00	2.061	4.38	0.65	1.7	98.3	0.0	1.21	1.46	0.74	0.89	5.74	15060	1830	15	0	10	570	0	logfile
✔	8A2Y	15108	2022-12-13	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.56	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.004	0.67	0.0	0.05	15.94	0.00	2.130	4.30	0.77	1.2	98.8	0.0	0.86	0.80	0.72	0.89	6.16	15078	1835	15	0	15	528	0	logfile
✔	7S4J	24828	2022-12-21	2021-09-09	2.16	2.44	—	2.5	0.009	1.07	1.0	0.05	19.63	0.00	1.948	14.08	4.30	5.2	94.3	0.5	0.65	0.75	0.84	4.80	2.4	0.003	0.64	0.0	0.05	17.53	0.00	1.962	9.05	2.83	4.9	94.8	0.3	0.60	0.34	0.78	0.91	4.74	22780	2577	27	0	63	304	0	logfile
✔	8DLW	27518	2022-12-16	2022-07-08	2.16	3.12	2.26	2.6	0.006	1.02	0.0	0.06	10.93	0.01	2.290	2.05	0.19	2.3	97.7	0.1	0.82	0.87	0.86	4.36	2.6	0.004	0.65	0.0	0.04	13.69	0.00	2.152	7.00	1.03	2.6	97.4	0.0	0.88	2.12	0.88	0.89	4.09	30267	3768	33	0	78	0	0	logfile
✔	7UZQ	26916	2022-12-14	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.98	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.63	0.0	0.04	16.13	0.00	2.124	5.96	2.27	1.9	98.0	0.1	1.73	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	8A2R	15104	2022-12-13	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.003	0.61	0.0	0.04	16.77	0.00	1.903	3.02	0.90	1.7	98.3	0.0	1.18	1.16	0.73	0.90	5.74	14990	1830	15	0	15	480	0	logfile
✔	7NKJ	12441	2022-12-21	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.92	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.97	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	6KQK	0753	2022-12-12	2019-08-18	2.17	3.14	—	2.8	0.018	1.17	12.0	0.06	14.73	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	2.0	0.12	15.48	0.00	1.779	9.80	0.53	4.0	96.0	0.0	0.22	0.79	0.82	0.86	4.19	63373	3936	24	0	48	0	31225	logfile
✔	7FGH	31581	2022-12-21	2021-07-27	2.18	2.32	—	2.3	0.009	1.03	0.0	0.06	16.15	0.01	2.118	1.69	1.31	3.8	96.2	0.0	-0.25	0.77	0.80	5.03	2.3	0.002	0.54	0.0	0.04	16.34	0.00	2.267	2.06	0.98	2.2	97.8	0.0	0.33	0.91	0.82	0.89	4.58	44532	5448	36	12	12	1416	0	logfile
✔	7MXY	24076	2022-12-14	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.77	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.007	0.69	0.0	0.04	18.22	0.00	1.943	16.26	5.28	4.2	95.8	0.0	0.30	1.13	0.53	0.69	2.48	22265	1406	12	0	5	2	11129	logfile
✔	7FGG	31580	2022-12-21	2021-07-27	2.19	2.26	—	2.2	0.010	1.05	0.0	0.06	17.46	0.01	2.005	2.76	2.08	3.8	96.2	0.0	-0.12	0.76	0.80	5.14	2.2	0.003	0.68	0.0	0.05	17.68	0.00	1.960	2.01	1.71	3.4	96.6	0.0	0.48	0.29	0.80	0.89	5.23	45132	5424	36	0	36	1764	0	logfile
✔	7VQo	32091	2022-12-20	2021-10-20	2.19	3.23	2.29	3.0	0.008	0.75	0.0	0.05	17.42	0.00	1.865	12.29	3.25	9.3	90.7	0.0	-1.44	0.58	0.80	3.45	3.0	0.004	0.64	0.0	0.04	17.53	0.00	1.944	11.46	2.66	7.6	92.4	0.0	-0.81	0.30	0.57	0.79	3.25	38640	4720	12	0	4	688	0	logfile
✔	7ST9	25422	2022-12-21	2021-11-12	2.2	2.95	—	2.8	0.002	0.46	0.0	0.04	16.91	0.00	1.796	3.03	0.71	1.5	98.5	0.0	2.56	0.82	0.78	3.47	2.8	0.009	0.61	0.0	0.04	17.48	0.00	1.771	4.20	1.23	1.4	98.6	0.0	2.24	2.70	0.82	0.86	3.56	46553	2802	25	36	9	423	22930	logfile
✔	7TYF	26178	2022-12-12	2022-02-13	2.2	2.16	2.13	2.2	0.004	0.57	0.0	0.04	14.43	0.00	2.234	5.27	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.60	0.0	0.04	16.06	0.00	2.182	6.69	1.16	2.2	97.8	0.0	0.67	0.50	0.67	0.86	4.69	10331	1266	12	0	16	83	0	logfile
✔	7P8W	13256	2022-12-13	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	2.04	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.62	0.0	0.04	15.61	0.00	2.221	3.56	0.46	2.9	97.1	0.0	0.56	1.15	0.85	0.91	6.13	17668	2008	12	0	8	1110	0	logfile
✔	6DRV	8908	2022-12-18	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.44	0.0	0.08	12.56	0.02	2.116	4.83	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32888	4096	4	0	0	0	0	logfile
✔	5A1A	2984	2022-12-18	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.28	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.74	0.0	0.05	17.59	0.00	1.925	12.64	2.89	3.2	96.7	0.1	-0.61	0.61	0.53	0.79	3.95	33696	4088	12	0	20	776	0	logfile
✔	7LXY	23579	2022-12-18	2021-03-05	2.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33987	4446	36	0	69	729	0	logfile

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