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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YK5 | 33887 | 2024-03-24 | 2022-07-21 | 2.0 | 1.66 | — | 1.9 | 0.014 | 1.49 | 0.0 | 0.09 | 17.33 | 0.00 | 2.157 | 4.91 | 7.75 | 4.0 | 96.0 | 0.0 | -2.45 | 0.38 | 0.48 | 6.60 | 1.9 | 0.005 | 0.77 | 0.0 | 0.05 | 16.41 | 0.01 | 2.346 | 1.79 | 1.20 | 2.7 | 97.3 | 0.0 | -0.03 | 1.29 | 0.81 | 0.84 | 6.70 | 39948 | 5064 | 36 | 0 | 8 | 0 | 0 | logfile |
✔ | 8F2B | 28812 | 2024-03-15 | 2022-11-07 | 2.0 | 1.79 | 2.02 | 1.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.23 | 0.00 | 2.278 | 5.13 | 1.32 | 1.0 | 99.0 | 0.0 | -2.02 | 0.54 | 0.74 | 4.60 | 1.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.03 | 0.00 | 2.172 | 6.20 | 1.98 | 2.6 | 97.4 | 0.0 | 1.21 | 0.96 | 0.55 | 0.75 | 5.08 | 10360 | 1273 | 12 | 0 | 16 | 31 | 0 | logfile |
✔ | 8F0J | 28758 | 2024-03-14 | 2022-11-03 | 2.0 | 1.77 | 1.94 | 1.9 | 0.005 | 0.61 | 1.0 | 0.05 | 15.42 | 0.00 | 2.246 | 4.03 | 0.40 | 1.1 | 98.9 | 0.0 | -1.49 | 0.53 | 0.75 | 5.18 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 17.18 | 0.00 | 2.218 | 5.84 | 1.72 | 2.3 | 97.7 | 0.0 | 1.49 | 0.83 | 0.54 | 0.78 | 5.65 | 9678 | 1157 | 11 | 0 | 18 | 25 | 0 | logfile |
✘ | 8DBi | 27285 | 2024-03-16 | 2022-06-14 | 2.0 | 2.07 | 2.03 | 2.0 | 0.012 | 1.17 | 0.0 | 0.06 | 18.16 | 0.04 | 1.910 | 5.92 | 1.15 | 4.3 | 95.7 | 0.0 | 0.57 | 0.73 | 0.87 | 6.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14496 | 1854 | 18 | 0 | 30 | 12 | 0 | logfile |
✔ | 7oAE | 12775 | 2024-03-15 | 2021-04-19 | 2.0 | 2.65 | — | 2.2 | 0.008 | 0.53 | 0.0 | 0.05 | 9.44 | 0.00 | 2.440 | 0.99 | 0.00 | 2.6 | 97.4 | 0.0 | 0.22 | 0.77 | 0.91 | 6.46 | 2.2 | 0.002 | 0.51 | 0.0 | 0.04 | 14.93 | 0.00 | 2.243 | 6.08 | 0.61 | 1.5 | 98.5 | 0.0 | 0.51 | 2.66 | 0.78 | 0.93 | 6.29 | 12768 | 1680 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2024-03-10 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 7RCV | 24407 | 2024-03-11 | 2021-07-08 | 2.01 | 1.78 | — | 1.9 | 0.024 | 2.38 | 0.0 | 0.11 | 22.23 | 0.01 | 1.915 | 13.94 | 1.99 | 2.6 | 97.4 | 0.0 | 0.92 | 0.78 | 0.79 | 5.10 | 1.9 | 0.005 | 0.86 | 0.0 | 0.05 | 18.39 | 0.01 | 2.031 | 12.38 | 1.91 | 2.9 | 97.1 | 0.0 | 0.64 | 0.35 | 0.81 | 0.84 | 5.28 | 54656 | 5544 | 114 | 0 | 228 | 1236 | 0 | logfile |
✔ | 8G6W | 29786 | 2024-03-22 | 2023-02-16 | 2.02 | 2.04 | 2.01 | 2.0 | 0.006 | 0.81 | 0.0 | 0.04 | 23.38 | 0.02 | 1.223 | 9.47 | 6.74 | 4.1 | 95.8 | 0.1 | -2.71 | 0.75 | 0.81 | 4.45 | 2.0 | 0.006 | 0.91 | 0.0 | 0.05 | 23.12 | 0.01 | 1.704 | 8.34 | 3.04 | 4.4 | 95.5 | 0.1 | -0.46 | 0.49 | 0.78 | 0.87 | 4.78 | 145749 | 5585 | 97 | 4556 | 348 | 3659 | 0 | logfile |
✔ | 8Q27 | 18070 | 2024-03-11 | 2023-08-01 | 2.02 | 1.98 | 1.92 | 2.0 | 0.011 | 1.74 | 0.0 | 0.08 | 11.92 | 0.01 | 2.517 | 0.00 | 1.27 | 2.3 | 97.7 | 0.0 | -1.63 | 0.21 | 0.69 | 8.02 | 2.0 | 0.003 | 0.55 | 0.0 | 0.05 | 15.86 | 0.00 | 2.283 | 1.43 | 0.00 | 2.7 | 97.3 | 0.0 | -1.21 | 0.87 | 0.34 | 0.88 | 7.45 | 7002 | 453 | 6 | 0 | 0 | 0 | 3567 | logfile |
✔ | 8UF0 | 42181 | 2024-03-20 | 2023-10-03 | 2.02 | 2.34 | 2.08 | 2.2 | 0.007 | 0.76 | 0.0 | 0.05 | 17.50 | 0.01 | 0.013 | 4.37 | 0.54 | 1.8 | 98.2 | 0.0 | 0.09 | 0.84 | 0.89 | 5.17 | 2.2 | 0.003 | 0.62 | 0.0 | 0.05 | 17.90 | 0.01 | 2.125 | 3.00 | 1.19 | 1.1 | 98.9 | 0.0 | 1.26 | 0.34 | 0.82 | 0.88 | 4.15 | 27000 | 3456 | 48 | 0 | 0 | 804 | 0 | logfile |
✘ | 8PN7 | 17777 | 2024-03-23 | 2023-06-30 | 2.03 | 2.46 | 2.13 | 2.4 | 0.044 | 1.46 | 0.0 | 0.04 | 13.01 | 0.00 | 1.664 | 8.62 | 0.35 | 1.5 | 98.5 | 0.0 | 1.20 | 0.72 | 0.85 | 5.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34872 | 4308 | 36 | 0 | 12 | 1476 | 0 | logfile |
✔ | 8UD9 | 42148 | 2024-03-25 | 2023-09-28 | 2.04 | 2.16 | 2.10 | 2.1 | 0.005 | 0.58 | 0.0 | 0.10 | 17.07 | 0.00 | 2.235 | 2.23 | 0.15 | 1.7 | 98.3 | 0.0 | 1.27 | 0.81 | 0.90 | 6.09 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 17.57 | 0.00 | 2.164 | 4.30 | 1.90 | 1.5 | 98.5 | 0.0 | 1.57 | 0.38 | 0.82 | 0.90 | 5.98 | 49955 | 6264 | 58 | 0 | 2 | 1120 | 0 | logfile |
✘ | 8CRS | 26957 | 2024-03-17 | 2022-05-11 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17888 | 1998 | 12 | 0 | 12 | 1692 | 0 | logfile |
✘ | 7F4V | 31455 | 2024-03-14 | 2021-06-21 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67641 | 6336 | 78 | 0 | 453 | 402 | 0 | logfile |
✔ | 7o6P | 12739 | 2024-03-11 | 2021-04-12 | 2.04 | 2.55 | — | 2.1 | 0.008 | 0.59 | 0.0 | 0.05 | 11.73 | 0.00 | 2.140 | 6.08 | 0.93 | 1.8 | 98.2 | 0.0 | -0.54 | 0.90 | 0.88 | 5.90 | 2.1 | 0.003 | 0.49 | 0.0 | 0.04 | 13.56 | 0.00 | 2.244 | 5.46 | 0.00 | 1.9 | 98.1 | 0.0 | 2.05 | 0.38 | 0.90 | 0.92 | 5.32 | 8276 | 1022 | 8 | 0 | 0 | 268 | 0 | logfile |
✔ | 8E49 | 27884 | 2024-03-12 | 2022-08-17 | 2.05 | 2.78 | 2.50 | 2.5 | 0.005 | 0.41 | 0.0 | 0.03 | 23.22 | 0.02 | 1.945 | 1.31 | 0.85 | 4.6 | 95.4 | 0.0 | 0.91 | 0.71 | 0.91 | 5.79 | 2.6 | 0.006 | 0.61 | 0.0 | 0.04 | 23.03 | 0.01 | 1.935 | 2.30 | 1.59 | 5.0 | 94.9 | 0.1 | 0.11 | 0.22 | 0.70 | 0.92 | 5.95 | 115871 | 1179 | 11 | 3016 | 1 | 0 | 41885 | logfile |
✔ | 8SDU | 40352 | 2024-03-10 | 2023-04-07 | 2.05 | 2.16 | 2.08 | 2.1 | 0.002 | 0.49 | 0.0 | 0.04 | 14.85 | 0.00 | 2.231 | 4.34 | 0.71 | 1.0 | 99.0 | 0.0 | 2.05 | 0.74 | 0.85 | 5.13 | 2.1 | 0.002 | 0.53 | 0.0 | 0.04 | 15.10 | 0.00 | 2.223 | 3.70 | 1.19 | 1.0 | 99.0 | 0.0 | 2.93 | 0.23 | 0.73 | 0.85 | 4.81 | 3942 | 500 | 2 | 0 | 0 | 70 | 0 | logfile |
✔ | 8GHE | 40042 | 2024-03-18 | 2023-03-09 | 2.05 | 2.65 | 2.15 | 2.5 | 0.006 | 0.73 | 0.0 | 0.05 | 12.12 | 0.01 | 2.229 | 4.10 | 0.04 | 1.7 | 98.3 | 0.0 | -0.85 | 0.83 | 0.91 | 5.79 | 2.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.38 | 0.00 | 2.068 | 9.23 | 0.61 | 1.4 | 98.6 | 0.0 | 1.73 | 0.45 | 0.82 | 0.91 | 5.43 | 22193 | 2648 | 12 | 0 | 5 | 830 | 0 | logfile |
✔ | 7JSX | 22462 | 2024-03-23 | 2020-08-16 | 2.06 | 2.05 | — | 2.1 | 0.022 | 1.67 | 2.0 | 0.11 | 11.97 | 0.01 | 2.201 | 6.77 | 1.26 | 3.9 | 96.1 | 0.0 | -1.03 | 0.74 | 0.76 | 5.10 | 2.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.32 | 0.00 | 2.155 | 7.76 | 0.77 | 2.3 | 97.7 | 0.0 | 1.01 | 0.65 | 0.82 | 0.90 | 6.34 | 38813 | 4832 | 40 | 0 | 0 | 1141 | 0 | logfile |
✘ | 7oY2 | 13108 | 2024-03-11 | 2021-06-23 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7166 | 858 | 7 | 0 | 7 | 24 | 0 | logfile |