Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7AUA	11926	2023-11-15	2020-11-02	2.93	3.12	—	3.1	0.008	0.64	0.0	0.05	12.69	0.00	1.809	1.92	0.00	3.7	96.3	0.0	-0.20	0.79	0.85	4.78	3.1	0.003	0.55	0.0	0.04	14.95	0.00	2.148	4.70	1.07	2.1	97.9	0.0	0.47	2.19	0.81	0.89	3.57	11300	1372	8	2	14	0	0	logfile
✔	7M1P	23617	2023-11-15	2021-03-14	3.6	3.93	—	3.9	0.003	0.61	0.0	0.04	13.10	0.00	2.226	8.07	0.00	9.4	90.4	0.2	-0.96	0.68	0.74	1.70	3.8	0.003	0.63	0.0	0.04	14.49	0.00	2.182	9.45	0.27	10.5	89.4	0.1	-1.10	0.32	0.69	0.76	1.15	13511	1938	5	0	13	1	0	logfile
✔	8HMV	34903	2023-11-14	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.49	0.0	0.04	15.50	0.00	2.170	4.71	0.45	2.6	97.4	0.0	0.81	0.37	0.66	0.87	3.21	8127	1022	5	0	0	0	0	logfile
✔	7L89	23226	2023-11-16	2020-12-31	3.8	4.01	3.20	3.8	0.023	1.76	1.0	0.15	9.53	0.02	2.051	1.96	0.00	1.6	98.4	0.0	0.80	0.82	0.85	3.71	3.8	0.003	0.58	0.0	0.04	13.21	0.00	2.217	5.45	0.20	2.2	97.8	0.0	0.60	1.19	0.82	0.87	3.49	15679	1677	51	0	311	0	0	logfile
✔	7NXF	12638	2023-11-13	2021-03-18	3.1	4.01	3.17	3.6	0.006	0.82	0.0	0.04	14.20	0.01	2.281	9.15	0.00	7.9	92.1	0.0	-0.71	0.60	0.80	1.58	3.7	0.005	0.67	0.0	0.04	15.64	0.00	1.905	9.22	0.44	7.3	92.7	0.0	0.44	1.96	0.59	0.86	1.35	6405	829	1	0	3	0	0	logfile
✔	7L86	23223	2023-11-16	2020-12-31	3.4	3.54	3.36	3.5	0.023	1.70	0.0	0.14	9.63	0.02	2.361	1.29	0.00	1.5	98.5	0.0	0.96	0.73	0.84	4.17	3.5	0.003	0.61	0.0	0.04	14.38	0.00	2.193	6.14	0.27	2.1	97.9	0.0	0.31	1.21	0.72	0.85	3.03	15802	1686	47	0	323	0	0	logfile
✔	6VKS	21228	2023-11-18	2020-01-22	3.02	3.41	—	3.4	0.006	0.89	0.0	0.05	15.05	0.01	1.946	8.72	0.00	3.2	96.8	0.0	-3.88	0.74	0.79	2.05	3.3	0.003	0.58	0.0	0.04	15.28	0.00	2.175	7.45	0.20	3.3	96.7	0.0	0.50	1.24	0.75	0.84	2.22	24034	3131	6	0	18	0	0	logfile
✔	7CN0	30412	2023-11-14	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.003	0.66	0.0	0.04	15.71	0.00	2.242	11.10	0.00	7.3	92.7	0.0	0.18	0.59	0.55	0.77	1.69	6602	884	5	0	2	0	0	logfile
✔	7L8D	23230	2023-11-16	2020-12-31	4.6	4.71	4.48	4.5	0.022	1.76	1.0	0.15	10.14	0.02	2.339	2.41	0.00	1.9	98.1	0.0	0.57	0.72	0.77	—	4.5	0.003	0.70	0.0	0.04	12.75	0.00	2.189	13.68	0.00	3.3	96.7	0.0	-0.53	1.41	0.73	0.80	—	15564	1662	49	0	309	0	0	logfile
✔	6U6i	20666	2023-11-21	2019-08-29	3.12	3.43	—	3.4	0.006	0.49	0.0	0.07	11.32	0.00	2.029	6.12	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.48	0.0	0.04	13.01	0.00	2.097	5.71	0.00	5.0	95.0	0.0	-0.04	0.51	0.81	0.83	4.17	21701	1496	9	0	11	0	10337	logfile
✔	6KoU	0740	2023-11-15	2019-08-13	2.43	3.57	—	3.0	0.004	0.67	1.0	0.13	11.88	0.00	2.006	4.07	0.00	3.0	97.0	0.0	-4.12	0.85	0.88	4.03	3.1	0.004	0.73	2.0	0.13	13.99	0.00	2.051	6.52	0.22	3.7	96.3	0.0	0.93	1.08	0.85	0.89	3.84	62209	3936	24	0	24	0	31225	logfile
✔	7L8C	23229	2023-11-16	2020-12-31	3.4	3.54	3.26	3.5	0.026	1.74	5.0	0.16	10.04	0.01	2.049	1.27	0.00	1.7	98.3	0.0	0.69	0.73	0.87	4.33	3.5	0.003	0.60	0.0	0.04	14.27	0.00	2.167	5.39	0.07	2.0	98.0	0.0	-0.01	1.22	0.71	0.86	3.12	15963	1691	56	0	331	0	0	logfile
✔	7WRZ	32738	2023-11-13	2022-01-28	3.26	3.44	—	3.4	0.004	0.62	0.0	0.04	13.70	0.01	2.201	6.90	0.00	5.9	94.1	0.0	-1.03	0.65	0.85	3.98	3.4	0.003	0.55	0.0	0.04	15.74	0.00	2.234	6.43	0.00	5.4	94.3	0.2	-0.80	1.14	0.62	0.85	3.37	3270	414	4	0	2	0	0	logfile
✔	7BoK	30131	2023-11-20	2020-03-19	3.7	3.80	3.93	3.7	0.009	0.92	0.0	0.05	14.40	0.01	2.036	8.66	0.00	4.6	95.4	0.0	-3.42	0.78	0.82	2.36	3.7	0.004	0.68	0.0	0.04	15.87	0.00	2.163	14.82	0.42	4.8	95.2	0.0	-0.37	1.27	0.79	0.84	2.14	29112	3708	24	0	12	0	0	logfile
✔	7T67	25711	2023-11-19	2021-12-13	3.0	4.53	3.13	3.0	0.004	0.76	0.0	0.05	13.07	0.01	2.074	5.55	0.00	2.8	97.2	0.0	-0.16	0.85	0.80	2.60	3.0	0.003	0.60	0.0	0.04	14.43	0.00	2.142	8.29	0.56	3.2	96.8	0.0	0.42	0.48	0.88	0.86	2.41	24753	3075	9	0	51	0	0	logfile
✔	6KQK	0753	2023-11-15	2019-08-18	2.17	3.14	—	2.8	0.018	1.17	12.0	0.06	14.73	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	2.0	0.12	15.49	0.00	1.782	9.69	0.69	4.1	95.9	0.0	0.23	0.79	0.82	0.86	4.20	63373	3936	24	0	48	0	31225	logfile
✔	7L8B	23228	2023-11-16	2020-12-31	3.7	3.83	3.64	3.8	0.022	1.72	2.0	0.15	10.15	0.02	1.218	2.26	0.00	2.3	97.7	0.0	1.11	0.70	0.83	3.74	3.8	0.004	0.66	0.0	0.04	15.08	0.00	2.137	7.10	0.20	3.7	96.3	0.0	-0.10	1.26	0.70	0.83	3.11	15704	1682	42	0	320	0	0	logfile
✔	7SGF	25109	2023-11-15	2021-10-05	4.41	4.60	4.16	4.4	0.022	2.04	0.0	0.15	9.26	0.01	2.354	1.42	0.00	1.9	98.1	0.0	-0.03	0.77	0.70	—	4.4	0.004	0.99	0.0	0.05	12.96	0.00	2.105	21.42	0.00	8.6	91.4	0.0	-2.15	1.05	0.79	0.74	—	12078	1641	42	0	87	0	0	logfile
✔	7W9i	32367	2023-11-13	2021-12-09	3.4	3.65	—	3.7	0.005	0.72	0.0	0.05	14.90	0.01	2.289	3.91	0.00	4.8	95.2	0.0	-5.48	0.68	0.80	2.34	3.7	0.002	0.59	0.0	0.04	16.48	0.00	2.238	7.11	0.14	1.9	98.1	0.0	-0.89	1.20	0.66	0.80	1.95	6412	791	2	0	0	0	0	logfile
✔	7RAM	24369	2023-11-15	2021-07-02	3.43	4.07	3.55	4.0	0.002	0.57	0.0	0.04	14.51	0.00	2.154	7.54	0.00	4.4	95.6	0.0	-0.56	0.72	0.76	2.24	4.0	0.004	0.63	0.0	0.04	16.20	0.00	2.201	9.22	0.22	5.8	94.2	0.0	-0.32	0.34	0.72	0.77	1.60	12006	1497	4	0	0	0	0	logfile

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