Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TF3	25860	2022-12-14	2022-01-06	2.25	2.94	—	2.8	0.004	0.79	0.0	0.06	12.88	0.01	2.287	3.10	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.003	0.55	0.0	0.04	14.82	0.00	2.181	6.18	1.27	1.9	98.1	0.0	0.89	1.85	0.79	0.84	3.49	21873	2703	24	0	56	0	0	logfile
✔	7Q2Z	13786	2022-12-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.54	0.0	0.03	19.96	0.00	2.121	3.52	0.12	2.9	97.0	0.1	2.02	1.23	0.70	0.86	1.90	8258	902	4	46	0	0	0	logfile
✔	7TDo	25837	2022-12-14	2022-01-02	3.15	4.00	—	3.7	0.004	0.57	0.0	0.04	14.51	0.00	2.284	4.72	0.00	4.1	95.9	0.0	-1.16	0.73	0.68	1.65	3.7	0.004	0.63	0.0	0.04	14.65	0.00	2.235	5.05	0.20	4.5	95.5	0.0	0.97	0.61	0.86	0.85	1.81	19572	2520	12	0	6	0	0	logfile
✔	7Q3E	13790	2022-12-15	2021-10-27	3.35	4.16	3.48	3.8	0.013	1.33	0.0	0.07	12.61	0.01	2.398	1.38	0.00	1.0	99.0	0.0	0.59	0.85	0.77	2.34	3.8	0.003	0.60	0.0	0.04	14.69	0.00	1.999	10.65	0.07	3.4	96.6	0.0	0.79	0.88	0.85	0.81	1.95	26622	1672	4	0	1	0	13368	logfile
✔	7SWD	25471	2022-12-13	2021-11-19	3.59	3.73	—	3.7	0.005	0.74	0.0	0.05	13.57	0.01	2.124	14.83	0.00	4.5	95.5	0.0	-0.91	0.73	0.79	2.33	3.7	0.003	0.70	0.0	0.04	16.11	0.00	2.192	14.28	0.73	5.2	94.8	0.0	-1.06	1.21	0.73	0.79	2.24	12833	1652	14	0	9	0	0	logfile
✔	7V9A	31813	2022-12-13	2021-08-24	3.94	3.46	—	3.4	0.002	0.58	0.0	0.03	14.82	0.00	2.260	6.90	0.00	5.2	94.8	0.0	-4.05	0.66	0.57	0.34	3.1	0.003	0.69	0.0	0.04	16.93	0.00	2.170	13.61	0.60	7.2	92.8	0.0	-2.16	1.88	0.72	0.68	1.09	16876	1723	10	146	0	0	0	logfile
✔	7N9Q	24259	2022-12-11	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.01	0.0	0.00	5.01	0.00	2.577	6.97	0.00	13.1	86.1	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7TCG	25811	2022-12-12	2021-12-23	3.8	3.89	3.84	3.9	0.004	1.15	0.0	0.04	15.68	0.00	2.138	5.65	0.00	7.9	92.1	0.0	-0.53	0.67	0.81	1.03	3.9	0.002	0.66	0.0	0.04	16.95	0.00	2.127	6.87	0.00	6.8	93.2	0.0	-0.21	0.94	0.67	0.82	0.91	8891	1123	4	0	1	0	0	logfile
✔	7NY5	12645	2022-12-15	2021-03-20	3.7	4.24	—	3.9	0.002	0.54	0.0	0.04	11.71	0.00	2.199	7.58	0.00	3.6	96.4	0.0	1.01	0.81	0.75	1.57	3.9	0.003	0.56	0.0	0.04	13.15	0.00	2.178	8.12	0.04	3.9	96.1	0.0	0.78	0.49	0.82	0.79	1.59	26466	3687	9	0	0	0	0	logfile
✔	7T3Q	25668	2022-12-13	2021-12-08	3.3	3.64	3.39	3.6	0.004	0.54	0.0	0.04	13.87	0.00	2.049	7.81	0.00	4.5	95.5	0.0	1.74	0.70	0.74	2.52	3.6	0.003	0.66	0.0	0.04	16.31	0.00	2.160	11.04	0.18	3.8	96.2	0.0	0.78	0.82	0.74	0.79	1.97	68124	8336	8	0	88	0	0	logfile
✔	7N95	24250	2022-12-11	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.003	0.89	0.0	0.00	3.97	0.00	2.552	3.52	0.00	14.4	85.4	0.2	-2.79	1.72	0.84	0.81	—	7299	2433	2	0	0	0	0	logfile
✔	7TPJ	26057	2022-12-11	2022-01-25	3.46	3.68	—	3.7	0.004	0.70	0.0	0.04	14.42	0.01	2.159	9.09	0.00	5.0	95.0	0.0	-0.01	0.57	0.69	1.76	3.7	0.003	0.62	0.0	0.04	16.04	0.00	2.254	9.09	0.60	4.8	95.2	0.0	0.77	1.43	0.58	0.72	1.71	4758	626	3	0	0	0	0	logfile
✔	7TT6	26112	2022-12-13	2022-01-31	4.3	4.50	—	4.4	0.005	0.91	0.0	0.05	10.73	0.01	2.190	3.14	0.00	1.4	98.6	0.0	0.38	0.64	0.69	—	4.4	0.004	0.62	0.0	0.04	12.21	0.00	1.922	9.41	0.00	3.5	96.5	0.0	-0.12	1.18	0.65	0.74	—	14047	915	5	0	0	0	6839	logfile
✔	7TCA	25807	2022-12-18	2021-12-23	3.85	5.12	4.09	4.0	0.002	0.60	0.0	0.05	13.58	0.00	2.132	9.81	0.00	7.0	92.5	0.4	-0.96	0.88	0.77	1.29	4.0	0.003	0.64	0.0	0.04	14.95	0.00	2.083	16.22	0.16	8.0	91.6	0.4	-1.04	0.55	0.89	0.82	1.31	33705	4244	24	0	56	0	0	logfile
✔	7V9L	31824	2022-12-11	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	4.19	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.59	0.0	0.04	15.79	0.00	2.135	10.88	1.38	2.2	97.8	0.0	0.96	0.50	0.77	0.79	2.85	8047	1019	5	0	0	0	0	logfile
✔	7S82	24889	2022-12-12	2021-09-17	3.5	3.79	3.54	3.8	0.005	0.72	0.0	0.04	13.22	0.00	2.097	17.81	0.00	7.7	92.3	0.0	-1.35	0.78	0.82	2.97	3.8	0.003	0.68	0.0	0.04	15.68	0.00	2.212	15.64	0.37	4.6	95.4	0.0	-1.16	1.57	0.78	0.82	2.07	4904	634	4	0	0	0	0	logfile
✔	7TT5	26111	2022-12-13	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.004	0.61	0.0	0.04	12.28	0.00	1.847	9.89	0.00	4.5	95.5	0.0	0.23	1.20	0.70	0.79	—	14255	928	5	0	0	0	6938	logfile
✔	7PBZ	13314	2022-12-13	2021-08-03	2.79	3.47	2.89	3.2	0.004	0.72	0.0	0.12	12.63	0.01	2.136	4.35	0.00	2.9	97.1	0.0	0.33	0.75	0.86	5.20	3.2	0.004	0.61	0.0	0.04	14.97	0.00	2.148	6.58	1.40	2.3	97.7	0.0	0.90	0.44	0.75	0.86	4.75	14822	1773	17	0	37	0	0	logfile
✔	7W0A	32236	2022-12-15	2021-11-18	3.12	3.32	—	3.3	0.004	0.53	0.0	0.04	13.55	0.00	2.186	7.11	0.00	3.0	97.0	0.0	0.62	0.74	0.81	2.98	3.3	0.003	0.50	0.0	0.04	14.83	0.00	2.170	6.50	0.07	2.8	97.2	0.0	0.89	0.46	0.78	0.86	2.52	26898	2988	8	126	0	0	0	logfile
✔	7SWP	25478	2022-12-11	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	3.9	0.004	0.90	0.0	0.05	16.00	0.01	2.077	27.82	1.37	6.7	93.3	0.0	-1.39	2.20	0.52	0.75	1.43	3372	436	3	0	0	0	0	logfile

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