Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PZ9	20528	2023-04-20	2019-07-31	3.65	3.90	—	3.9	0.009	1.21	0.0	0.06	12.29	0.01	2.205	3.30	0.00	6.9	93.1	0.0	-3.88	0.65	0.67	2.19	3.9	0.003	0.69	0.0	0.04	14.46	0.00	2.142	7.68	0.79	5.2	94.8	0.0	-0.13	1.56	0.68	0.72	0.85	7773	1196	3	0	2	0	0	logfile
✔	7SoC	25266	2023-04-20	2021-10-29	3.3	3.48	3.25	3.5	0.011	1.22	0.0	0.07	10.61	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	3.5	0.005	0.60	0.0	0.04	13.40	0.00	2.171	4.01	0.28	2.6	97.4	0.0	-0.26	0.51	0.69	0.90	3.92	3448	433	5	0	7	0	0	logfile
✔	7YAD	33709	2023-04-20	2022-06-27	2.66	2.45	2.92	2.2	0.003	0.55	0.0	0.04	12.58	0.00	2.165	5.84	0.00	4.5	95.3	0.1	-1.22	0.71	0.77	3.55	2.2	0.003	0.60	0.0	0.04	15.11	0.00	2.169	7.20	1.12	5.4	94.5	0.1	-1.14	2.15	0.73	0.80	2.89	6728	848	8	0	6	0	0	logfile
✔	7SoF	25269	2023-04-20	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.31	1.0	0.08	8.49	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.003	0.63	0.0	0.04	13.52	0.00	2.160	5.47	0.88	2.7	97.3	0.0	0.07	1.37	0.68	0.82	3.79	3735	488	5	0	9	0	0	logfile
✔	7ZGY	14715	2023-04-26	2022-04-04	2.54	3.09	5.67	3.1	0.025	0.90	0.0	0.27	14.44	0.01	1.605	24.14	0.00	10.2	89.5	0.2	-1.88	0.69	0.83	4.57	3.1	0.004	0.88	0.0	0.05	15.60	0.00	1.899	12.83	0.60	10.2	89.7	0.2	-1.80	0.23	0.68	0.87	4.49	21861	2847	6	0	21	0	0	logfile
✔	7XCK	33123	2023-04-21	2022-03-24	2.5	2.98	2.85	3.0	0.004	0.71	0.0	0.05	12.66	0.01	2.179	4.89	0.00	4.6	95.3	0.1	-0.89	0.61	0.81	4.36	3.0	0.003	0.68	0.0	0.05	15.46	0.01	2.196	6.00	2.63	5.9	94.1	0.0	-0.82	1.20	0.57	0.82	4.02	5488	704	4	0	3	0	0	logfile
✔	7WS6	32748	2023-04-20	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.78	0.0	0.04	16.21	0.00	2.246	14.14	1.03	4.9	95.1	0.0	-1.31	0.66	0.67	0.74	2.39	3531	451	3	0	0	0	0	logfile
✔	7LY4	23587	2023-04-22	2021-03-05	3.8	4.17	3.83	3.9	0.019	1.73	1.0	0.10	11.37	0.01	2.293	1.48	0.00	1.8	97.8	0.3	0.65	0.82	0.72	1.64	3.9	0.003	0.67	0.0	0.04	14.60	0.00	2.172	7.66	0.08	3.5	96.3	0.2	0.68	0.90	0.84	0.78	1.37	11934	1474	5	0	2	0	0	logfile
✔	7NS6	12561	2023-04-22	2021-03-05	3.18	4.09	—	3.2	0.004	0.85	25.0	0.06	13.20	0.00	2.006	12.56	0.00	2.3	97.6	0.1	0.71	0.87	0.81	1.73	3.2	0.002	0.58	0.0	0.04	14.34	0.00	2.115	10.89	0.20	3.2	96.8	0.0	0.28	1.52	0.89	0.86	2.02	55899	7109	20	0	52	0	0	logfile
✔	7NKi	12440	2023-04-28	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	13.49	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.003	0.69	0.0	0.04	14.03	0.00	1.901	21.72	0.00	6.5	93.5	0.0	-1.27	2.38	0.80	0.65	—	28775	1794	6	23	0	0	13868	logfile
✔	7WP1	32666	2023-04-20	2022-01-22	3.77	3.91	—	3.9	0.006	1.17	0.0	0.07	14.56	0.02	2.338	3.88	0.00	12.2	87.5	0.2	-5.40	0.64	0.78	2.71	3.9	0.004	0.80	0.0	0.05	16.26	0.00	2.064	13.18	1.13	11.8	88.2	0.0	-3.82	0.96	0.63	0.78	2.11	3305	423	4	0	2	0	0	logfile
✔	7WSA	32752	2023-04-20	2022-01-28	3.0	3.42	—	3.4	0.004	0.78	0.0	0.05	14.04	0.01	2.185	11.53	0.00	2.9	97.1	0.0	-1.59	0.76	0.71	2.04	3.4	0.003	0.75	0.0	0.04	15.95	0.00	2.136	13.24	1.57	3.4	96.6	0.0	0.46	0.73	0.78	0.76	1.75	6567	796	4	0	7	0	0	logfile
✔	6X6K	22076	2023-04-21	2020-05-28	3.1	3.22	—	3.2	0.011	1.23	2.0	0.07	13.77	0.01	2.210	8.21	0.00	5.5	94.5	0.0	-1.94	0.69	0.84	2.88	3.2	0.004	0.69	0.0	0.05	16.58	0.00	2.126	16.02	0.31	5.4	94.6	0.0	-0.16	0.63	0.70	0.85	2.39	60970	7602	42	0	0	0	0	logfile
✔	7WWK	32868	2023-04-20	2022-02-13	3.4	3.74	—	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.206	7.38	0.00	4.1	95.7	0.2	-0.93	0.74	0.87	3.33	3.6	0.003	0.58	0.0	0.04	14.84	0.00	2.179	7.53	0.28	5.2	94.8	0.0	-0.78	0.38	0.75	0.90	2.86	6620	845	6	0	0	0	0	logfile
✔	6KLD	0707	2023-04-22	2019-07-30	3.58	3.66	—	3.6	0.003	0.63	0.0	0.04	14.00	0.00	2.199	8.12	0.00	9.2	90.7	0.1	-0.76	0.74	0.82	2.05	3.6	0.003	0.65	0.0	0.04	15.93	0.00	2.139	8.24	0.28	8.8	91.2	0.1	-0.02	0.43	0.72	0.81	1.42	12794	1617	1	0	2	0	0	logfile
✔	7TT6	26112	2023-04-23	2022-01-31	4.3	4.50	—	4.4	0.005	0.91	0.0	0.05	10.73	0.01	2.190	3.14	0.00	1.4	98.6	0.0	0.38	0.64	0.69	—	4.4	0.002	0.57	0.0	0.04	12.24	0.00	1.969	7.27	0.00	2.4	97.6	0.0	0.18	1.18	0.66	0.75	—	14047	915	5	0	0	0	6839	logfile
✔	6YY0	11001	2023-04-21	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.68	0.0	0.04	15.27	0.00	1.847	8.18	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.003	0.53	0.0	0.04	16.05	0.00	1.773	6.14	0.16	4.5	95.5	0.0	0.36	0.33	0.73	0.86	2.63	61162	3926	25	0	11	17	30826	logfile
✔	6LN6	0925	2023-04-20	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.64	0.0	0.04	11.98	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.002	0.51	0.0	0.04	15.73	0.00	2.055	7.86	1.74	1.4	98.6	0.0	0.61	1.33	0.65	0.83	3.33	7836	1010	1	0	4	0	0	logfile
✔	7W7V	32349	2023-04-20	2021-12-06	3.0	2.82	3.01	3.0	0.003	0.56	0.0	0.04	13.32	0.00	2.010	8.84	0.00	2.5	97.5	0.0	0.63	0.59	0.73	1.18	3.0	0.003	0.55	0.0	0.04	16.73	0.00	1.939	8.39	2.55	3.4	96.6	0.0	-0.02	0.58	0.63	0.77	1.59	7823	1012	1	0	2	0	0	logfile
✔	7B03	11955	2023-04-20	2020-11-18	2.93	2.97	—	2.9	0.005	0.90	0.0	0.04	13.22	0.00	2.190	7.91	0.00	1.9	98.1	0.0	1.34	0.69	0.81	1.85	2.9	0.004	0.57	0.0	0.04	15.54	0.00	2.163	7.50	2.49	1.7	98.3	0.0	1.44	0.39	0.68	0.84	1.62	8670	1085	10	0	5	0	0	logfile

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