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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6EDU | 9038 | 2024-03-20 | 2018-08-11 | 4.06 | 4.23 | — | 4.2 | 0.008 | 1.37 | 20.0 | 0.08 | 14.78 | 0.02 | 1.242 | 10.95 | 2.62 | 12.1 | 87.1 | 0.8 | -4.56 | 0.72 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26271 | 3261 | 54 | 0 | 123 | 0 | 0 | logfile |
✘ | 7XYA | 33515 | 2024-03-20 | 2022-06-01 | 3.3 | 3.39 | 3.24 | 3.2 | 0.004 | 0.68 | 1.0 | 0.04 | 19.12 | 0.00 | 1.962 | 11.59 | 1.00 | 4.0 | 95.9 | 0.0 | -0.19 | 0.81 | 0.84 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3479 | 11 | 126 | 1 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2024-03-19 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.73 | 0.00 | 1.956 | 17.39 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |
✘ | 7Y75 | 33652 | 2024-03-19 | 2022-06-21 | 3.1 | 3.35 | 3.04 | 3.3 | 0.008 | 0.80 | 0.0 | 0.05 | 16.44 | 0.00 | 1.927 | 10.11 | 4.43 | 7.1 | 92.7 | 0.2 | -2.95 | 0.75 | 0.86 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25186 | 3042 | 26 | 0 | 46 | 0 | 0 | logfile |
✘ | 6oo7 | 20148 | 2024-03-17 | 2019-04-22 | 3.8 | 4.25 | 3.77 | 4.0 | 0.013 | 1.08 | 0.0 | 0.06 | 10.20 | 0.01 | 2.273 | 4.27 | 0.00 | 3.5 | 96.5 | 0.0 | -1.41 | 0.75 | 0.78 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16860 | 2394 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7AHE | 11784 | 2024-03-14 | 2020-09-24 | 4.1 | 4.22 | 4.11 | 4.1 | 0.007 | 1.01 | 0.0 | 0.08 | 13.74 | 0.00 | 2.205 | 16.70 | 0.45 | 9.6 | 90.4 | 0.0 | -5.40 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10060 | 1308 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6U48 | 20638 | 2024-03-19 | 2019-08-23 | 2.87 | 2.54 | 2.82 | 2.8 | 0.007 | 0.93 | 3.0 | 0.05 | 22.63 | 0.02 | 1.331 | 3.48 | 0.74 | 6.2 | 93.3 | 0.4 | -3.65 | 0.49 | 0.75 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90950 | 3378 | 32 | 3016 | 0 | 0 | 0 | logfile |
✘ | 6VAD | 21137 | 2024-03-16 | 2019-12-17 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37613 | 2321 | 2 | 0 | 0 | 0 | 19096 | logfile |
✘ | 7PCQ | 13325 | 2024-03-11 | 2021-08-03 | 3.62 | 4.96 | 3.71 | 4.1 | 0.013 | 1.55 | 0.0 | 0.10 | 13.62 | 0.01 | 2.557 | 1.30 | 0.78 | 2.8 | 97.2 | 0.0 | 1.72 | 0.91 | 0.78 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7350 | 911 | 9 | 0 | 4 | 0 | 0 | logfile |
✘ | 7CZW | 30519 | 2024-03-21 | 2020-09-09 | 2.8 | 2.87 | — | 2.8 | 0.011 | 1.00 | 0.0 | 0.07 | 17.56 | 0.01 | 1.981 | 18.20 | 11.42 | 10.0 | 88.8 | 1.2 | -3.75 | 0.66 | 0.74 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31004 | 3880 | 31 | 0 | 70 | 0 | 0 | logfile |
✘ | 8FHQ | 29099 | 2024-03-11 | 2022-12-14 | 2.81 | 3.05 | 2.83 | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.303 | 4.02 | 0.65 | 3.5 | 96.5 | 0.0 | -1.14 | 0.62 | 0.86 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7306 | 950 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7YDQ | 33756 | 2024-03-10 | 2022-07-04 | 4.04 | 4.32 | 4.02 | 4.4 | 0.006 | 0.83 | 0.0 | 0.04 | 17.50 | 0.01 | 2.262 | 10.34 | 0.57 | 3.2 | 96.8 | 0.0 | 1.21 | 0.46 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4778 | 598 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7CH8 | 30371 | 2024-03-17 | 2020-07-05 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16213 | 2122 | 17 | 0 | 12 | 0 | 0 | logfile |
✘ | 8D4T | 27196 | 2024-03-20 | 2022-06-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27974 | 1738 | 17 | 0 | 12 | 0 | 13710 | logfile |
✘ | 6oo4 | 20145 | 2024-03-17 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 10.41 | 0.01 | 1.858 | 2.96 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2024-03-24 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7PQ5 | 13587 | 2024-03-11 | 2021-09-16 | 3.17 | 3.58 | 3.09 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 15.55 | 0.01 | 2.255 | 3.50 | 2.82 | 4.5 | 95.3 | 0.2 | -0.13 | 0.85 | 0.87 | 5.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8512 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WLD | 32582 | 2024-03-18 | 2022-01-13 | 2.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19732 | 2393 | 11 | 0 | 29 | 0 | 0 | logfile |
✘ | 6CNN | 7538 | 2024-03-16 | 2018-03-08 | 3.5 | 3.63 | — | 3.6 | 0.008 | 1.07 | 0.0 | 0.05 | 12.90 | 0.01 | 2.016 | 1.24 | 0.00 | 4.0 | 96.0 | 0.0 | -4.29 | 0.66 | 0.83 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15740 | 2024 | 16 | 0 | 28 | 0 | 0 | logfile |
✘ | 6KAF | 9957 | 2024-03-21 | 2019-06-22 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |