Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WSE	32755	2023-04-22	2022-01-29	2.93	3.45	—	3.4	0.002	0.44	0.0	0.04	10.17	0.00	2.193	4.86	1.01	1.8	98.2	0.0	-0.67	0.69	0.79	3.50	3.4	0.003	0.63	0.0	0.04	15.09	0.00	2.026	7.56	1.73	2.7	97.3	0.0	0.62	1.41	0.60	0.79	2.12	6431	791	3	0	1	0	0	logfile
✔	6WB2	21585	2023-04-20	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.206	8.83	0.00	3.3	96.7	0.0	-0.40	0.64	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	7S3i	24825	2023-04-20	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.50	0.0	0.04	16.13	0.00	2.094	5.73	1.15	1.8	98.2	0.0	1.82	0.93	0.76	0.88	3.50	8094	1023	5	0	0	0	0	logfile
✔	6J30	9773	2023-04-19	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	7UY6	26865	2023-04-24	2022-05-06	2.9	2.49	2.94	3.0	0.002	0.44	0.0	0.04	15.88	0.00	2.215	4.00	0.06	1.7	98.3	0.0	1.19	0.70	0.81	3.09	2.9	0.003	0.52	0.0	0.04	17.90	0.00	2.205	5.26	1.63	2.2	97.8	0.1	1.20	1.19	0.70	0.83	2.85	18746	1847	9	170	1	0	0	logfile
✔	7o73	12744	2023-04-27	2021-04-12	3.4	3.36	3.51	3.3	0.002	0.44	2.0	0.04	14.41	0.00	1.888	4.22	0.01	2.2	97.8	0.0	1.66	0.79	0.78	1.84	3.3	0.005	0.72	0.0	0.04	16.75	0.00	1.931	12.06	0.44	3.5	96.5	0.0	0.24	1.31	0.80	0.82	1.76	73768	8880	43	130	22	0	0	logfile
✔	7EoR	31228	2023-04-26	2021-04-22	4.0	4.40	—	4.1	0.002	0.44	0.0	0.04	8.80	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.004	0.74	0.0	0.05	13.25	0.00	2.132	16.42	0.23	5.9	94.1	0.0	-0.94	2.23	0.89	0.82	—	24204	3030	8	0	16	0	0	logfile
✘	7WSF	32756	2023-04-23	2022-01-29	2.87	3.08	—	3.1	0.003	0.44	0.0	0.04	11.23	0.00	2.016	6.14	3.87	2.7	97.3	0.0	-0.12	0.72	0.81	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7170	879	3	0	1	0	0	logfile
✔	7S0G	24790	2023-04-23	2021-08-30	3.86	3.93	—	3.9	0.003	0.44	0.0	0.04	12.41	0.00	1.898	3.75	0.00	3.3	96.7	0.0	-1.90	0.49	0.72	2.15	3.9	0.003	0.54	0.0	0.04	15.92	0.00	1.940	10.17	0.40	4.4	95.6	0.0	0.02	2.30	0.48	0.72	2.04	13846	893	5	0	1	0	6854	logfile
✔	7SZi	25567	2023-04-20	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.54	0.0	0.04	14.28	0.00	2.186	3.74	0.96	3.8	96.1	0.1	0.05	0.24	0.72	0.88	5.17	8089	1038	4	0	0	0	0	logfile
✔	7Z4K	14500	2023-04-23	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	14.82	0.00	2.200	9.44	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	3.9	0.004	0.69	0.0	0.04	16.91	0.00	2.146	21.08	0.25	4.4	95.6	0.0	0.02	1.90	0.88	0.80	0.62	14005	1360	4	138	0	0	0	logfile
✔	8A03	15046	2023-04-20	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.002	0.50	0.0	0.05	16.53	0.00	2.187	4.93	0.32	3.0	97.0	0.0	-0.16	0.40	0.50	0.86	2.60	5511	717	3	0	0	0	0	logfile
✘	8A01	15044	2023-04-20	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✔	7S0F	24789	2023-04-23	2021-08-30	2.96	3.06	—	3.0	0.003	0.45	0.0	0.04	13.98	0.00	1.994	3.24	1.74	2.6	97.3	0.1	-1.72	0.49	0.74	2.57	3.0	0.004	0.55	0.0	0.04	16.82	0.00	2.134	5.83	3.21	3.5	96.4	0.1	0.82	1.33	0.51	0.79	2.45	13885	892	5	0	1	0	6887	logfile
✔	7WVV	32859	2023-04-20	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.003	0.55	0.0	0.04	15.35	0.00	2.136	9.20	1.89	2.9	97.1	0.0	0.43	0.45	0.62	0.79	2.80	7020	911	5	0	0	0	0	logfile
✔	7NKD	12438	2023-04-21	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.003	0.48	0.0	0.04	15.43	0.00	2.128	7.12	0.00	1.5	98.5	0.0	3.15	0.91	0.85	0.83	2.19	9555	643	8	0	0	0	4768	logfile
✔	7EPD	31238	2023-04-24	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.004	0.64	0.0	0.04	14.15	0.00	2.224	13.87	0.45	5.3	94.7	0.0	0.04	1.20	0.75	0.74	1.44	10710	1569	2	0	0	0	0	logfile
✔	8EW3	28641	2023-04-22	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.09	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.57	0.0	0.04	13.31	0.00	1.077	6.08	0.56	1.8	98.2	0.0	1.38	1.18	0.75	0.89	3.39	11902	1540	9	0	5	0	0	logfile
✔	7TD0	25819	2023-04-22	2021-12-30	2.83	2.95	—	2.9	0.003	0.45	0.0	0.04	12.54	0.00	2.187	3.45	0.72	3.3	96.7	0.0	-1.88	0.53	0.72	3.80	2.9	0.003	0.52	0.0	0.04	15.63	0.00	2.034	7.34	3.75	3.6	96.4	0.0	0.75	0.54	0.54	0.75	3.72	13308	903	5	0	1	0	6471	logfile
✔	7NVW	12615	2023-04-26	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.45	0.00	1.971	6.64	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.003	0.70	0.0	0.04	15.77	0.00	2.146	15.97	0.00	4.7	95.2	0.0	-0.42	1.05	0.73	0.68	—	23647	2814	17	42	35	0	0	logfile

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