Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WCB	21605	2023-11-15	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.50	0.0	0.04	15.55	0.00	2.072	3.71	0.16	1.7	98.3	0.0	3.40	1.29	0.54	0.79	2.46	11647	734	6	0	7	40	5904	logfile
✔	7oJN	12956	2023-11-16	2021-05-16	2.92	3.27	2.89	2.9	0.004	0.41	0.0	0.04	9.24	0.00	1.859	3.51	0.93	4.7	95.2	0.1	0.93	0.88	0.83	3.05	3.0	0.003	0.48	0.0	0.04	12.79	0.00	2.079	5.38	1.20	4.9	95.1	0.0	0.81	2.62	0.91	0.90	2.99	16991	2010	6	39	7	0	0	logfile
✔	7oDT	12847	2023-11-14	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	11.02	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.004	0.58	0.0	0.04	14.59	0.00	1.854	10.60	0.26	2.7	97.3	0.0	0.79	1.26	0.78	0.83	2.50	110473	9585	71	1526	110	0	0	logfile
✔	7PiM	13442	2023-11-15	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7ULW	26595	2023-11-17	2022-04-05	3.1	3.61	3.28	3.5	0.002	0.41	0.0	0.04	13.47	0.00	2.235	2.87	0.00	1.3	98.7	0.0	2.53	0.53	0.83	2.45	3.4	0.003	0.58	0.0	0.04	16.61	0.00	2.103	7.93	0.30	2.4	97.6	0.0	1.71	0.77	0.54	0.85	2.68	18766	2400	6	0	0	0	0	logfile
✔	6QXF	4668	2023-11-21	2019-03-07	3.6	4.31	—	3.6	0.002	0.42	0.0	0.04	11.08	0.00	2.203	7.01	0.73	2.2	97.7	0.1	-1.19	0.90	0.86	1.38	3.6	0.003	0.63	0.0	0.04	14.05	0.00	2.106	11.03	0.10	2.3	97.6	0.1	1.79	2.77	0.89	0.86	1.53	34693	4088	30	50	8	0	0	logfile
✔	7T8C	25744	2023-11-20	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	8BB1	15953	2023-11-16	2022-10-12	2.8	3.65	2.86	3.3	0.003	0.42	0.0	0.04	10.05	0.01	2.226	3.53	0.71	2.0	98.0	0.0	0.54	0.89	0.88	4.07	3.3	0.004	0.66	0.0	0.04	12.79	0.00	2.165	8.31	1.47	2.1	97.9	0.0	0.66	2.28	0.88	0.86	3.72	16168	2100	20	0	4	24	0	logfile
✔	7BL6	12219	2023-11-21	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	10.95	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.003	0.62	0.0	0.03	16.56	0.00	1.977	30.24	0.27	7.0	92.9	0.1	-1.35	3.11	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	8GS2	34218	2023-11-16	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.48	0.0	0.04	15.15	0.00	2.178	6.89	1.56	1.7	98.3	0.0	1.44	1.33	0.73	0.89	4.10	16935	1916	7	64	4	0	0	logfile
✔	8E47	27882	2023-11-15	2022-08-17	2.32	2.95	2.51	2.8	0.005	0.42	0.0	0.09	12.78	0.02	1.901	1.08	0.96	3.9	96.1	0.0	0.60	0.74	0.91	4.96	2.8	0.005	0.65	0.0	0.05	14.01	0.01	1.885	2.02	1.59	5.4	94.5	0.1	-0.68	0.37	0.70	0.89	5.42	115917	1179	11	3016	1	0	41886	logfile
✔	7EU8	31309	2023-11-17	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	8.09	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.66	0.0	0.06	8.70	0.00	2.123	8.02	0.00	4.7	95.1	0.2	-0.32	1.42	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✘	5GW4	9540	2023-11-15	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7ZXP	15013	2023-11-17	2022-05-22	2.39	2.72	2.35	2.5	0.002	0.42	0.0	0.04	14.73	0.00	2.332	3.46	1.17	1.1	98.9	0.0	4.20	0.72	0.87	3.52	2.6	0.003	0.42	0.0	0.04	15.58	0.00	2.308	3.30	2.44	1.1	98.9	0.0	4.85	0.89	0.64	0.90	3.39	18420	2292	12	0	0	0	0	logfile
✔	8HK3	34843	2023-11-14	2022-11-24	3.2	2.28	3.11	2.1	0.002	0.42	0.0	0.04	6.31	0.00	2.069	3.40	0.11	0.9	99.1	0.0	-1.02	0.74	0.73	3.34	2.2	0.003	0.57	0.0	0.04	13.67	0.00	2.179	7.32	0.85	2.9	97.1	0.0	0.98	1.21	0.77	0.79	3.00	8746	1135	5	0	0	0	0	logfile
✔	8E3M	27868	2023-11-15	2022-08-17	2.25	2.92	2.58	2.7	0.005	0.42	0.0	0.07	13.14	0.02	1.973	2.01	1.27	4.0	96.0	0.0	0.83	0.71	0.91	5.18	2.7	0.005	0.62	0.0	0.04	14.24	0.01	1.964	3.51	1.27	5.1	94.8	0.2	0.20	0.25	0.69	0.90	5.59	115715	1179	11	3016	1	0	41815	logfile
✔	8E49	27884	2023-11-15	2022-08-17	2.05	2.78	2.50	2.5	0.005	0.42	0.0	0.03	12.76	0.02	1.945	1.31	0.85	4.6	95.4	0.0	0.91	0.71	0.91	5.79	2.6	0.005	0.60	0.0	0.04	13.62	0.01	1.890	2.36	1.17	5.2	94.8	0.1	0.08	0.21	0.70	0.92	5.87	115871	1179	11	3016	1	0	41885	logfile
✔	7JLX	22383	2023-11-13	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7EoS	31229	2023-11-18	2021-04-22	3.9	4.43	—	3.9	0.002	0.42	0.0	0.04	8.87	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.003	0.68	0.0	0.04	12.42	0.00	2.139	12.94	0.34	6.1	93.9	0.1	-0.43	1.30	0.90	0.83	1.30	24600	3106	8	0	18	0	0	logfile
✔	8C8Z	16496	2023-11-16	2023-01-21	3.12	3.41	3.24	3.1	0.002	0.42	0.0	0.03	13.11	0.00	1.882	6.67	0.05	7.0	93.0	0.1	0.01	0.77	0.79	2.28	3.1	0.005	0.62	0.0	0.03	14.55	0.00	1.980	12.33	0.53	8.8	91.1	0.1	-1.24	1.83	0.80	0.85	2.14	67990	2311	24	2324	0	0	0	logfile

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