Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NTS	0510	2023-04-21	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.23	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.01	0.00	2.074	8.23	0.00	2.2	97.8	0.0	0.88	2.31	0.92	0.85	1.06	9956	1240	5	0	3	0	0	logfile
✔	8EUG	24412	2023-04-25	2022-10-18	2.8	2.82	—	2.8	0.005	0.53	0.0	0.03	15.48	0.00	2.091	7.67	0.47	3.5	96.2	0.3	-0.23	0.81	0.81	3.22	2.8	0.004	0.59	0.0	0.04	15.74	0.00	2.056	9.21	1.87	4.0	95.8	0.2	0.13	0.30	0.81	0.82	3.01	123162	7108	47	3138	1	0	0	logfile
✔	6X35	22018	2023-04-21	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	7oDT	12847	2023-04-21	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	11.01	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.003	0.58	0.0	0.04	14.67	0.00	1.891	10.64	0.27	2.6	97.4	0.0	0.69	0.71	0.78	0.83	2.53	110473	9585	71	1526	110	0	0	logfile
✔	8A3B	15110	2023-04-23	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.004	0.59	0.0	0.04	16.26	0.00	2.134	6.73	0.49	1.6	98.4	0.0	2.23	0.49	0.74	0.77	2.04	14448	1792	7	0	0	0	0	logfile
✔	7DBP	30161	2023-04-22	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.005	0.66	0.0	0.03	30.47	0.00	2.147	27.18	0.00	3.7	96.3	0.0	0.77	2.53	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	7XQG	33395	2023-04-21	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	11.19	0.00	2.268	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.78	0.0	0.04	15.05	0.00	2.291	8.32	0.19	3.6	96.4	0.0	2.37	0.77	0.80	0.85	1.40	10206	1206	12	0	12	0	0	logfile
✔	6X33	22016	2023-04-22	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	7XSM	33427	2023-04-22	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	6PCT	20307	2023-04-27	2019-06-18	2.8	3.01	—	2.9	0.006	0.43	2.0	0.03	12.76	0.03	1.891	2.96	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.005	0.70	0.0	0.04	14.72	0.01	2.058	8.14	3.81	6.8	93.1	0.1	-1.02	0.41	0.68	0.88	4.35	72198	964	8	3015	1	0	0	logfile
✔	8E55	27903	2023-04-22	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	6T2V	10370	2023-04-26	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.84	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.004	0.72	0.0	0.04	15.71	0.00	2.160	15.45	0.17	4.1	95.9	0.0	0.33	2.38	0.90	0.80	0.62	23826	2847	4	54	0	0	0	logfile
✔	7X58	33011	2023-04-21	2022-03-04	3.93	4.15	—	3.9	0.003	0.56	0.0	0.03	27.31	0.00	2.221	7.16	0.00	0.9	99.1	0.0	0.68	0.86	0.80	1.58	3.9	0.004	0.72	0.0	0.04	29.78	0.00	2.201	14.33	1.19	2.4	97.6	0.0	2.26	1.37	0.88	0.83	0.76	9775	596	10	242	0	0	0	logfile
✔	7YoZ	33991	2023-04-21	2022-08-02	4.3	4.57	4.38	4.3	0.003	0.55	0.0	0.03	27.62	0.00	2.269	6.78	0.00	1.4	98.6	0.0	0.64	0.85	0.72	—	4.3	0.004	0.74	0.0	0.04	29.71	0.01	2.196	19.72	0.00	1.9	98.1	0.0	0.22	1.82	0.89	0.83	—	9752	594	10	242	0	0	0	logfile
✔	8G8G	29850	2023-04-23	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	7P1J	13162	2023-04-20	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.87	0.0	0.04	14.68	0.00	2.227	16.91	0.72	6.3	93.7	0.0	0.73	1.43	0.66	0.74	0.77	6502	868	2	0	0	0	0	logfile
✔	7JGG	22326	2023-04-20	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.81	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile
✔	7A8P	11679	2023-04-20	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.53	0.0	0.03	16.10	0.00	2.165	2.86	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.5	0.004	0.60	0.0	0.04	16.93	0.00	2.005	9.28	0.13	2.0	98.0	0.0	2.26	0.49	0.74	0.80	2.04	7305	911	1	0	1	0	0	logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7EZ0	31385	2023-04-20	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.005	0.67	0.0	0.04	15.53	0.00	1.862	8.10	0.00	0.0	0.0	0.0	—	1.91	0.76	0.86	—	8306	0	1	387	27	0	0	logfile

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