Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LY6	4118	2023-11-13	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	8GKA	40181	2023-11-18	2023-03-17	2.55	2.76	2.62	2.8	0.001	0.38	0.0	0.03	12.09	0.00	2.291	7.21	0.54	3.2	96.8	0.0	0.61	0.63	0.78	3.74	2.8	0.003	0.59	0.0	0.04	17.28	0.00	2.204	9.44	1.81	4.0	96.0	0.0	0.74	1.61	0.64	0.82	3.41	21812	2500	8	0	34	0	0	logfile
✔	7X58	33011	2023-11-14	2022-03-04	3.93	4.15	—	3.9	0.003	0.56	0.0	0.03	27.31	0.00	2.221	7.16	0.00	0.9	99.1	0.0	0.68	0.86	0.80	1.58	3.9	0.005	0.74	0.0	0.04	29.86	0.00	2.200	15.92	0.99	3.1	96.9	0.0	2.24	1.39	0.88	0.84	0.66	9775	596	10	242	0	0	0	logfile
✔	8SZA	40905	2023-11-13	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	14.83	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.61	0.0	0.04	15.68	0.00	2.280	8.99	2.16	0.7	99.3	0.0	2.68	0.49	0.50	0.78	1.33	4800	606	11	0	6	0	0	logfile
✔	7Y5W	33627	2023-11-14	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.68	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.005	0.89	0.0	0.04	28.98	0.01	2.069	23.02	0.40	2.0	98.0	0.0	0.85	0.95	0.90	0.85	0.98	8811	579	10	202	0	0	0	logfile
✔	8G3K	29700	2023-11-13	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	17.12	0.00	2.333	3.72	0.41	0.7	99.3	0.0	4.78	1.17	0.47	0.83	4.98	2244	285	2	0	0	0	0	logfile
✔	8SVF	40789	2023-11-16	2023-05-16	3.2	4.13	3.32	3.5	0.003	0.53	0.0	0.03	25.01	0.00	2.220	6.36	1.28	1.6	98.4	0.0	2.82	0.85	0.83	1.74	3.5	0.003	0.59	0.0	0.03	26.30	0.00	2.221	8.84	0.21	2.7	97.3	0.0	2.51	0.67	0.86	0.85	1.24	15254	1189	13	295	0	0	0	logfile
✔	7YoZ	33991	2023-11-14	2022-08-02	4.3	4.57	4.38	4.3	0.003	0.55	0.0	0.03	27.62	0.00	2.269	6.78	0.00	1.4	98.6	0.0	0.64	0.85	0.72	—	4.3	0.004	0.74	0.0	0.04	29.66	0.01	2.190	19.49	0.00	1.6	98.4	0.0	0.47	1.80	0.90	0.83	—	9752	594	10	242	0	0	0	logfile
✔	7RX5	24725	2023-11-14	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	8CQR	16799	2023-11-14	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.003	0.59	0.0	0.04	14.87	0.00	2.256	14.83	0.58	4.5	95.5	0.0	1.38	1.56	0.45	0.67	0.47	9708	618	6	0	0	0	5010	logfile
✔	7ZiR	14738	2023-11-13	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.12	0.00	2.316	0.28	0.00	2.9	97.1	0.0	-3.83	1.03	0.50	0.93	7.96	2120	255	10	0	0	50	0	logfile
✔	8E48	27883	2023-11-15	2022-08-17	2.27	2.95	2.47	2.8	0.005	0.52	0.0	0.03	12.68	0.02	1.808	1.21	0.53	4.6	95.4	0.0	0.36	0.69	0.84	3.07	2.7	0.005	0.72	0.0	0.04	13.95	0.01	1.775	1.78	1.59	6.3	93.6	0.1	-0.67	0.60	0.71	0.90	5.13	115959	1179	11	3016	1	0	41918	logfile
✔	8DST	27688	2023-11-13	2022-07-22	3.2	2.71	2.73	3.4	0.046	2.10	0.0	0.03	22.27	0.00	2.205	41.47	0.00	0.0	0.0	0.0	—	0.44	0.57	—	2.4	0.136	9.30	191.0	0.34	28.93	0.03	1.065	133.79	0.00	0.0	0.0	0.0	—	2.16	0.55	0.80	—	3078	0	54	0	270	0	0	logfile
✔	7LQi	23487	2023-11-14	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.77	3.33	46.5	53.5	0.0	-7.05	1.54	0.65	0.83	2.52	8400	800	100	0	0	0	0	logfile
✔	6T2V	10370	2023-11-18	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.84	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.003	0.69	0.0	0.04	15.62	0.00	2.140	14.75	0.21	3.5	96.5	0.0	0.58	2.38	0.90	0.80	0.55	23826	2847	4	54	0	0	0	logfile
✔	8G8G	29850	2023-11-16	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.005	0.67	0.0	0.04	28.99	0.00	2.187	11.69	0.38	3.0	97.0	0.0	1.66	1.59	0.91	0.87	1.67	14558	931	11	348	0	0	0	logfile
✔	7M4Z	23671	2023-11-20	2021-03-22	2.92	1.87	—	1.6	0.005	0.54	0.0	0.03	15.17	0.02	1.833	4.61	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.004	0.68	0.0	0.04	16.08	0.01	1.687	6.71	2.16	3.7	96.1	0.2	0.41	0.92	0.79	0.76	2.71	138172	5625	70	4373	190	229	0	logfile
✔	8CoM	16777	2023-11-15	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.74	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.003	0.56	0.0	0.03	28.79	0.00	2.194	9.19	0.69	1.2	98.8	0.0	2.37	0.92	0.67	0.80	0.83	10705	708	10	254	0	0	0	logfile
✔	7X57	33010	2023-11-14	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.98	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.004	0.64	0.0	0.03	30.08	0.00	2.256	12.23	0.99	2.9	97.1	0.0	2.66	0.70	0.83	0.79	1.28	9767	595	10	242	0	0	0	logfile
✔	6K9F	9948	2023-11-16	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.22	0.0	0.05	17.69	0.00	2.013	28.27	0.53	1.4	98.6	0.0	-0.68	3.70	0.67	0.84	0.35	8484	1044	12	0	0	0	0	logfile

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