Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FTJ	3295	2023-11-21	2016-01-14	2.3	2.04	—	2.0	0.010	1.30	0.0	0.07	14.89	0.01	1.862	40.83	0.81	5.7	93.3	1.0	-3.32	0.42	0.65	2.67	2.0	0.005	0.91	0.0	0.05	18.72	0.01	2.036	17.11	2.68	7.2	92.7	0.1	-1.40	1.22	0.47	0.68	1.91	34602	4338	18	0	18	120	0	logfile
✔	3JCS	6583	2023-11-15	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.66	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.008	0.93	0.0	0.05	19.96	0.01	1.850	18.68	3.30	10.8	89.1	0.1	-2.82	0.51	0.72	0.81	2.83	117257	5847	74	3420	109	144	0	logfile
✔	5FUU	3308	2023-11-17	2016-01-29	4.19	4.30	—	4.2	0.014	1.86	3.0	0.12	11.14	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.004	0.85	0.0	0.05	13.02	0.00	2.160	14.08	0.05	6.9	92.6	0.6	-1.30	0.96	0.77	0.83	—	20735	2281	70	0	213	0	0	logfile
✔	5FWK	3337	2023-11-19	2016-02-17	3.9	3.97	—	3.9	0.016	1.31	0.0	0.07	9.60	0.01	1.173	2.17	0.00	4.0	95.5	0.5	-0.44	0.77	0.77	1.55	3.9	0.003	0.62	0.0	0.04	14.82	0.00	1.821	11.16	0.28	5.7	94.3	0.0	-0.14	1.24	0.77	0.77	1.68	26221	1612	6	0	4	0	13109	logfile
✘	3JCU	6617	2023-11-18	2016-03-10	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✔	5iRX	8117	2023-11-16	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.73	0.0	0.04	16.65	0.00	2.241	8.73	1.73	8.2	91.8	0.0	-0.58	0.68	0.62	0.82	1.93	13162	1726	12	0	20	0	0	logfile
✔	5iRZ	8118	2023-11-15	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	18.02	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.62	0.0	0.04	16.01	0.00	2.138	8.61	0.55	6.9	93.1	0.0	0.88	0.69	0.65	0.84	3.02	12504	1576	8	0	24	0	0	logfile
✔	5iS0	8119	2023-11-15	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	10.52	0.01	1.283	5.42	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	3.2	0.003	0.75	0.0	0.04	14.23	0.00	2.152	11.06	0.28	5.4	94.6	0.0	-0.22	1.47	0.63	0.81	2.48	11808	1576	8	0	4	0	0	logfile
✔	5iT9	8124	2023-11-19	2016-03-16	3.8	3.86	3.80	3.9	0.007	1.31	42.0	0.10	21.51	0.01	0.713	10.39	9.44	11.2	84.3	4.6	-3.05	0.60	0.76	0.99	3.8	0.005	0.82	0.0	0.04	19.87	0.01	1.831	18.69	1.00	11.5	87.1	1.4	-1.96	1.72	0.62	0.79	0.92	80144	4848	43	1972	83	0	0	logfile
✔	5G04	3385	2023-11-15	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.65	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.008	0.89	0.0	0.04	18.07	0.00	2.003	19.55	0.83	5.9	93.5	0.6	0.04	1.74	0.84	0.77	0.67	65481	8322	22	0	3	0	0	logfile
✔	5G05	3388	2023-11-15	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile
✔	5G06	3366	2023-11-19	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.75	0.0	0.04	14.36	0.00	2.082	17.81	0.00	4.2	95.6	0.1	-0.48	1.80	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	3JCZ	6630	2023-11-18	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.003	0.61	0.0	0.04	13.77	0.00	2.108	9.79	0.28	4.4	95.6	0.0	-0.27	2.05	0.78	0.87	2.10	23286	2976	6	0	0	0	0	logfile
✔	3JD3	6632	2023-11-18	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.65	0.0	0.04	15.34	0.00	2.140	12.61	0.28	4.0	96.0	0.0	-0.42	1.00	0.81	0.83	2.27	24006	2976	12	0	18	0	0	logfile
✔	3JD1	6634	2023-11-18	2016-03-28	3.3	2.71	—	3.0	0.015	1.01	0.0	0.06	8.10	0.01	1.935	12.60	0.00	8.2	91.6	0.2	-5.08	0.79	0.80	3.01	2.5	0.004	0.68	0.0	0.04	15.21	0.00	2.159	9.66	0.28	2.8	97.2	0.0	0.47	1.81	0.80	0.85	2.00	23814	2976	12	0	12	0	0	logfile
✔	3JD2	6635	2023-11-18	2016-03-28	3.3	2.95	—	2.9	0.011	1.04	0.0	0.06	8.84	0.01	2.219	10.21	0.72	5.6	93.6	0.8	-5.54	0.80	0.83	3.54	2.8	0.004	0.60	0.0	0.04	14.29	0.00	2.187	9.17	0.44	4.1	95.9	0.0	0.18	1.19	0.81	0.87	2.36	23814	2976	12	0	12	0	0	logfile
✔	3JD0	6631	2023-11-18	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.40	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.004	0.70	0.0	0.04	14.28	0.00	2.128	14.60	0.16	4.9	94.9	0.1	0.69	2.53	0.85	0.86	2.35	23478	2976	12	0	6	0	0	logfile
✔	3JD4	6633	2023-11-18	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	10.21	0.00	2.157	15.60	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.004	0.63	0.0	0.04	15.60	0.00	2.026	11.75	0.32	3.9	96.1	0.0	0.50	0.72	0.80	0.87	2.40	24054	2982	12	0	18	0	0	logfile
✔	5J8V	8073	2023-11-18	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✔	5G2X	3331	2023-11-17	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.006	0.93	0.0	0.04	19.63	0.01	1.935	41.01	0.91	20.6	78.2	1.3	-4.93	2.35	0.80	0.66	0.49	19072	487	3	704	0	0	0	logfile

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