Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6J99	9783	2023-04-25	2019-01-22	4.1	4.24	—	4.2	0.008	0.98	1.0	0.05	26.78	0.01	2.204	7.71	0.00	8.0	92.0	0.0	-2.88	0.65	0.52	—	4.1	0.004	0.77	0.0	0.04	27.36	0.01	2.114	19.04	0.00	6.3	93.7	0.0	-0.75	2.23	0.78	0.78	—	15266	1164	12	289	0	0	0	logfile
✔	6iFU	9657	2023-04-24	2018-09-21	3.05	3.12	—	3.1	0.012	1.40	0.0	0.08	13.49	0.01	2.207	7.65	1.42	13.9	85.4	0.7	-4.96	0.67	0.80	3.58	3.1	0.003	0.71	0.0	0.04	16.75	0.00	2.017	13.96	0.49	11.5	88.2	0.3	-1.52	0.84	0.68	0.82	2.12	18750	2201	10	62	0	0	0	logfile
✔	6GJ1	0009	2023-04-22	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	7DWB	30880	2023-04-26	2021-01-17	3.15	3.84	—	3.7	0.003	0.62	0.0	0.04	14.17	0.00	2.194	6.72	0.00	11.0	88.7	0.2	-1.95	0.58	0.74	1.74	3.7	0.003	0.67	0.0	0.04	16.48	0.00	2.076	9.61	0.11	11.3	88.5	0.2	-1.54	0.55	0.49	0.69	1.76	23464	2947	7	0	0	0	0	logfile
✔	7QD8	13910	2023-04-23	2021-11-26	3.6	3.90	3.66	3.8	0.004	0.74	0.0	0.05	14.49	0.00	2.273	5.28	0.00	2.3	97.7	0.0	-1.83	0.74	0.69	1.54	3.8	0.003	0.59	0.0	0.04	16.23	0.00	2.155	11.10	0.20	3.0	97.0	0.0	0.33	0.49	0.74	0.69	1.21	14086	1730	2	0	0	0	0	logfile
✔	8A03	15046	2023-04-20	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.002	0.50	0.0	0.05	16.53	0.00	2.187	4.93	0.32	3.0	97.0	0.0	-0.16	0.40	0.50	0.86	2.60	5511	717	3	0	0	0	0	logfile
✔	7XSN	33428	2023-04-20	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	8CYJ	27080	2023-04-21	2022-05-23	3.6	4.32	3.59	3.6	0.003	0.62	0.0	0.04	14.18	0.01	2.056	7.59	0.00	6.7	92.5	0.9	-0.91	0.79	0.57	1.23	3.8	0.004	0.71	0.0	0.04	16.06	0.01	1.894	26.14	0.69	12.0	87.3	0.7	-1.71	0.82	0.81	0.64	0.91	10575	701	5	0	0	0	5089	logfile
✔	7AXZ	11933	2023-04-20	2020-11-10	3.2	3.26	—	3.5	0.009	0.87	0.0	0.05	14.88	0.01	1.911	11.53	0.00	10.2	89.8	0.0	-2.73	0.75	0.78	2.55	3.5	0.003	0.64	0.0	0.04	16.65	0.00	2.192	10.32	0.22	4.0	96.0	0.0	-0.54	1.19	0.75	0.79	1.97	8225	1023	2	0	0	0	0	logfile
✔	6RVY	10018	2023-04-21	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.87	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.003	0.74	0.0	0.04	13.23	0.00	2.369	10.92	0.00	5.0	95.0	0.0	-0.04	0.72	0.64	0.80	—	9627	1290	3	0	0	0	0	logfile
✔	8A02	15045	2023-04-20	2022-05-26	3.2	3.27	3.19	3.3	0.003	0.47	0.0	0.05	14.61	0.00	2.264	4.31	0.00	2.0	98.0	0.0	0.16	0.53	0.84	2.28	3.3	0.004	0.53	0.0	0.05	17.20	0.00	2.228	5.11	0.32	2.3	97.6	0.1	-0.29	0.27	0.52	0.86	2.36	5511	717	3	0	0	0	0	logfile
✘	8EP0	28494	2023-04-27	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✔	7N9Y	24264	2023-04-20	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7TJZ	25947	2023-04-25	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✘	7Z4Z	14511	2023-04-20	2022-03-06	4.0	3.29	3.87	3.9	0.003	0.75	1.0	0.05	14.17	0.01	2.305	11.39	0.00	2.1	97.3	0.6	-4.82	0.61	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4817	673	4	0	0	0	0	logfile
✔	7M1X	23626	2023-04-22	2021-03-15	3.7	4.26	—	4.1	0.007	0.78	0.0	0.04	29.10	0.01	2.244	6.51	2.27	5.5	94.4	0.1	-1.56	0.83	0.84	1.52	4.1	0.006	0.73	0.0	0.04	29.27	0.00	2.053	17.90	0.81	6.3	93.7	0.0	0.87	1.25	0.84	0.85	1.33	11475	746	10	272	0	0	0	logfile
✔	6LTo	0976	2023-04-24	2020-01-23	3.1	3.36	2.98	3.4	0.007	1.00	0.0	0.05	14.55	0.01	2.318	2.17	0.00	7.6	92.4	0.0	-4.14	0.67	0.81	2.32	3.5	0.003	0.66	0.0	0.04	16.10	0.00	2.174	4.74	0.46	7.4	92.6	0.0	0.43	1.59	0.65	0.80	2.14	17255	2156	7	0	0	0	0	logfile
✔	3iZK	5247	2023-04-21	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.75	0.0	0.04	13.81	0.00	2.233	21.48	0.00	2.7	97.3	0.0	-0.42	1.96	0.75	0.55	—	58448	7856	16	0	0	0	0	logfile
✔	8B8G	15913	2023-04-22	2022-10-04	3.39	3.99	3.34	3.8	0.004	0.56	0.0	0.04	13.75	0.01	2.096	11.04	7.59	4.2	95.8	0.0	0.87	0.66	0.82	2.32	3.8	0.003	0.58	0.0	0.04	15.10	0.01	2.158	11.08	0.38	3.8	96.2	0.0	1.30	1.89	0.64	0.81	2.16	12086	1464	2	0	0	0	0	logfile
✔	7KAM	22775	2023-04-21	2020-10-01	3.8	4.43	3.92	4.1	0.003	0.54	0.0	0.04	11.79	0.00	2.150	5.67	0.00	3.0	96.9	0.1	-1.16	0.64	0.82	1.85	4.1	0.004	0.68	0.0	0.04	14.40	0.00	2.140	9.88	0.18	3.3	96.6	0.1	1.54	0.52	0.65	0.84	1.38	10916	1445	7	0	0	0	0	logfile

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