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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PDG | 13337 | 2023-11-14 | 2021-08-05 | 4.3 | 4.51 | — | 3.1 | 0.005 | 0.82 | 0.0 | 0.05 | 14.59 | 0.00 | 2.161 | 16.17 | 0.00 | 5.2 | 94.8 | 0.0 | -0.49 | 0.58 | 0.72 | — | 3.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.74 | 0.00 | 2.173 | 12.63 | 0.00 | 4.3 | 95.7 | 0.0 | 0.21 | 0.88 | 0.58 | 0.72 | — | 7642 | 970 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FYF | 29572 | 2023-11-15 | 2023-01-26 | 3.4 | 3.26 | 3.38 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.09 | 0.00 | 2.218 | 5.61 | 0.14 | 2.7 | 97.3 | 0.0 | 2.89 | 0.57 | 0.83 | 1.72 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 14.55 | 0.00 | 2.209 | 5.68 | 0.14 | 2.4 | 97.6 | 0.0 | 3.58 | 0.93 | 0.55 | 0.85 | 1.53 | 13202 | 830 | 4 | 0 | 0 | 0 | 6754 | logfile |
✔ | 7TXi | 26158 | 2023-11-20 | 2022-02-09 | 3.5 | 3.86 | — | 3.7 | 0.008 | 0.99 | 0.0 | 0.05 | 12.09 | 0.01 | 0.409 | 13.97 | 0.00 | 5.7 | 93.8 | 0.5 | 1.39 | 0.53 | 0.82 | 2.16 | 3.6 | 0.003 | 0.80 | 0.0 | 0.05 | 15.08 | 0.01 | 2.129 | 11.75 | 0.22 | 6.5 | 93.0 | 0.5 | 0.91 | 1.29 | 0.54 | 0.83 | 2.34 | 28660 | 3920 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UAG | 26425 | 2023-11-14 | 2022-03-12 | 3.5 | 3.78 | 3.45 | 3.9 | 0.004 | 0.66 | 0.0 | 0.05 | 13.11 | 0.01 | 2.247 | 17.66 | 0.00 | 6.5 | 93.4 | 0.1 | -1.43 | 0.65 | 0.67 | 1.75 | 3.8 | 0.005 | 0.70 | 0.0 | 0.05 | 15.39 | 0.01 | 2.060 | 17.86 | 0.37 | 6.8 | 93.2 | 0.0 | -1.47 | 0.40 | 0.67 | 0.68 | 1.33 | 7588 | 938 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SUF | 10313 | 2023-11-13 | 2019-09-13 | 3.4 | 3.32 | — | 3.3 | 0.021 | 1.77 | 6.0 | 0.10 | 10.78 | 0.01 | 2.186 | 1.73 | 0.00 | 2.4 | 97.3 | 0.3 | -0.46 | 0.80 | 0.80 | 2.93 | 3.3 | 0.004 | 0.66 | 1.0 | 0.04 | 14.92 | 0.00 | 1.996 | 10.75 | 0.15 | 4.0 | 96.0 | 0.0 | 0.49 | 1.32 | 0.82 | 0.84 | 2.61 | 108112 | 13607 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN4 | 3239 | 2023-11-14 | 2015-11-10 | 4.0 | 4.24 | — | 4.2 | 0.010 | 1.71 | 17.0 | 0.10 | 18.07 | 0.01 | 2.131 | 10.17 | 10.51 | 12.0 | 84.8 | 3.2 | -1.44 | 0.61 | 0.55 | — | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 17.23 | 0.01 | 2.157 | 20.48 | 0.57 | 7.4 | 91.9 | 0.6 | -0.37 | 1.73 | 0.69 | 0.79 | — | 9776 | 1250 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RW8 | 10034 | 2023-11-21 | 2019-06-04 | 2.84 | 2.94 | — | 2.6 | 0.007 | 1.06 | 0.0 | 0.06 | 10.14 | 0.01 | 2.215 | 6.09 | 0.05 | 6.9 | 92.7 | 0.3 | -3.20 | 0.85 | 0.81 | 3.19 | 2.6 | 0.003 | 0.67 | 0.0 | 0.04 | 14.75 | 0.00 | 2.046 | 11.68 | 1.45 | 6.8 | 93.1 | 0.0 | 0.58 | 2.68 | 0.89 | 0.88 | 2.67 | 93500 | 11685 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NPU | 12521 | 2023-11-17 | 2021-02-28 | 4.48 | 4.74 | 4.43 | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 11.87 | 0.01 | 2.086 | 1.37 | 0.37 | 1.8 | 98.1 | 0.1 | -0.61 | 0.66 | 0.68 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.55 | 0.00 | 1.902 | 8.02 | 0.00 | 2.8 | 97.2 | 0.0 | 1.44 | 3.28 | 0.69 | 0.76 | — | 126727 | 8230 | 24 | 0 | 0 | 0 | 64397 | logfile |
✔ | 7RZ9 | 24755 | 2023-11-19 | 2021-08-27 | 4.15 | 3.58 | — | 4.1 | 0.007 | 0.98 | 0.0 | 0.05 | 10.41 | 0.01 | 2.264 | 3.46 | 0.26 | 5.6 | 94.4 | 0.0 | -5.15 | 0.68 | 0.80 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 13.04 | 0.00 | 2.174 | 8.74 | 0.00 | 3.5 | 96.5 | 0.0 | 0.04 | 1.16 | 0.69 | 0.78 | — | 27934 | 3550 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZLG | 11265 | 2023-11-21 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.56 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | 3.1 | 0.003 | 0.40 | 0.0 | 0.03 | 17.92 | 0.00 | 2.131 | 6.27 | 3.28 | 1.6 | 98.4 | 0.0 | 5.28 | 1.17 | 0.82 | 0.90 | 2.58 | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Hi4 | 34812 | 2023-11-17 | 2022-11-18 | 3.35 | 3.51 | 3.32 | 3.5 | 0.006 | 0.87 | 0.0 | 0.06 | 15.95 | 0.00 | 2.231 | 9.91 | 0.35 | 8.1 | 91.9 | 0.0 | -2.10 | 0.65 | 0.63 | 0.65 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 16.96 | 0.00 | 2.150 | 9.76 | 0.59 | 6.7 | 93.3 | 0.0 | -1.00 | 0.53 | 0.68 | 0.70 | 1.11 | 17432 | 2368 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZPG | 11338 | 2023-11-13 | 2020-07-08 | 4.6 | 4.29 | — | 7.0 | 0.004 | 0.99 | 0.0 | 0.05 | 15.64 | 0.01 | 2.313 | 5.51 | 0.25 | 5.6 | 94.4 | 0.0 | -3.85 | 0.60 | 0.55 | — | 7.0 | 0.003 | 0.83 | 0.0 | 0.04 | 15.58 | 0.00 | 2.236 | 19.15 | 0.00 | 6.1 | 93.9 | 0.0 | 0.38 | 1.97 | 0.65 | 0.63 | — | 3808 | 463 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z7Q | 11112 | 2023-11-16 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 16.92 | 0.00 | 2.170 | 21.04 | 0.91 | 17.3 | 82.6 | 0.0 | -4.35 | 1.20 | 0.75 | 0.83 | 1.27 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZET | 6922 | 2023-11-21 | 2018-02-28 | 3.2 | 3.44 | — | 3.4 | 0.012 | 1.22 | 3.0 | 0.06 | 16.75 | 0.01 | 1.189 | 18.16 | 3.90 | 7.9 | 90.7 | 1.4 | -3.69 | 0.68 | 0.74 | 2.06 | 3.4 | 0.007 | 0.85 | 0.0 | 0.05 | 17.04 | 0.01 | 1.926 | 13.71 | 1.12 | 9.3 | 90.3 | 0.4 | -2.27 | 1.98 | 0.69 | 0.80 | 2.08 | 97374 | 3689 | 34 | 3219 | 0 | 0 | 0 | logfile |
✔ | 7W9F | 32366 | 2023-11-13 | 2021-12-09 | 3.6 | 2.59 | — | 2.2 | 0.003 | 0.73 | 0.0 | 0.05 | 13.99 | 0.01 | 2.302 | 3.37 | 0.00 | 3.7 | 96.3 | 0.0 | -3.66 | 0.73 | 0.72 | 1.95 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 16.02 | 0.00 | 2.165 | 10.00 | 0.55 | 4.0 | 96.0 | 0.0 | -1.02 | 0.53 | 0.74 | 0.73 | 1.84 | 4856 | 625 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E89 | 31012 | 2023-11-18 | 2021-03-01 | 4.0 | 3.26 | 3.98 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 14.52 | 0.00 | 2.182 | 19.49 | 0.04 | 10.2 | 89.8 | 0.0 | -2.11 | 0.70 | 0.66 | — | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 16.72 | 0.00 | 2.162 | 16.82 | 0.23 | 9.3 | 90.7 | 0.0 | -2.17 | 0.69 | 0.69 | 0.66 | — | 23528 | 2916 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G6K | 29772 | 2023-11-14 | 2023-02-15 | 3.6 | 3.71 | 3.52 | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 4.19 | 0.00 | 2.523 | 0.20 | 0.00 | 2.7 | 97.3 | 0.0 | 1.65 | 0.54 | 0.71 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 4.50 | 0.00 | 2.284 | 2.64 | 0.00 | 6.7 | 93.3 | 0.0 | 0.05 | 1.47 | 0.54 | 0.74 | — | 9388 | 1379 | 7 | 0 | 0 | 0 | 2576 | logfile |
✔ | 6oFJ | 20047 | 2023-11-15 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.002 | 10.00 | 0.00 | 8.7 | 91.3 | 0.0 | -1.93 | 1.22 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 6BLY | 7113 | 2023-11-15 | 2017-11-12 | 3.36 | 3.46 | — | 3.4 | 0.008 | 1.04 | 1.0 | 0.06 | 9.96 | 0.01 | 2.220 | 7.43 | 0.89 | 8.7 | 91.3 | 0.1 | -4.00 | 0.76 | 0.79 | 3.81 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 14.65 | 0.00 | 2.095 | 10.01 | 0.30 | 6.7 | 93.2 | 0.1 | -1.39 | 0.78 | 0.76 | 0.85 | 3.16 | 12263 | 1540 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DMR | 7965 | 2023-11-17 | 2018-06-05 | 3.9 | 4.25 | — | 4.2 | 0.005 | 0.91 | 0.0 | 0.05 | 10.34 | 0.01 | 2.280 | 3.75 | 0.00 | 4.2 | 95.8 | 0.0 | -4.22 | 0.62 | 0.70 | 1.82 | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 14.83 | 0.00 | 2.196 | 8.14 | 0.33 | 4.1 | 95.9 | 0.0 | -0.41 | 1.74 | 0.75 | 0.87 | 1.32 | 19412 | 2424 | 4 | 0 | 0 | 0 | 0 | logfile |