Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PDG	13337	2023-11-14	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✔	8FYF	29572	2023-11-15	2023-01-26	3.4	3.26	3.38	3.4	0.003	0.58	0.0	0.04	14.09	0.00	2.218	5.61	0.14	2.7	97.3	0.0	2.89	0.57	0.83	1.72	3.3	0.003	0.52	0.0	0.04	14.55	0.00	2.209	5.68	0.14	2.4	97.6	0.0	3.58	0.93	0.55	0.85	1.53	13202	830	4	0	0	0	6754	logfile
✔	7TXi	26158	2023-11-20	2022-02-09	3.5	3.86	—	3.7	0.008	0.99	0.0	0.05	12.09	0.01	0.409	13.97	0.00	5.7	93.8	0.5	1.39	0.53	0.82	2.16	3.6	0.003	0.80	0.0	0.05	15.08	0.01	2.129	11.75	0.22	6.5	93.0	0.5	0.91	1.29	0.54	0.83	2.34	28660	3920	20	0	0	0	0	logfile
✔	7UAG	26425	2023-11-14	2022-03-12	3.5	3.78	3.45	3.9	0.004	0.66	0.0	0.05	13.11	0.01	2.247	17.66	0.00	6.5	93.4	0.1	-1.43	0.65	0.67	1.75	3.8	0.005	0.70	0.0	0.05	15.39	0.01	2.060	17.86	0.37	6.8	93.2	0.0	-1.47	0.40	0.67	0.68	1.33	7588	938	2	0	0	0	0	logfile
✔	6SUF	10313	2023-11-13	2019-09-13	3.4	3.32	—	3.3	0.021	1.77	6.0	0.10	10.78	0.01	2.186	1.73	0.00	2.4	97.3	0.3	-0.46	0.80	0.80	2.93	3.3	0.004	0.66	1.0	0.04	14.92	0.00	1.996	10.75	0.15	4.0	96.0	0.0	0.49	1.32	0.82	0.84	2.61	108112	13607	6	0	0	0	0	logfile
✔	5FN4	3239	2023-11-14	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.48	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	6RW8	10034	2023-11-21	2019-06-04	2.84	2.94	—	2.6	0.007	1.06	0.0	0.06	10.14	0.01	2.215	6.09	0.05	6.9	92.7	0.3	-3.20	0.85	0.81	3.19	2.6	0.003	0.67	0.0	0.04	14.75	0.00	2.046	11.68	1.45	6.8	93.1	0.0	0.58	2.68	0.89	0.88	2.67	93500	11685	5	0	0	0	0	logfile
✔	7NPU	12521	2023-11-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	7RZ9	24755	2023-11-19	2021-08-27	4.15	3.58	—	4.1	0.007	0.98	0.0	0.05	10.41	0.01	2.264	3.46	0.26	5.6	94.4	0.0	-5.15	0.68	0.80	—	4.1	0.003	0.60	0.0	0.04	13.04	0.00	2.174	8.74	0.00	3.5	96.5	0.0	0.04	1.16	0.69	0.78	—	27934	3550	4	0	0	0	0	logfile
✔	6ZLG	11265	2023-11-21	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.40	0.0	0.03	17.92	0.00	2.131	6.27	3.28	1.6	98.4	0.0	5.28	1.17	0.82	0.90	2.58	33008	4072	24	0	0	0	0	logfile
✔	8Hi4	34812	2023-11-17	2022-11-18	3.35	3.51	3.32	3.5	0.006	0.87	0.0	0.06	15.95	0.00	2.231	9.91	0.35	8.1	91.9	0.0	-2.10	0.65	0.63	0.65	3.5	0.003	0.64	0.0	0.04	16.96	0.00	2.150	9.76	0.59	6.7	93.3	0.0	-1.00	0.53	0.68	0.70	1.11	17432	2368	2	0	0	0	0	logfile
✔	6ZPG	11338	2023-11-13	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	7.0	0.003	0.83	0.0	0.04	15.58	0.00	2.236	19.15	0.00	6.1	93.9	0.0	0.38	1.97	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	6Z7Q	11112	2023-11-16	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.92	0.0	0.05	16.92	0.00	2.170	21.04	0.91	17.3	82.6	0.0	-4.35	1.20	0.75	0.83	1.27	16665	2080	5	0	0	0	0	logfile
✔	5ZET	6922	2023-11-21	2018-02-28	3.2	3.44	—	3.4	0.012	1.22	3.0	0.06	16.75	0.01	1.189	18.16	3.90	7.9	90.7	1.4	-3.69	0.68	0.74	2.06	3.4	0.007	0.85	0.0	0.05	17.04	0.01	1.926	13.71	1.12	9.3	90.3	0.4	-2.27	1.98	0.69	0.80	2.08	97374	3689	34	3219	0	0	0	logfile
✔	7W9F	32366	2023-11-13	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.63	0.0	0.04	16.02	0.00	2.165	10.00	0.55	4.0	96.0	0.0	-1.02	0.53	0.74	0.73	1.84	4856	625	3	0	0	0	0	logfile
✔	7E89	31012	2023-11-18	2021-03-01	4.0	3.26	3.98	3.2	0.003	0.63	0.0	0.04	14.52	0.00	2.182	19.49	0.04	10.2	89.8	0.0	-2.11	0.70	0.66	—	3.2	0.003	0.66	0.0	0.04	16.72	0.00	2.162	16.82	0.23	9.3	90.7	0.0	-2.17	0.69	0.69	0.66	—	23528	2916	4	0	0	0	0	logfile
✔	8G6K	29772	2023-11-14	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	6oFJ	20047	2023-11-15	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	6BLY	7113	2023-11-15	2017-11-12	3.36	3.46	—	3.4	0.008	1.04	1.0	0.06	9.96	0.01	2.220	7.43	0.89	8.7	91.3	0.1	-4.00	0.76	0.79	3.81	3.4	0.003	0.64	0.0	0.04	14.65	0.00	2.095	10.01	0.30	6.7	93.2	0.1	-1.39	0.78	0.76	0.85	3.16	12263	1540	2	0	0	0	0	logfile
✔	6DMR	7965	2023-11-17	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.75	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.003	0.68	0.0	0.04	14.83	0.00	2.196	8.14	0.33	4.1	95.9	0.0	-0.41	1.74	0.75	0.87	1.32	19412	2424	4	0	0	0	0	logfile

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