Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V6N	31743	2023-11-21	2021-08-20	3.99	2.98	—	3.3	0.013	1.54	22.0	0.11	13.59	0.00	1.225	8.65	8.11	4.0	94.9	1.1	1.46	0.71	0.48	0.48	2.8	0.004	0.78	0.0	0.04	14.31	0.00	2.045	18.53	0.30	6.9	92.8	0.3	-1.34	1.52	0.76	0.57	1.18	34448	4663	9	0	0	0	0	logfile
✔	7X3J	32989	2023-11-15	2022-03-01	4.2	3.84	4.27	3.9	0.004	0.86	1.0	0.05	14.04	0.00	1.136	5.37	0.10	3.2	96.8	0.0	-5.53	0.59	0.53	—	3.8	0.003	0.68	0.0	0.04	14.31	0.00	1.972	12.43	0.04	4.5	95.5	0.0	-0.98	1.63	0.61	0.57	—	63188	8209	32	0	16	0	0	logfile
✔	8FTE	29424	2023-11-16	2023-01-12	3.8	3.91	3.67	3.8	0.003	0.63	0.0	0.04	12.35	0.00	2.203	12.31	5.56	3.4	96.6	0.0	0.06	0.48	0.50	0.06	3.8	0.003	0.73	0.0	0.04	14.62	0.00	2.147	8.37	0.44	6.4	93.6	0.0	1.70	1.58	0.56	0.57	0.63	14564	2046	22	0	0	0	0	logfile
✔	8iBN	35344	2023-11-14	2023-02-10	3.03	3.55	3.13	3.5	0.007	0.99	0.0	0.06	13.66	0.00	2.296	8.00	0.00	4.0	96.0	0.0	-1.98	0.60	0.53	0.83	3.5	0.003	0.62	0.0	0.05	15.79	0.00	2.053	15.49	0.45	4.1	95.9	0.0	-0.82	1.18	0.62	0.57	0.91	8940	1224	8	0	8	0	0	logfile
✔	3JAU	6366	2023-11-15	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7ZPJ	14855	2023-11-18	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.2	0.003	0.68	0.0	0.04	15.41	0.01	1.919	13.12	0.67	4.4	95.6	0.0	-0.01	1.51	0.64	0.57	0.25	23479	1355	3	55	0	0	11508	logfile
✔	6G90	4364	2023-11-15	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.73	0.03	1.687	19.01	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.004	0.90	0.0	0.04	15.35	0.01	2.101	18.34	0.33	7.3	92.4	0.3	-0.87	3.85	0.58	0.57	—	65050	6796	43	474	223	0	0	logfile
✔	7U13	26276	2023-11-13	2022-02-19	2.9	3.67	—	4.2	0.018	2.43	0.0	0.07	16.46	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	1.02	0.0	0.06	17.50	0.00	2.138	20.90	3.94	11.8	88.2	0.0	-4.59	6.73	0.33	0.57	1.35	3456	405	6	0	12	0	0	logfile
✔	8DWJ	27756	2023-11-13	2022-08-01	3.9	3.19	3.82	3.1	0.005	1.05	0.0	0.06	15.49	0.01	2.218	13.71	0.33	5.9	94.1	0.0	-2.71	0.33	0.57	0.88	3.1	0.003	0.72	0.0	0.05	17.63	0.01	2.225	19.40	0.00	6.8	93.2	0.0	-1.57	2.76	0.32	0.57	0.80	3043	339	3	11	2	0	0	logfile
✔	6ZD0	11172	2023-11-14	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	5Li4	4052	2023-11-17	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7BZX	30262	2023-11-13	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	8CTJ	26992	2023-11-13	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	13.47	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.75	0.0	0.04	13.84	0.00	2.095	14.04	0.00	5.1	94.9	0.0	-0.14	1.80	0.49	0.58	—	3312	401	1	0	1	0	0	logfile
✔	6KRD	0756	2023-11-14	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.67	0.0	0.04	11.93	0.00	2.014	12.31	0.01	3.2	96.7	0.1	0.08	1.78	0.62	0.58	—	61005	8006	16	0	0	0	0	logfile
✔	6Q2J	20572	2023-11-16	2019-08-08	4.1	4.32	—	4.1	0.006	0.98	0.0	0.06	8.67	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.003	0.79	0.0	0.05	12.08	0.00	2.100	11.28	0.00	5.5	94.5	0.0	-1.64	2.03	0.68	0.58	—	13796	1738	8	0	22	0	0	logfile
✔	6Q2N	20575	2023-11-15	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.01	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.004	0.81	0.0	0.05	11.58	0.01	2.192	17.37	0.00	9.9	90.1	0.0	-2.55	0.96	0.61	0.58	—	13140	1678	8	0	8	0	0	logfile
✔	7BC5	12139	2023-11-13	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✔	8P83	17540	2023-11-21	2023-05-31	3.87	4.82	3.91	3.8	0.003	0.66	3.0	0.06	4.70	0.00	2.470	0.84	0.00	2.0	97.9	0.1	0.35	0.81	0.58	—	3.8	0.003	0.79	0.0	0.04	5.70	0.01	2.230	9.10	0.00	7.0	93.0	0.0	-1.97	2.83	0.85	0.58	—	35656	7036	4	0	0	0	0	logfile
✔	7NCJ	12268	2023-11-15	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.60	1.0	0.05	13.98	0.00	1.897	13.84	0.00	11.2	88.8	0.0	-2.88	1.39	0.69	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	7D7R	30610	2023-11-14	2020-10-05	4.0	4.04	—	4.0	0.004	0.96	0.0	0.05	14.87	0.01	2.270	5.25	0.36	3.6	96.2	0.2	-3.66	0.51	0.58	—	3.9	0.003	0.85	0.0	0.04	15.86	0.00	2.198	16.53	0.91	3.4	96.6	0.0	0.50	1.32	0.50	0.58	—	7680	1160	2	0	0	0	0	logfile

• ← previous
• Page 6 of 528
• next →