Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PKE	13469	2023-04-23	2021-08-25	3.3	3.39	3.23	3.3	0.008	0.87	0.0	0.13	13.20	0.01	2.127	2.89	0.00	3.7	96.3	0.0	-0.45	0.76	0.89	5.55	3.3	0.003	0.68	0.0	0.13	14.21	0.00	2.117	3.45	0.22	1.9	98.1	0.0	0.07	1.01	0.72	0.89	4.80	16200	1030	15	0	15	5	7970	logfile
✔	6ZGE	11203	2023-04-28	2020-06-18	2.6	2.79	2.72	2.7	0.010	0.94	0.0	0.06	12.63	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.76	0.85	4.43	2.7	0.003	0.66	0.0	0.05	15.36	0.00	2.151	3.45	1.36	4.0	96.0	0.1	-0.48	0.49	0.78	0.86	4.13	26991	3294	39	0	81	48	0	logfile
✔	7oR1	13037	2023-04-25	2021-06-04	2.64	3.23	—	3.0	0.011	1.12	0.0	0.35	13.08	0.01	2.262	2.89	1.72	6.0	93.7	0.3	-2.01	0.72	0.85	3.37	3.0	0.003	0.54	0.0	0.04	14.80	0.00	2.263	3.47	1.48	3.9	96.1	0.0	1.62	1.12	0.72	0.86	2.78	19869	2384	16	0	33	52	0	logfile
✔	7RLU	24547	2023-04-24	2021-07-26	2.9	2.95	2.85	3.0	0.010	1.28	0.0	0.07	13.03	0.01	2.582	0.25	0.31	5.3	94.0	0.7	-3.29	0.73	0.82	4.31	3.0	0.006	0.69	0.0	0.04	16.97	0.00	2.256	3.48	1.76	3.9	96.1	0.0	-0.50	1.64	0.75	0.88	3.08	18188	2332	12	0	8	28	0	logfile
✔	8A2R	15104	2023-04-23	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.002	0.57	0.0	0.04	16.82	0.00	1.938	3.48	0.90	1.4	98.6	0.0	1.29	1.70	0.73	0.90	5.61	14990	1830	15	0	15	480	0	logfile
✔	7MiR	23862	2023-04-27	2021-04-17	2.5	2.44	—	2.6	0.003	0.48	0.0	0.04	14.23	0.00	1.947	2.91	0.00	3.2	96.8	0.0	1.82	0.72	0.81	3.71	2.6	0.003	0.49	0.0	0.04	15.91	0.00	1.944	3.49	0.70	3.3	96.7	0.0	1.72	1.14	0.73	0.84	3.52	25745	1603	5	0	5	0	12748	logfile
✔	7ZH1	14717	2023-04-27	2022-04-05	2.48	2.28	2.44	2.3	0.007	1.14	0.0	0.07	16.66	0.02	2.120	5.11	2.38	4.3	95.2	0.5	-0.18	0.71	0.79	3.85	2.3	0.005	0.78	0.0	0.05	17.05	0.01	2.194	3.50	2.19	4.9	95.1	0.1	-0.60	0.52	0.74	0.84	4.34	24501	3060	9	0	39	0	0	logfile
✔	7UM7	26599	2023-04-20	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.64	0.0	0.04	15.12	0.00	2.206	3.51	1.68	4.1	95.9	0.0	0.51	0.97	0.83	0.83	4.04	8165	1089	6	0	1	0	0	logfile
✔	6MRU	9213	2023-04-21	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.25	0.00	2.193	3.51	0.00	0.6	99.4	0.0	5.67	3.08	0.76	0.87	1.78	29107	3705	13	0	0	0	0	logfile
✔	7DZW	30915	2023-04-22	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.003	0.81	0.0	0.00	4.68	0.00	2.178	3.51	0.00	11.9	88.0	0.1	-2.05	1.99	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	7V1Y	31630	2023-04-22	2021-08-07	2.82	2.93	—	2.9	0.006	0.78	8.0	0.06	13.04	0.00	2.254	2.36	0.15	2.9	97.1	0.0	1.48	0.69	0.86	3.24	2.9	0.002	0.51	4.0	0.04	16.04	0.00	2.238	3.52	1.05	2.9	97.1	0.0	1.19	0.59	0.68	0.87	3.04	12524	1588	8	0	0	0	0	logfile
✔	6RLB	4918	2023-04-25	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.3	0.003	0.72	0.0	0.04	5.23	0.00	2.224	3.54	0.00	11.8	88.1	0.0	-0.71	1.83	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	7NTM	12591	2023-04-21	2021-03-10	2.86	3.19	2.97	2.8	0.013	1.61	7.0	0.10	15.61	0.00	1.962	17.08	1.77	6.2	93.8	0.0	-3.56	0.98	0.97	4.63	2.8	0.004	0.56	0.0	0.04	15.86	0.00	2.071	3.54	0.65	2.6	97.4	0.0	-0.17	0.92	0.99	0.98	5.35	10336	1388	8	0	8	0	0	logfile
✔	6W2X	21533	2023-04-21	2020-03-08	3.6	3.76	—	3.7	0.005	0.75	0.0	0.05	13.02	0.00	2.034	5.55	0.00	7.1	92.9	0.0	-3.47	0.71	0.76	2.41	3.7	0.003	0.62	0.0	0.04	14.74	0.00	2.196	3.54	0.00	4.4	95.6	0.0	-0.65	0.97	0.73	0.81	2.30	9860	1345	6	0	10	0	0	logfile
✔	7MQB	23941	2023-04-26	2021-05-05	3.25	3.29	3.22	3.3	0.007	0.72	0.0	0.05	13.00	0.00	2.302	2.48	0.66	0.5	99.5	0.0	1.28	0.81	0.86	4.28	3.2	0.004	0.53	0.0	0.05	14.50	0.00	2.211	3.55	0.90	2.9	97.1	0.0	0.80	0.36	0.82	0.89	4.53	12760	1640	16	16	0	0	0	logfile
✔	6CUD	7620	2023-04-25	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.64	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.54	0.0	0.04	13.42	0.00	2.262	3.56	0.16	2.6	97.3	0.1	2.44	1.60	0.72	0.84	1.64	21028	2816	8	0	12	0	0	logfile
✔	7B16	11979	2023-04-25	2020-11-23	3.15	3.24	—	3.2	0.012	0.84	0.0	0.05	13.85	0.01	2.239	4.55	0.00	6.1	93.9	0.0	-1.02	0.73	0.85	3.32	3.2	0.003	0.55	0.0	0.04	15.24	0.00	2.270	3.56	0.13	3.9	96.1	0.0	1.62	0.99	0.70	0.85	2.43	21152	2572	8	0	12	0	0	logfile
✔	7MQi	23948	2023-04-26	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	12.23	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.002	0.47	0.0	0.04	14.20	0.00	2.125	3.56	0.17	2.3	97.7	0.0	1.41	1.80	0.74	0.86	4.11	12696	1640	16	16	0	0	0	logfile
✔	7R0Z	14225	2023-04-20	2022-02-02	3.5	3.71	3.51	3.7	0.005	0.64	0.0	0.05	13.43	0.01	2.203	3.78	0.00	2.5	97.5	0.0	0.47	0.74	0.82	2.38	3.7	0.003	0.55	0.0	0.04	15.21	0.00	2.181	3.56	0.14	2.0	98.0	0.0	0.99	0.32	0.74	0.82	1.90	6891	839	4	0	9	0	0	logfile
✔	6Y5G	10696	2023-04-22	2020-02-25	3.0	3.07	3.02	3.0	0.005	0.66	0.0	0.10	14.32	0.00	2.189	3.69	0.94	4.6	95.4	0.0	-2.94	0.73	0.84	4.03	3.0	0.004	0.67	0.0	0.05	16.78	0.00	2.209	3.56	2.50	4.3	95.7	0.0	-0.74	1.18	0.73	0.86	4.00	12036	1470	18	0	36	0	0	logfile

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