Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SoE	25268	2023-11-19	2021-10-29	2.8	2.87	2.84	2.8	0.010	1.29	0.0	0.07	9.88	0.01	2.416	1.06	0.15	2.0	98.0	0.0	0.29	0.74	0.80	3.95	2.8	0.002	0.60	0.0	0.05	13.26	0.00	2.198	2.81	1.79	1.7	98.3	0.0	0.97	1.02	0.73	0.84	3.06	25947	3783	15	0	57	0	0	logfile
✔	8CPX	16789	2023-11-21	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.7	0.002	0.52	0.0	0.04	15.88	0.00	2.212	2.81	1.31	1.8	98.2	0.0	4.58	0.39	0.78	0.85	7.90	35827	4152	72	0	38	1709	0	logfile
✔	7Q8C	13864	2023-11-16	2021-11-11	2.72	2.78	2.67	2.7	0.005	0.62	0.0	0.05	10.88	0.00	1.953	1.76	0.00	3.0	97.0	0.0	0.25	0.73	0.89	5.04	2.7	0.003	0.64	0.0	0.05	15.05	0.00	1.803	2.86	1.42	3.4	96.6	0.0	0.20	0.89	0.73	0.91	4.28	14975	1850	15	0	10	360	0	logfile
✔	6oVH	20212	2023-11-15	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.89	3.77	10895	1272	36	0	68	171	0	logfile
✔	7UP9	26658	2023-11-15	2022-04-14	2.9	3.12	2.84	3.1	0.003	0.61	0.0	0.05	12.61	0.00	2.192	2.37	0.51	2.7	97.3	0.0	0.12	0.80	0.85	4.34	3.1	0.003	0.54	0.0	0.05	15.36	0.00	2.179	2.87	1.16	2.7	97.3	0.0	0.56	0.76	0.82	0.91	3.57	12168	1556	9	0	14	0	0	logfile
✔	8FoZ	29357	2023-11-18	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.91	0.0	0.06	15.66	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	2.0	0.003	0.56	0.0	0.04	15.87	0.00	2.255	2.90	1.35	0.8	99.2	0.0	0.61	0.87	0.79	0.91	7.08	23648	3072	16	0	16	0	0	logfile
✔	7NPS	12518	2023-11-14	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.002	0.59	0.0	0.05	12.84	0.00	1.895	2.91	0.00	1.8	98.2	0.0	-0.02	0.68	0.83	0.83	2.26	55350	3732	9	0	0	0	27681	logfile
✔	7PKB	13467	2023-11-16	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.2	0.003	0.70	0.0	0.14	13.54	0.00	2.127	2.91	0.00	3.4	96.6	0.0	-0.34	0.58	0.73	0.87	4.70	16145	1030	15	0	10	5	7970	logfile
✔	7oJ5	12938	2023-11-21	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.81	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.005	0.88	0.0	0.05	16.82	0.00	2.107	2.91	1.30	3.3	96.7	0.0	0.56	0.34	0.78	0.89	4.57	35323	4416	72	0	48	931	0	logfile
✔	7QK3	14030	2023-11-13	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	8oQ8	17108	2023-11-16	2023-04-11	2.9	2.64	2.80	2.8	0.014	0.97	0.0	0.08	11.13	0.01	2.175	2.36	0.84	2.3	97.7	0.0	1.82	0.64	0.87	4.88	2.8	0.002	0.53	0.0	0.04	15.52	0.00	2.165	2.92	2.46	2.4	97.6	0.0	1.88	0.84	0.66	0.88	4.05	14432	1680	15	0	46	132	0	logfile
✔	8FHP	29098	2023-11-14	2022-12-14	3.04	3.38	3.13	3.3	0.009	0.80	0.0	0.05	13.21	0.01	2.227	5.38	0.39	3.8	96.2	0.0	-1.88	0.61	0.85	2.63	3.3	0.003	0.52	0.0	0.04	15.11	0.00	2.233	2.93	0.00	2.6	97.4	0.0	0.54	0.32	0.54	0.82	2.12	7306	950	4	0	4	0	0	logfile
✔	7AEK	11747	2023-11-20	2020-09-17	2.5	2.55	—	2.5	0.005	0.87	0.0	0.05	13.77	0.01	1.547	1.89	0.00	2.7	97.3	0.0	-3.80	0.56	0.86	4.32	2.5	0.003	0.69	0.0	0.05	15.74	0.00	2.128	2.96	1.36	3.1	96.9	0.0	0.33	0.47	0.57	0.87	3.75	91116	11808	18	0	0	0	0	logfile
✔	8PHo	17669	2023-11-21	2023-06-20	2.34	2.07	2.33	2.2	0.005	0.77	0.0	0.06	13.64	0.01	2.128	1.78	0.00	1.0	99.0	0.0	-0.02	0.73	0.85	3.99	2.2	0.002	0.50	0.0	0.04	16.96	0.00	2.202	2.96	0.78	0.4	99.6	0.0	1.21	0.50	0.72	0.85	4.41	32172	3804	12	0	0	720	0	logfile
✔	8oQ6	17106	2023-11-16	2023-04-11	3.21	3.07	3.01	3.3	0.004	0.58	0.0	0.08	10.91	0.00	2.259	1.76	0.00	1.8	98.2	0.0	2.69	0.69	0.86	3.86	3.3	0.004	0.54	0.0	0.04	14.66	0.00	2.216	2.97	0.07	2.7	97.3	0.0	1.90	0.86	0.66	0.88	4.18	14477	1680	15	0	47	75	0	logfile
✔	7TM0	25992	2023-11-19	2022-01-19	3.1	3.24	3.21	3.2	0.010	1.37	0.0	0.08	8.70	0.01	2.264	1.47	0.17	2.4	97.6	0.0	0.62	0.73	0.76	3.91	3.2	0.005	0.67	0.0	0.05	11.92	0.00	2.154	2.97	0.17	3.4	96.6	0.0	0.35	1.30	0.78	0.83	3.63	27963	4401	19	0	52	0	0	logfile
✔	8DP5	27630	2023-11-17	2022-07-14	3.1	3.61	3.19	3.5	0.013	1.78	2.0	0.09	12.28	0.02	2.317	0.79	0.00	1.1	98.9	0.0	-0.51	0.80	0.85	4.09	3.5	0.002	0.52	0.0	0.03	14.32	0.00	2.080	2.98	0.11	1.3	98.7	0.0	2.69	2.87	0.74	0.82	2.70	17772	1145	6	0	0	0	8908	logfile
✔	8CVN	27010	2023-11-13	2022-05-18	2.4	3.23	2.42	3.1	0.014	1.53	3.0	0.08	17.95	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.004	0.84	0.0	0.04	18.17	0.00	2.200	2.98	1.93	1.6	98.4	0.0	1.47	0.81	0.76	0.87	3.19	4054	512	4	0	4	0	0	logfile
✔	8CPV	16787	2023-11-21	2023-03-03	1.76	1.73	1.80	1.7	0.006	0.91	0.0	0.07	14.41	0.01	2.182	2.58	0.00	1.0	99.0	0.0	2.15	0.78	0.84	8.93	1.7	0.002	0.49	0.0	0.03	14.99	0.00	2.274	3.00	0.00	1.8	98.2	0.0	4.87	1.19	0.81	0.87	8.51	35855	4152	72	0	38	1737	0	logfile
✔	7STo	25435	2023-11-19	2021-11-14	3.15	3.45	—	3.3	0.007	0.88	0.0	0.04	10.20	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.45	0.0	0.04	12.72	0.00	2.199	3.00	0.08	2.7	97.2	0.1	1.79	1.23	0.71	0.87	2.78	25210	1580	4	0	10	0	12268	logfile

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