Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A6F	3063	2023-04-21	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	7UPi	26667	2023-04-20	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.56	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.002	0.56	0.0	0.04	10.89	0.00	2.006	4.22	0.11	2.1	97.9	0.0	-0.22	2.21	0.90	0.89	3.98	7775	972	5	0	5	0	0	logfile
✔	8B40	15835	2023-04-22	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.003	0.65	0.0	0.04	10.91	0.00	2.129	15.12	0.00	5.6	94.4	0.0	-0.80	1.02	0.76	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	6QD2	4517	2023-04-26	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	7WoG	32651	2023-04-20	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	7T8C	25744	2023-04-28	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	7MVV	24057	2023-04-27	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	6UP7	20836	2023-04-20	2019-10-16	4.2	4.33	—	4.2	0.008	1.08	0.0	0.06	10.36	0.01	2.216	9.73	0.00	13.2	86.8	0.0	-5.14	0.79	0.80	—	4.2	0.003	0.67	0.0	0.04	11.00	0.00	2.199	10.15	0.00	9.4	90.6	0.0	-1.48	1.20	0.78	0.79	—	4166	676	5	0	10	0	0	logfile
✔	5VoT	8721	2023-04-24	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.003	0.69	0.0	0.04	11.01	0.00	2.137	14.03	0.00	6.3	93.7	0.0	0.08	0.85	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	7R9o	24330	2023-04-20	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.60	0.0	0.04	11.04	0.00	1.937	11.65	0.00	4.2	95.8	0.0	-0.51	3.45	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	6CS2	7582	2023-04-28	2018-03-19	4.4	4.80	4.54	4.3	0.007	0.97	0.0	0.06	9.05	0.01	1.972	7.62	0.24	7.0	92.9	0.1	-3.98	0.85	0.82	—	4.3	0.003	0.70	0.0	0.04	11.05	0.00	2.054	13.89	0.00	5.7	94.3	0.0	-1.59	1.23	0.85	0.83	—	27858	3404	34	0	91	0	0	logfile
✔	6QD0	4515	2023-04-26	2018-12-31	4.5	4.65	5.24	4.6	0.009	1.03	0.0	0.05	9.68	0.01	2.001	9.56	0.00	14.2	85.8	0.0	-4.94	0.56	0.71	—	4.6	0.004	0.70	0.0	0.04	11.08	0.01	1.881	15.41	0.00	9.8	90.2	0.0	-1.77	1.19	0.56	0.72	—	21746	1420	5	0	2	0	11100	logfile
✔	7NXD	12637	2023-04-22	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	9.25	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.005	0.89	0.0	0.05	11.12	0.01	1.813	36.75	0.00	7.8	92.2	0.0	-1.51	1.55	0.90	0.73	—	12805	1595	18	0	48	0	0	logfile
✔	7CZ6	30507	2023-04-20	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.004	0.84	0.0	0.05	11.13	0.01	2.108	15.25	0.00	5.5	94.5	0.0	-2.13	0.91	0.65	0.72	—	4535	630	5	0	0	0	0	logfile
✔	7FiK	31600	2023-04-23	2021-07-31	3.7	3.41	—	2.2	0.007	0.98	1.0	0.05	9.93	0.00	1.868	3.44	3.73	6.0	93.8	0.2	-2.13	0.50	0.52	1.35	2.2	0.002	0.60	0.0	0.04	11.18	0.00	2.017	5.54	0.21	3.9	96.1	0.0	1.53	0.65	0.60	0.69	1.62	116163	19039	32	0	722	0	0	logfile
✔	6CEB	7463	2023-04-22	2018-02-11	4.7	5.92	—	4.7	0.006	1.02	0.0	0.06	9.64	0.01	1.288	8.80	0.00	11.8	88.0	0.2	-3.39	0.88	0.82	—	4.7	0.005	0.81	0.0	0.05	11.21	0.00	2.127	25.98	0.00	12.8	87.2	0.0	-2.59	2.07	0.89	0.85	—	11722	1406	20	0	30	0	0	logfile
✔	6XGC	22180	2023-04-24	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	7.79	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.197	11.45	0.05	3.6	96.4	0.0	0.02	1.31	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7EoQ	31227	2023-04-27	2021-04-22	4.1	4.43	—	4.1	0.002	0.47	0.0	0.04	10.23	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.58	0.0	0.04	11.24	0.00	2.184	12.47	0.00	6.4	93.6	0.0	-0.51	1.21	0.88	0.78	—	24742	3144	8	0	10	0	0	logfile
✔	7T54	25694	2023-04-20	2021-12-11	4.5	7.46	4.54	4.6	0.004	0.70	1.0	0.05	10.84	0.00	2.078	8.94	0.68	4.4	95.5	0.1	0.70	0.62	0.64	—	4.6	0.005	0.74	0.0	0.04	11.24	0.00	2.155	18.95	0.00	9.4	90.3	0.3	-0.60	1.60	0.70	0.81	—	8552	1416	4	0	2	0	0	logfile
✔	7SB5	24970	2023-04-29	2021-09-23	4.2	4.53	4.05	4.2	0.021	1.77	8.0	0.11	10.00	0.01	2.138	1.99	0.00	2.2	97.8	0.0	0.57	0.86	0.85	—	4.2	0.003	0.59	0.0	0.04	11.25	0.00	2.160	7.15	0.00	2.9	97.1	0.0	0.47	0.58	0.86	0.87	—	29457	3550	19	0	263	0	0	logfile

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