Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6EZo	4162	2023-11-17	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.008	0.97	0.0	0.05	10.23	0.01	1.979	9.01	0.00	23.2	76.5	0.3	-4.02	0.46	0.78	0.78	—	18758	3367	11	0	1	0	0	logfile
✔	8AA4	15293	2023-11-16	2022-06-29	3.1	3.54	2.92	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.004	0.59	0.0	0.04	10.31	0.00	2.136	4.08	0.00	4.6	95.3	0.1	-0.44	0.94	0.73	0.90	4.26	13616	1742	2	0	0	0	0	logfile
✔	5A6E	3062	2023-11-15	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	6NB7	0404	2023-11-19	2018-12-06	4.5	4.89	—	4.6	0.016	1.50	1.0	0.10	9.02	0.01	2.330	0.87	0.97	3.2	96.6	0.2	0.24	0.80	0.71	—	4.6	0.003	0.79	0.0	0.05	10.43	0.00	2.139	7.53	0.00	5.1	94.9	0.0	-0.44	0.88	0.83	0.78	—	24718	3828	49	0	137	0	0	logfile
✔	5LiJ	4054	2023-11-13	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.17	0.0	0.04	10.44	0.00	2.149	15.78	0.00	35.3	64.7	0.0	-5.53	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6AYG	7020	2023-11-15	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.002	0.59	0.0	0.04	10.50	0.00	2.121	3.95	0.00	2.8	97.2	0.0	2.30	0.90	0.83	0.78	—	10456	1756	4	0	0	0	0	logfile
✔	7LRD	23495	2023-11-16	2021-02-16	3.22	4.04	3.18	3.2	0.003	0.48	0.0	0.04	7.70	0.00	1.795	4.48	0.25	1.3	98.7	0.0	2.71	0.82	0.76	2.88	3.2	0.004	0.52	0.0	0.04	10.53	0.00	2.010	7.20	0.13	2.0	98.0	0.1	2.44	1.19	0.90	0.88	2.64	14346	1766	8	0	8	0	0	logfile
✔	5WC0	8794	2023-11-15	2017-06-29	4.4	4.61	—	4.4	0.006	1.06	0.0	0.05	8.99	0.01	2.043	5.46	0.11	7.9	91.9	0.2	-4.78	0.87	0.79	—	4.4	0.002	0.60	0.0	0.04	10.53	0.00	2.157	9.52	0.00	4.6	95.4	0.0	0.25	1.58	0.87	0.81	—	11460	1660	12	0	6	0	0	logfile
✔	8ARi	15603	2023-11-15	2022-08-16	3.0	3.68	3.06	3.4	0.003	0.50	0.0	0.04	8.12	0.00	2.254	2.40	0.38	4.2	95.7	0.1	-0.94	0.89	0.88	4.79	3.4	0.004	0.51	0.0	0.04	10.54	0.00	2.127	2.33	0.65	3.6	96.4	0.0	0.14	0.94	0.87	0.92	3.81	63756	8160	58	0	24	0	0	logfile
✔	6N2P	9332	2023-11-16	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.003	0.63	0.0	0.04	10.57	0.00	2.170	7.41	0.00	9.3	90.7	0.0	0.33	1.38	0.59	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6QCY	4513	2023-11-18	2018-12-31	4.7	4.78	5.41	4.7	0.009	1.05	0.0	0.05	9.70	0.01	2.012	8.28	0.00	14.0	86.0	0.0	-4.43	0.50	0.63	—	4.7	0.003	0.64	0.0	0.04	10.61	0.00	1.943	9.84	0.00	6.7	93.3	0.0	-2.05	2.16	0.49	0.64	—	21746	1420	6	0	2	0	11100	logfile
✔	6DZL	8935	2023-11-15	2018-07-05	4.14	4.55	—	4.2	0.012	0.95	0.0	0.08	8.57	0.01	2.069	6.05	0.23	12.7	87.3	0.0	-4.57	0.78	0.84	—	4.2	0.004	0.67	0.0	0.04	10.64	0.00	2.158	11.62	0.00	9.4	90.6	0.0	-1.72	1.45	0.79	0.86	—	12693	1587	21	0	30	0	0	logfile
✔	5TV4	8469	2023-11-14	2016-11-08	4.2	4.13	—	4.0	0.008	1.26	0.0	0.06	12.84	0.01	1.511	46.46	0.48	13.1	86.2	0.7	-5.82	0.48	0.57	—	4.0	0.003	0.76	0.0	0.04	10.72	0.00	2.171	9.49	0.00	6.3	93.7	0.0	-0.05	1.54	0.55	0.67	—	6548	1140	5	0	17	0	0	logfile
✔	8E99	27961	2023-11-17	2022-08-26	4.24	4.70	4.27	4.5	0.004	0.82	2.0	0.05	10.60	0.01	1.579	8.15	0.30	7.4	92.2	0.3	-1.79	0.73	0.75	—	4.5	0.003	0.69	0.0	0.05	10.73	0.00	2.204	6.12	0.00	7.8	91.9	0.2	-1.34	0.47	0.74	0.77	—	17583	2710	11	0	10	0	0	logfile
✔	7LH3	23335	2023-11-15	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.62	0.0	0.04	10.77	0.00	2.289	10.84	0.00	3.5	96.5	0.0	1.90	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	5oH0	3809	2023-11-14	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.295	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.004	0.59	0.0	0.04	10.80	0.00	2.200	6.03	0.00	4.8	95.2	0.0	-2.26	0.63	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	7DA4	30622	2023-11-13	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.94	0.0	0.04	10.84	0.00	2.229	17.17	0.00	21.7	78.3	0.0	-5.61	3.07	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	7FiJ	31599	2023-11-13	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	6PZC	20534	2023-11-14	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.52	0.42	9.7	90.3	0.0	-5.15	0.60	0.54	—	4.4	0.004	0.76	0.0	0.04	10.87	0.00	2.109	14.74	0.00	6.0	94.0	0.1	0.10	1.60	0.71	0.78	—	7456	1173	1	0	0	0	0	logfile
✔	3JBR	6475	2023-11-16	2015-09-29	4.2	4.39	—	4.2	0.009	1.31	0.0	0.06	8.32	0.00	1.419	19.19	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.004	0.80	0.0	0.04	10.88	0.00	2.100	16.99	0.00	12.1	85.7	2.2	-0.93	1.54	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile

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