Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CU8	26996	2023-08-23	2022-05-16	1.91	2.52	1.91	2.2	0.005	0.65	0.0	0.05	13.91	0.01	2.043	0.74	0.00	0.6	99.4	0.0	1.28	0.87	0.93	5.94	2.2	0.003	0.53	0.0	0.04	16.47	0.00	1.989	1.18	0.00	0.6	99.4	0.0	5.71	0.29	0.88	0.94	5.13	35271	4032	72	0	24	2271	0	logfile
✔	8EEP	28054	2023-08-10	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile
✔	6WKY	21813	2023-08-11	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.2	0.004	0.93	0.0	0.05	15.54	0.00	2.272	22.09	0.00	0.6	99.4	0.0	-2.05	3.27	0.75	0.87	—	9140	1160	40	0	0	0	0	logfile
✔	3J89	6123	2023-08-11	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.49	0.0	0.03	20.68	0.00	2.114	8.31	1.00	0.6	99.4	0.0	3.03	1.98	0.81	0.79	0.31	9025	551	19	0	0	0	4598	logfile
✔	7T4F	25675	2023-08-10	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.003	0.52	0.0	0.05	15.29	0.00	2.217	4.40	1.41	0.6	99.4	0.0	0.30	0.37	0.34	0.80	4.44	7224	980	4	0	0	0	0	logfile
✔	7o6E	12738	2023-08-23	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile
✔	7P0Z	13153	2023-08-12	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	6A7F	6993	2023-08-12	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.71	0.0	0.04	17.78	0.00	2.148	14.92	0.41	0.7	99.3	0.0	1.97	2.06	0.60	0.86	-0.08	10830	1410	30	0	0	0	0	logfile
✔	7BES	12158	2023-08-11	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.03	0.0	0.05	10.01	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.004	0.58	0.0	0.04	15.51	0.00	2.073	10.07	2.01	0.7	99.3	0.0	0.46	1.16	0.73	0.84	3.14	9446	1234	12	6	4	0	0	logfile
✔	7D84	30612	2023-08-25	2020-10-07	3.7	4.34	3.76	4.2	0.009	0.90	0.0	0.05	15.25	0.01	2.271	6.09	7.78	2.1	97.9	0.0	-2.70	0.84	0.84	2.66	4.2	0.004	0.82	0.0	0.04	17.37	0.00	2.048	13.02	0.56	0.7	99.3	0.0	0.33	1.37	0.82	0.81	2.81	42704	5406	34	0	0	0	0	logfile
✔	7SiP	25147	2023-08-10	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.50	0.0	0.04	15.70	0.00	2.203	3.75	1.74	0.7	99.3	0.0	1.21	0.99	0.59	0.82	2.74	7560	892	12	0	36	20	0	logfile
✔	7UGV	26497	2023-08-09	2022-03-25	2.94	3.59	2.94	3.4	0.003	0.57	0.0	0.04	9.13	0.00	2.111	3.29	0.00	0.7	99.3	0.0	2.34	0.50	0.85	4.24	3.4	0.003	0.57	0.0	0.04	12.67	0.00	2.212	5.33	0.93	0.7	99.3	0.0	3.03	1.30	0.51	0.87	2.79	3107	418	1	0	3	0	0	logfile
✔	8FK7	29249	2023-08-16	2022-12-20	4.3	4.38	4.11	4.2	0.003	0.56	0.0	0.05	11.64	0.00	2.156	10.45	0.00	0.7	99.3	0.0	2.48	0.56	0.82	—	4.2	0.004	0.62	0.0	0.05	12.45	0.00	2.133	11.49	0.05	0.7	99.3	0.0	2.27	0.56	0.57	0.84	—	19740	2720	20	0	0	0	0	logfile
✔	8SZA	40905	2023-08-09	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	14.83	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.61	0.0	0.04	15.68	0.00	2.280	8.99	2.16	0.7	99.3	0.0	2.68	0.49	0.50	0.78	1.33	4800	606	11	0	6	0	0	logfile
✔	6WQ0	21867	2023-08-10	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.003	0.59	0.0	0.04	15.22	0.00	2.243	4.43	0.99	0.7	99.3	0.0	3.09	1.55	0.57	0.89	3.79	57467	6026	48	602	0	0	0	logfile
✔	7XNH	33315	2023-08-15	2022-04-28	3.1	2.98	2.73	2.9	0.006	1.12	0.0	0.05	13.57	0.01	2.144	6.68	0.61	0.6	99.4	0.0	-0.23	0.72	0.87	4.77	2.9	0.002	0.45	0.0	0.04	13.55	0.00	2.333	4.76	0.15	0.8	99.2	0.0	2.76	0.97	0.73	0.84	3.00	19224	2172	24	0	132	0	0	logfile
✔	8FoZ	29357	2023-08-17	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.91	0.0	0.06	15.66	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	2.0	0.003	0.56	0.0	0.04	15.87	0.00	2.255	2.90	1.35	0.8	99.2	0.0	0.61	0.87	0.79	0.91	7.08	23648	3072	16	0	16	0	0	logfile
✔	7XFC	33171	2023-08-12	2022-04-01	2.9	2.59	2.82	2.8	0.007	0.77	0.0	0.04	27.92	0.01	2.333	1.93	0.00	1.6	98.4	0.0	-0.88	0.69	0.75	3.05	2.8	0.004	0.58	0.0	0.04	29.19	0.00	2.105	6.35	2.25	0.8	99.2	0.0	1.91	1.20	0.78	0.85	3.08	11800	750	10	285	1	0	0	logfile
✔	7oNJ	12996	2023-08-14	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	18.33	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.002	0.46	0.0	0.04	18.08	0.00	2.173	8.46	0.61	0.8	99.2	0.0	2.22	1.14	0.75	0.89	4.38	16947	1834	21	0	63	266	0	logfile
✔	7Q66	13853	2023-08-09	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.75	0.0	0.04	16.09	0.00	2.208	12.61	6.92	0.8	99.2	0.0	-4.23	0.65	0.62	0.88	4.75	4807	682	22	0	0	0	0	logfile

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