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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8CU8 | 26996 | 2023-08-23 | 2022-05-16 | 1.91 | 2.52 | 1.91 | 2.2 | 0.005 | 0.65 | 0.0 | 0.05 | 13.91 | 0.01 | 2.043 | 0.74 | 0.00 | 0.6 | 99.4 | 0.0 | 1.28 | 0.87 | 0.93 | 5.94 | 2.2 | 0.003 | 0.53 | 0.0 | 0.04 | 16.47 | 0.00 | 1.989 | 1.18 | 0.00 | 0.6 | 99.4 | 0.0 | 5.71 | 0.29 | 0.88 | 0.94 | 5.13 | 35271 | 4032 | 72 | 0 | 24 | 2271 | 0 | logfile |
✔ | 8EEP | 28054 | 2023-08-10 | 2022-09-07 | 2.2 | 2.31 | 2.33 | 2.3 | 0.004 | 1.00 | 0.0 | 0.71 | 12.36 | 0.00 | 0.286 | 7.98 | 1.59 | 0.0 | 100.0 | 0.0 | 1.98 | 0.74 | 0.81 | 4.21 | 2.3 | 0.030 | 1.63 | 0.0 | 0.12 | 16.78 | 0.01 | 2.001 | 9.57 | 1.36 | 0.6 | 99.4 | 0.0 | 1.73 | 1.37 | 0.74 | 0.81 | 3.61 | 108060 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6WKY | 21813 | 2023-08-11 | 2020-04-17 | 4.2 | 4.29 | — | 4.1 | 0.006 | 0.74 | 0.0 | 0.05 | 16.88 | 0.00 | 2.366 | 8.91 | 0.00 | 0.6 | 99.4 | 0.0 | -5.20 | 0.76 | 0.88 | — | 4.2 | 0.004 | 0.93 | 0.0 | 0.05 | 15.54 | 0.00 | 2.272 | 22.09 | 0.00 | 0.6 | 99.4 | 0.0 | -2.05 | 3.27 | 0.75 | 0.87 | — | 9140 | 1160 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2023-08-11 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.68 | 0.00 | 2.114 | 8.31 | 1.00 | 0.6 | 99.4 | 0.0 | 3.03 | 1.98 | 0.81 | 0.79 | 0.31 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 7T4F | 25675 | 2023-08-10 | 2021-12-09 | 2.7 | 3.13 | 2.69 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 14.61 | 0.00 | 2.228 | 4.75 | 2.44 | 0.3 | 99.7 | 0.0 | 0.54 | 0.33 | 0.71 | 4.04 | 3.1 | 0.003 | 0.52 | 0.0 | 0.05 | 15.29 | 0.00 | 2.217 | 4.40 | 1.41 | 0.6 | 99.4 | 0.0 | 0.30 | 0.37 | 0.34 | 0.80 | 4.44 | 7224 | 980 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o6E | 12738 | 2023-08-23 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | 1.6 | 0.003 | 0.47 | 0.0 | 0.03 | 18.14 | 0.00 | 2.203 | 3.42 | 0.38 | 0.7 | 99.3 | 0.0 | 4.41 | 0.27 | 0.88 | 0.90 | 5.26 | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✔ | 7P0Z | 13153 | 2023-08-12 | 2021-07-01 | 2.43 | 2.02 | 2.41 | 2.2 | 0.016 | 0.94 | 0.0 | 0.06 | 14.02 | 0.01 | 2.141 | 7.29 | 0.00 | 4.3 | 95.7 | 0.0 | 1.90 | 0.83 | 0.86 | 2.91 | 2.3 | 0.002 | 0.49 | 0.0 | 0.03 | 18.12 | 0.00 | 2.239 | 4.38 | 1.64 | 0.7 | 99.3 | 0.0 | 5.47 | 0.55 | 0.84 | 0.87 | 2.18 | 12873 | 1652 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2023-08-12 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 14.92 | 0.41 | 0.7 | 99.3 | 0.0 | 1.97 | 2.06 | 0.60 | 0.86 | -0.08 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BES | 12158 | 2023-08-11 | 2020-12-24 | 2.85 | 2.95 | 2.86 | 2.9 | 0.013 | 1.03 | 0.0 | 0.05 | 10.01 | 0.00 | 2.236 | 7.96 | 0.85 | 0.3 | 99.7 | 0.0 | 0.37 | 0.73 | 0.82 | 3.32 | 2.9 | 0.004 | 0.58 | 0.0 | 0.04 | 15.51 | 0.00 | 2.073 | 10.07 | 2.01 | 0.7 | 99.3 | 0.0 | 0.46 | 1.16 | 0.73 | 0.84 | 3.14 | 9446 | 1234 | 12 | 6 | 4 | 0 | 0 | logfile |
✔ | 7D84 | 30612 | 2023-08-25 | 2020-10-07 | 3.7 | 4.34 | 3.76 | 4.2 | 0.009 | 0.90 | 0.0 | 0.05 | 15.25 | 0.01 | 2.271 | 6.09 | 7.78 | 2.1 | 97.9 | 0.0 | -2.70 | 0.84 | 0.84 | 2.66 | 4.2 | 0.004 | 0.82 | 0.0 | 0.04 | 17.37 | 0.00 | 2.048 | 13.02 | 0.56 | 0.7 | 99.3 | 0.0 | 0.33 | 1.37 | 0.82 | 0.81 | 2.81 | 42704 | 5406 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SiP | 25147 | 2023-08-10 | 2021-10-14 | 3.0 | 3.27 | — | 3.3 | 0.011 | 1.17 | 0.0 | 0.04 | 16.74 | 0.01 | 2.313 | 3.17 | 0.00 | 0.9 | 99.1 | 0.0 | 0.93 | 0.63 | 0.81 | 2.85 | 3.3 | 0.003 | 0.50 | 0.0 | 0.04 | 15.70 | 0.00 | 2.203 | 3.75 | 1.74 | 0.7 | 99.3 | 0.0 | 1.21 | 0.99 | 0.59 | 0.82 | 2.74 | 7560 | 892 | 12 | 0 | 36 | 20 | 0 | logfile |
✔ | 7UGV | 26497 | 2023-08-09 | 2022-03-25 | 2.94 | 3.59 | 2.94 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 9.13 | 0.00 | 2.111 | 3.29 | 0.00 | 0.7 | 99.3 | 0.0 | 2.34 | 0.50 | 0.85 | 4.24 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 12.67 | 0.00 | 2.212 | 5.33 | 0.93 | 0.7 | 99.3 | 0.0 | 3.03 | 1.30 | 0.51 | 0.87 | 2.79 | 3107 | 418 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 8FK7 | 29249 | 2023-08-16 | 2022-12-20 | 4.3 | 4.38 | 4.11 | 4.2 | 0.003 | 0.56 | 0.0 | 0.05 | 11.64 | 0.00 | 2.156 | 10.45 | 0.00 | 0.7 | 99.3 | 0.0 | 2.48 | 0.56 | 0.82 | — | 4.2 | 0.004 | 0.62 | 0.0 | 0.05 | 12.45 | 0.00 | 2.133 | 11.49 | 0.05 | 0.7 | 99.3 | 0.0 | 2.27 | 0.56 | 0.57 | 0.84 | — | 19740 | 2720 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SZA | 40905 | 2023-08-09 | 2023-05-29 | 2.75 | 3.32 | 2.81 | 3.4 | 0.003 | 0.65 | 0.0 | 0.03 | 14.83 | 0.00 | 2.185 | 8.19 | 0.98 | 0.3 | 99.7 | 0.0 | 2.12 | 0.50 | 0.78 | 1.28 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.68 | 0.00 | 2.280 | 8.99 | 2.16 | 0.7 | 99.3 | 0.0 | 2.68 | 0.49 | 0.50 | 0.78 | 1.33 | 4800 | 606 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 6WQ0 | 21867 | 2023-08-10 | 2020-04-28 | 2.8 | 2.89 | — | 2.9 | 0.007 | 0.71 | 0.0 | 0.04 | 13.85 | 0.01 | 2.210 | 4.29 | 0.00 | 1.6 | 98.4 | 0.0 | -0.40 | 0.60 | 0.90 | 4.25 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 15.22 | 0.00 | 2.243 | 4.43 | 0.99 | 0.7 | 99.3 | 0.0 | 3.09 | 1.55 | 0.57 | 0.89 | 3.79 | 57467 | 6026 | 48 | 602 | 0 | 0 | 0 | logfile |
✔ | 7XNH | 33315 | 2023-08-15 | 2022-04-28 | 3.1 | 2.98 | 2.73 | 2.9 | 0.006 | 1.12 | 0.0 | 0.05 | 13.57 | 0.01 | 2.144 | 6.68 | 0.61 | 0.6 | 99.4 | 0.0 | -0.23 | 0.72 | 0.87 | 4.77 | 2.9 | 0.002 | 0.45 | 0.0 | 0.04 | 13.55 | 0.00 | 2.333 | 4.76 | 0.15 | 0.8 | 99.2 | 0.0 | 2.76 | 0.97 | 0.73 | 0.84 | 3.00 | 19224 | 2172 | 24 | 0 | 132 | 0 | 0 | logfile |
✔ | 8FoZ | 29357 | 2023-08-17 | 2023-01-03 | 2.0 | 2.03 | 2.09 | 2.0 | 0.009 | 0.91 | 0.0 | 0.06 | 15.66 | 0.01 | 2.238 | 2.94 | 1.31 | 0.5 | 99.5 | 0.0 | 0.22 | 0.80 | 0.91 | 7.15 | 2.0 | 0.003 | 0.56 | 0.0 | 0.04 | 15.87 | 0.00 | 2.255 | 2.90 | 1.35 | 0.8 | 99.2 | 0.0 | 0.61 | 0.87 | 0.79 | 0.91 | 7.08 | 23648 | 3072 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 7XFC | 33171 | 2023-08-12 | 2022-04-01 | 2.9 | 2.59 | 2.82 | 2.8 | 0.007 | 0.77 | 0.0 | 0.04 | 27.92 | 0.01 | 2.333 | 1.93 | 0.00 | 1.6 | 98.4 | 0.0 | -0.88 | 0.69 | 0.75 | 3.05 | 2.8 | 0.004 | 0.58 | 0.0 | 0.04 | 29.19 | 0.00 | 2.105 | 6.35 | 2.25 | 0.8 | 99.2 | 0.0 | 1.91 | 1.20 | 0.78 | 0.85 | 3.08 | 11800 | 750 | 10 | 285 | 1 | 0 | 0 | logfile |
✔ | 7oNJ | 12996 | 2023-08-14 | 2021-05-25 | 2.3 | 2.52 | 2.24 | 2.5 | 0.009 | 0.86 | 0.0 | 0.05 | 18.33 | 0.00 | 2.155 | 8.48 | 0.47 | 0.8 | 99.2 | 0.0 | -0.25 | 0.76 | 0.88 | 5.16 | 2.5 | 0.002 | 0.46 | 0.0 | 0.04 | 18.08 | 0.00 | 2.173 | 8.46 | 0.61 | 0.8 | 99.2 | 0.0 | 2.22 | 1.14 | 0.75 | 0.89 | 4.38 | 16947 | 1834 | 21 | 0 | 63 | 266 | 0 | logfile |
✔ | 7Q66 | 13853 | 2023-08-09 | 2021-11-05 | 2.79 | 2.87 | 2.63 | 2.9 | 0.021 | 1.42 | 0.0 | 0.11 | 12.58 | 0.01 | 2.277 | 13.59 | 6.52 | 0.0 | 100.0 | 0.0 | -4.18 | 0.63 | 0.84 | 3.82 | 2.9 | 0.004 | 0.75 | 0.0 | 0.04 | 16.09 | 0.00 | 2.208 | 12.61 | 6.92 | 0.8 | 99.2 | 0.0 | -4.23 | 0.65 | 0.62 | 0.88 | 4.75 | 4807 | 682 | 22 | 0 | 0 | 0 | 0 | logfile |