Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7AST	11904	2023-08-22	2020-10-28	4.0	3.84	—	3.6	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.62	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.5	0.016	0.95	0.0	0.05	17.52	0.01	2.125	25.76	0.29	16.7	83.0	0.3	-3.63	1.41	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✔	6SHS	10204	2023-08-10	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.90	0.00	2.248	6.00	0.00	16.4	83.6	0.0	-5.26	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7N64	24193	2023-08-10	2021-06-07	4.2	3.94	—	3.9	0.009	1.06	0.0	0.06	15.21	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.005	0.83	0.0	0.05	13.92	0.01	2.089	23.18	0.13	14.5	85.5	0.0	-2.77	0.52	0.64	0.69	—	7189	906	7	0	7	0	0	logfile
✔	7V1N	31628	2023-08-15	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.52	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.2	0.003	0.70	0.0	0.05	18.12	0.00	2.097	12.66	0.43	11.0	88.8	0.2	-2.89	0.64	0.65	0.74	1.83	19156	2403	2	0	0	0	0	logfile
✔	7LV0	23528	2023-08-30	2021-02-23	3.2	3.59	—	3.2	0.012	1.25	0.0	0.10	15.70	0.02	1.414	29.31	3.83	19.0	79.0	2.0	-4.79	0.81	0.82	1.87	3.2	0.004	0.71	0.0	0.04	16.41	0.01	2.025	16.84	0.98	13.7	86.2	0.1	-2.71	0.50	0.81	0.83	1.17	147330	5851	60	4734	0	0	0	logfile
✔	7STF	25427	2023-08-09	2021-11-12	3.14	3.37	—	3.2	0.009	1.21	0.0	0.06	15.26	0.01	1.998	37.36	0.14	20.1	79.1	0.7	-3.76	0.81	0.70	1.92	3.1	0.004	0.86	0.0	0.05	16.94	0.01	2.111	22.62	0.28	14.3	85.5	0.2	-3.30	0.58	0.81	0.70	1.26	6414	817	5	0	0	0	0	logfile
✔	5W1R	8751	2023-08-18	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.66	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.91	0.0	0.04	13.29	0.01	2.114	13.00	0.04	9.3	89.9	0.7	-1.87	1.91	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile
✔	7F0D	31398	2023-08-23	2021-06-03	3.3	3.34	—	3.3	0.009	1.04	0.0	0.09	18.26	0.01	1.984	20.01	1.00	20.5	79.1	0.4	-5.56	0.58	0.76	2.20	3.3	0.003	0.67	0.0	0.04	17.18	0.01	2.022	15.77	0.54	12.4	87.5	0.1	-3.14	0.36	0.58	0.76	1.57	94362	3216	32	3233	2	3	0	logfile
✔	5Li4	4052	2023-08-16	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	5Y81	6816	2023-08-21	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.26	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.83	0.00	2.062	10.61	0.10	9.3	89.7	1.0	0.85	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	7o7S	12755	2023-08-25	2021-04-13	4.3	4.69	—	4.4	0.009	1.28	7.0	0.07	16.80	0.02	1.857	21.65	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.92	0.0	0.05	14.96	0.01	2.066	26.19	0.00	13.7	86.2	0.1	-3.99	2.51	0.76	0.60	—	41466	5236	17	0	44	0	0	logfile
✔	6JXA	9892	2023-08-13	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✔	7WB5	32395	2023-08-09	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	18.47	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.83	0.0	0.04	16.86	0.01	2.186	16.09	0.00	10.4	89.6	0.0	-3.57	1.62	0.61	0.77	2.22	3256	408	4	0	3	0	0	logfile
✔	7C1D	30269	2023-08-09	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.63	0.0	0.05	14.86	0.00	2.265	16.18	2.08	14.6	85.4	0.0	-4.73	2.82	0.39	0.75	3.16	2034	306	6	0	0	0	0	logfile
✔	7WRQ	32735	2023-08-09	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.29	1.0	0.08	14.58	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.70	0.0	0.04	15.57	0.00	2.263	4.98	0.15	10.5	89.4	0.1	-3.65	0.62	0.87	0.86	2.29	6247	798	5	0	7	0	0	logfile
✔	5N6W	3595	2023-08-25	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.003	0.69	0.0	0.04	11.38	0.01	1.946	14.52	0.13	11.9	87.4	0.7	-3.87	1.92	0.71	0.71	—	40752	2512	16	0	0	0	20032	logfile
✔	6oSJ	20183	2023-08-09	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.76	0.0	0.06	16.80	0.00	2.229	8.87	5.12	13.4	86.6	0.0	-3.90	1.17	0.49	0.79	4.11	4210	610	10	0	0	0	0	logfile
✔	3JD8	6640	2023-08-11	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	16.87	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.005	0.96	0.0	0.05	12.46	0.00	2.015	23.00	0.00	9.8	89.4	0.8	-1.20	1.21	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	7CAH	30331	2023-08-09	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.75	0.0	0.05	14.73	0.01	2.179	14.14	0.37	11.4	88.6	0.0	-3.11	0.60	0.70	0.63	2.02	2889	404	3	0	0	0	0	logfile
✔	7V4C	31707	2023-08-09	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.002	0.61	0.0	0.05	17.20	0.00	2.152	4.55	1.52	6.1	93.9	0.0	-4.30	2.19	0.40	0.82	3.23	1287	186	3	0	0	0	0	logfile

• ← previous
• Page 6 of 542
• next →