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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WUN | 21917 | 2023-02-19 | 2020-05-04 | 3.9 | 4.00 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 13.70 | 0.00 | 2.166 | 14.26 | 1.14 | 18.4 | 81.6 | 0.0 | -6.35 | 0.68 | 0.80 | 1.75 | 3.9 | 0.005 | 0.78 | 0.0 | 0.04 | 14.77 | 0.00 | 2.028 | 12.03 | 0.38 | 16.1 | 83.8 | 0.1 | -3.62 | 0.57 | 0.68 | 0.80 | 1.47 | 10082 | 1326 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2023-02-26 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.0 | 0.005 | 1.06 | 7.0 | 0.06 | 13.43 | 0.01 | 1.446 | 33.80 | 0.00 | 17.6 | 81.8 | 0.6 | -3.77 | 5.52 | 0.80 | 0.43 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D43 | 30568 | 2023-02-27 | 2020-09-22 | 4.3 | 4.40 | — | 4.3 | 0.006 | 0.99 | 0.0 | 0.05 | 14.62 | 0.01 | 2.018 | 28.45 | 0.31 | 18.3 | 81.6 | 0.1 | -6.11 | 0.83 | 0.79 | — | 4.3 | 0.005 | 0.79 | 0.0 | 0.05 | 13.78 | 0.00 | 2.083 | 20.44 | 0.00 | 12.6 | 87.3 | 0.0 | -2.75 | 1.57 | 0.83 | 0.78 | — | 31009 | 4347 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PYH | 20524 | 2023-02-20 | 2019-07-29 | 4.3 | 4.52 | — | 4.3 | 0.016 | 1.05 | 0.0 | 0.05 | 14.64 | 0.01 | 2.079 | 28.75 | 0.55 | 18.2 | 81.6 | 0.2 | -5.21 | 0.84 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13187 | 1648 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oKS | 20103 | 2023-02-20 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.05 | 14.37 | 0.01 | 2.223 | 15.59 | 0.00 | 16.0 | 84.0 | 0.0 | -4.93 | 2.23 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG2 | 31574 | 2023-02-19 | 2021-07-25 | 4.4 | 3.87 | — | 3.9 | 0.007 | 1.13 | 0.0 | 0.05 | 14.43 | 0.01 | 2.053 | 32.64 | 0.19 | 17.8 | 81.7 | 0.4 | -3.95 | 0.38 | 0.65 | — | 3.9 | 0.004 | 0.76 | 0.0 | 0.05 | 14.45 | 0.00 | 2.118 | 18.43 | 0.00 | 13.3 | 86.4 | 0.3 | -2.81 | 0.77 | 0.37 | 0.64 | — | 9342 | 1202 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WXi | 32880 | 2023-02-17 | 2022-02-14 | 4.2 | 4.31 | 4.10 | 4.2 | 0.008 | 0.87 | 2.0 | 0.05 | 15.47 | 0.00 | 2.148 | 24.87 | 0.58 | 18.2 | 81.8 | 0.0 | -4.77 | 0.78 | 0.81 | — | 4.2 | 0.003 | 0.74 | 2.0 | 0.04 | 13.94 | 0.00 | 2.179 | 14.04 | 0.00 | 8.3 | 91.7 | 0.0 | -1.11 | 1.26 | 0.78 | 0.80 | — | 6522 | 862 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WHU | 21676 | 2023-02-24 | 2020-04-08 | 3.93 | 4.34 | — | 4.2 | 0.009 | 0.94 | 2.0 | 0.05 | 15.35 | 0.00 | 2.095 | 18.91 | 0.72 | 18.0 | 81.8 | 0.2 | -4.87 | 0.69 | 0.75 | 1.46 | 4.2 | 0.003 | 0.74 | 2.0 | 0.05 | 16.35 | 0.00 | 2.146 | 12.28 | 0.47 | 10.6 | 89.4 | 0.0 | -1.61 | 0.55 | 0.73 | 0.81 | 1.67 | 23368 | 3120 | 10 | 0 | 16 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2023-02-15 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X0M | 6698 | 2023-02-19 | 2017-01-21 | 3.8 | 3.85 | — | 3.9 | 0.008 | 1.37 | 2.0 | 0.06 | 20.84 | 0.01 | 1.915 | 54.20 | 11.48 | 12.9 | 81.9 | 5.2 | -5.95 | 0.39 | 0.57 | 0.58 | 3.8 | 0.004 | 0.98 | 0.0 | 0.05 | 17.46 | 0.01 | 2.183 | 15.41 | 0.38 | 11.5 | 87.6 | 0.8 | -1.52 | 1.79 | 0.54 | 0.76 | 1.65 | 10654 | 1323 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7oLE | 12979 | 2023-02-26 | 2021-05-19 | 3.41 | 4.34 | 3.59 | 3.9 | 0.013 | 1.74 | 25.0 | 0.10 | 15.12 | 0.01 | 1.371 | 42.05 | 0.38 | 17.2 | 81.9 | 0.8 | -5.68 | 0.55 | 0.26 | -0.19 | 3.6 | 0.003 | 0.80 | 0.0 | 0.04 | 15.95 | 0.01 | 2.131 | 19.19 | 0.29 | 10.0 | 89.8 | 0.2 | -1.90 | 1.96 | 0.77 | 0.76 | 0.84 | 26995 | 2899 | 14 | 0 | 1129 | 0 | 0 | logfile |
✔ | 6F0X | 4166 | 2023-02-23 | 2017-11-20 | 4.6 | 4.72 | — | 4.6 | 0.007 | 0.97 | 0.0 | 0.05 | 9.95 | 0.01 | 1.884 | 34.27 | 0.00 | 17.6 | 81.9 | 0.5 | -5.29 | 0.76 | 0.77 | — | 4.6 | 0.005 | 0.86 | 0.0 | 0.05 | 13.16 | 0.01 | 2.069 | 26.92 | 0.09 | 10.0 | 89.7 | 0.3 | -1.81 | 1.01 | 0.79 | 0.79 | — | 20450 | 2589 | 14 | 0 | 5 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2023-02-21 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 14.03 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.89 | 0.0 | 0.04 | 17.39 | 0.01 | 2.066 | 20.20 | 0.88 | 15.6 | 84.1 | 0.3 | -4.03 | 1.62 | 0.62 | 0.67 | 0.65 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 6oF3 | 20041 | 2023-02-20 | 2019-03-28 | 3.0 | 2.82 | — | 3.7 | 0.008 | 1.59 | 2.0 | 0.08 | 14.70 | 0.01 | 2.058 | 3.96 | 0.85 | 16.1 | 81.9 | 2.0 | -4.36 | 0.70 | 0.65 | 0.87 | 3.5 | 0.004 | 0.86 | 0.0 | 0.04 | 17.54 | 0.01 | 1.905 | 11.24 | 3.82 | 8.4 | 91.5 | 0.1 | -0.13 | 1.66 | 0.79 | 0.83 | 1.42 | 11096 | 1430 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6UXV | 20933 | 2023-02-22 | 2019-11-08 | 4.7 | 4.98 | — | 4.7 | 0.006 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 1.532 | 29.45 | 0.48 | 17.7 | 82.1 | 0.3 | -5.06 | 0.80 | 0.81 | — | 4.7 | 0.003 | 0.77 | 0.0 | 0.04 | 14.49 | 0.00 | 2.098 | 16.79 | 0.06 | 11.6 | 88.2 | 0.1 | -1.00 | 0.73 | 0.79 | 0.79 | — | 16649 | 1920 | 15 | 0 | 273 | 0 | 0 | logfile |
✔ | 5X6o | 6708 | 2023-02-23 | 2017-02-22 | 3.9 | 4.03 | — | 3.9 | 0.007 | 1.01 | 4.0 | 0.06 | 11.26 | 0.00 | 1.863 | 21.05 | 1.64 | 15.8 | 82.1 | 2.2 | -5.44 | 0.60 | 0.72 | 1.68 | 3.9 | 0.003 | 0.79 | 0.0 | 0.04 | 14.79 | 0.00 | 2.177 | 10.09 | 0.29 | 8.4 | 90.3 | 1.3 | -0.74 | 0.82 | 0.62 | 0.76 | 0.97 | 19309 | 2701 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AKV | 11814 | 2023-02-17 | 2020-10-02 | 3.6 | 3.04 | 3.41 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 2.005 | 76.42 | 0.16 | 17.7 | 82.2 | 0.1 | -4.19 | 0.81 | 0.82 | 2.44 | 3.7 | 0.002 | 0.55 | 0.0 | 0.04 | 16.00 | 0.00 | 2.063 | 70.95 | 0.47 | 12.5 | 87.4 | 0.1 | -3.09 | 0.86 | 0.81 | 0.82 | 1.88 | 6201 | 799 | 2 | 0 | 0 | 0 | 245 | logfile |
✔ | 7E3C | 30979 | 2023-02-17 | 2021-02-08 | 4.2 | 3.87 | — | 3.7 | 0.026 | 1.55 | 0.0 | 0.05 | 13.81 | 0.01 | 2.151 | 21.49 | 0.00 | 17.2 | 82.3 | 0.5 | -3.63 | 0.79 | 0.79 | — | 3.7 | 0.004 | 0.74 | 0.0 | 0.05 | 13.74 | 0.00 | 2.114 | 15.30 | 0.00 | 12.3 | 87.7 | 0.0 | -2.92 | 1.13 | 0.79 | 0.79 | — | 2937 | 405 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6oUA | 20200 | 2023-02-17 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NUE | 0519 | 2023-02-23 | 2019-01-31 | 3.3 | 3.58 | — | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 11.15 | 0.00 | 2.214 | 5.49 | 0.34 | 15.3 | 82.3 | 2.4 | -5.57 | 0.58 | 0.57 | 0.80 | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 16.24 | 0.00 | 2.069 | 12.28 | 0.48 | 8.7 | 91.1 | 0.1 | -2.72 | 1.22 | 0.70 | 0.79 | 2.03 | 20175 | 2412 | 12 | 40 | 1 | 0 | 0 | logfile |