Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WUN	21917	2023-02-19	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✔	6HDD	0204	2023-02-26	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.0	0.005	1.06	7.0	0.06	13.43	0.01	1.446	33.80	0.00	17.6	81.8	0.6	-3.77	5.52	0.80	0.43	—	28154	3605	7	0	0	0	0	logfile
✔	7D43	30568	2023-02-27	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.45	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.005	0.79	0.0	0.05	13.78	0.00	2.083	20.44	0.00	12.6	87.3	0.0	-2.75	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✘	6PYH	20524	2023-02-20	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.75	0.55	18.2	81.6	0.2	-5.21	0.84	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13187	1648	3	0	0	0	0	logfile
✔	6oKS	20103	2023-02-20	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.84	0.0	0.05	14.37	0.01	2.223	15.59	0.00	16.0	84.0	0.0	-4.93	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	7FG2	31574	2023-02-19	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	7WXi	32880	2023-02-17	2022-02-14	4.2	4.31	4.10	4.2	0.008	0.87	2.0	0.05	15.47	0.00	2.148	24.87	0.58	18.2	81.8	0.0	-4.77	0.78	0.81	—	4.2	0.003	0.74	2.0	0.04	13.94	0.00	2.179	14.04	0.00	8.3	91.7	0.0	-1.11	1.26	0.78	0.80	—	6522	862	4	0	0	0	0	logfile
✔	6WHU	21676	2023-02-24	2020-04-08	3.93	4.34	—	4.2	0.009	0.94	2.0	0.05	15.35	0.00	2.095	18.91	0.72	18.0	81.8	0.2	-4.87	0.69	0.75	1.46	4.2	0.003	0.74	2.0	0.05	16.35	0.00	2.146	12.28	0.47	10.6	89.4	0.0	-1.61	0.55	0.73	0.81	1.67	23368	3120	10	0	16	0	0	logfile
✔	5Lii	4053	2023-02-15	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	5X0M	6698	2023-02-19	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	3.8	0.004	0.98	0.0	0.05	17.46	0.01	2.183	15.41	0.38	11.5	87.6	0.8	-1.52	1.79	0.54	0.76	1.65	10654	1323	8	0	20	0	0	logfile
✔	7oLE	12979	2023-02-26	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.003	0.80	0.0	0.04	15.95	0.01	2.131	19.19	0.29	10.0	89.8	0.2	-1.90	1.96	0.77	0.76	0.84	26995	2899	14	0	1129	0	0	logfile
✔	6F0X	4166	2023-02-23	2017-11-20	4.6	4.72	—	4.6	0.007	0.97	0.0	0.05	9.95	0.01	1.884	34.27	0.00	17.6	81.9	0.5	-5.29	0.76	0.77	—	4.6	0.005	0.86	0.0	0.05	13.16	0.01	2.069	26.92	0.09	10.0	89.7	0.3	-1.81	1.01	0.79	0.79	—	20450	2589	14	0	5	0	0	logfile
✔	5XLo	6729	2023-02-21	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.004	0.89	0.0	0.04	17.39	0.01	2.066	20.20	0.88	15.6	84.1	0.3	-4.03	1.62	0.62	0.67	0.65	15413	2073	9	38	0	0	0	logfile
✔	6oF3	20041	2023-02-20	2019-03-28	3.0	2.82	—	3.7	0.008	1.59	2.0	0.08	14.70	0.01	2.058	3.96	0.85	16.1	81.9	2.0	-4.36	0.70	0.65	0.87	3.5	0.004	0.86	0.0	0.04	17.54	0.01	1.905	11.24	3.82	8.4	91.5	0.1	-0.13	1.66	0.79	0.83	1.42	11096	1430	6	0	4	0	0	logfile
✔	6UXV	20933	2023-02-22	2019-11-08	4.7	4.98	—	4.7	0.006	0.88	0.0	0.05	15.16	0.01	1.532	29.45	0.48	17.7	82.1	0.3	-5.06	0.80	0.81	—	4.7	0.003	0.77	0.0	0.04	14.49	0.00	2.098	16.79	0.06	11.6	88.2	0.1	-1.00	0.73	0.79	0.79	—	16649	1920	15	0	273	0	0	logfile
✔	5X6o	6708	2023-02-23	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.05	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.003	0.79	0.0	0.04	14.79	0.00	2.177	10.09	0.29	8.4	90.3	1.3	-0.74	0.82	0.62	0.76	0.97	19309	2701	2	0	0	0	0	logfile
✔	7AKV	11814	2023-02-17	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	76.42	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.002	0.55	0.0	0.04	16.00	0.00	2.063	70.95	0.47	12.5	87.4	0.1	-3.09	0.86	0.81	0.82	1.88	6201	799	2	0	0	0	245	logfile
✔	7E3C	30979	2023-02-17	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.81	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.74	0.0	0.05	13.74	0.00	2.114	15.30	0.00	12.3	87.7	0.0	-2.92	1.13	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✘	6oUA	20200	2023-02-17	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.03	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5208	637	3	0	0	0	0	logfile
✔	6NUE	0519	2023-02-23	2019-01-31	3.3	3.58	—	3.6	0.002	0.47	0.0	0.04	11.15	0.00	2.214	5.49	0.34	15.3	82.3	2.4	-5.57	0.58	0.57	0.80	3.6	0.005	0.83	0.0	0.05	16.24	0.00	2.069	12.28	0.48	8.7	91.1	0.1	-2.72	1.22	0.70	0.79	2.03	20175	2412	12	40	1	0	0	logfile

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