The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7AST | 11904 | 2023-08-22 | 2020-10-28 | 4.0 | 3.84 | — | 3.6 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.62 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.5 | 0.016 | 0.95 | 0.0 | 0.05 | 17.52 | 0.01 | 2.125 | 25.76 | 0.29 | 16.7 | 83.0 | 0.3 | -3.63 | 1.41 | 0.64 | 0.50 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2023-08-10 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.002 | 0.64 | 0.0 | 0.05 | 12.90 | 0.00 | 2.248 | 6.00 | 0.00 | 16.4 | 83.6 | 0.0 | -5.26 | 1.68 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 7N64 | 24193 | 2023-08-10 | 2021-06-07 | 4.2 | 3.94 | — | 3.9 | 0.009 | 1.06 | 0.0 | 0.06 | 15.21 | 0.01 | 2.157 | 36.86 | 1.78 | 20.8 | 78.9 | 0.3 | -3.80 | 0.65 | 0.71 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.05 | 13.92 | 0.01 | 2.089 | 23.18 | 0.13 | 14.5 | 85.5 | 0.0 | -2.77 | 0.52 | 0.64 | 0.69 | — | 7189 | 906 | 7 | 0 | 7 | 0 | 0 | logfile |
✔ | 7V1N | 31628 | 2023-08-15 | 2021-08-05 | 3.2 | 3.33 | — | 3.2 | 0.013 | 1.21 | 4.0 | 0.07 | 19.76 | 0.01 | 1.973 | 28.52 | 16.75 | 20.1 | 78.9 | 1.0 | -5.88 | 0.65 | 0.73 | 1.68 | 3.2 | 0.003 | 0.70 | 0.0 | 0.05 | 18.12 | 0.00 | 2.097 | 12.66 | 0.43 | 11.0 | 88.8 | 0.2 | -2.89 | 0.64 | 0.65 | 0.74 | 1.83 | 19156 | 2403 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LV0 | 23528 | 2023-08-30 | 2021-02-23 | 3.2 | 3.59 | — | 3.2 | 0.012 | 1.25 | 0.0 | 0.10 | 15.70 | 0.02 | 1.414 | 29.31 | 3.83 | 19.0 | 79.0 | 2.0 | -4.79 | 0.81 | 0.82 | 1.87 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 16.41 | 0.01 | 2.025 | 16.84 | 0.98 | 13.7 | 86.2 | 0.1 | -2.71 | 0.50 | 0.81 | 0.83 | 1.17 | 147330 | 5851 | 60 | 4734 | 0 | 0 | 0 | logfile |
✔ | 7STF | 25427 | 2023-08-09 | 2021-11-12 | 3.14 | 3.37 | — | 3.2 | 0.009 | 1.21 | 0.0 | 0.06 | 15.26 | 0.01 | 1.998 | 37.36 | 0.14 | 20.1 | 79.1 | 0.7 | -3.76 | 0.81 | 0.70 | 1.92 | 3.1 | 0.004 | 0.86 | 0.0 | 0.05 | 16.94 | 0.01 | 2.111 | 22.62 | 0.28 | 14.3 | 85.5 | 0.2 | -3.30 | 0.58 | 0.81 | 0.70 | 1.26 | 6414 | 817 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W1R | 8751 | 2023-08-18 | 2017-06-04 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.21 | 2.0 | 0.06 | 14.97 | 0.01 | 1.238 | 42.66 | 1.30 | 15.6 | 79.1 | 5.4 | -5.31 | 0.66 | 0.69 | — | 4.4 | 0.003 | 0.91 | 0.0 | 0.04 | 13.29 | 0.01 | 2.114 | 13.00 | 0.04 | 9.3 | 89.9 | 0.7 | -1.87 | 1.91 | 0.66 | 0.69 | — | 25559 | 3563 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F0D | 31398 | 2023-08-23 | 2021-06-03 | 3.3 | 3.34 | — | 3.3 | 0.009 | 1.04 | 0.0 | 0.09 | 18.26 | 0.01 | 1.984 | 20.01 | 1.00 | 20.5 | 79.1 | 0.4 | -5.56 | 0.58 | 0.76 | 2.20 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 17.18 | 0.01 | 2.022 | 15.77 | 0.54 | 12.4 | 87.5 | 0.1 | -3.14 | 0.36 | 0.58 | 0.76 | 1.57 | 94362 | 3216 | 32 | 3233 | 2 | 3 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-08-16 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.004 | 1.04 | 0.0 | 0.05 | 13.71 | 0.01 | 1.950 | 32.75 | 0.09 | 15.2 | 83.8 | 1.0 | -3.85 | 4.19 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Y81 | 6816 | 2023-08-21 | 2017-08-18 | 4.7 | 4.77 | — | 4.6 | 0.012 | 1.24 | 3.0 | 0.06 | 11.53 | 0.01 | 1.581 | 41.26 | 14.19 | 15.5 | 79.2 | 5.3 | -5.73 | 0.66 | 0.69 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 9.83 | 0.00 | 2.062 | 10.61 | 0.10 | 9.3 | 89.7 | 1.0 | 0.85 | 0.83 | 0.70 | 0.73 | — | 25723 | 4095 | 8 | 0 | 360 | 0 | 0 | logfile |
✔ | 7o7S | 12755 | 2023-08-25 | 2021-04-13 | 4.3 | 4.69 | — | 4.4 | 0.009 | 1.28 | 7.0 | 0.07 | 16.80 | 0.02 | 1.857 | 21.65 | 1.09 | 20.1 | 79.2 | 0.7 | -5.96 | 0.75 | 0.58 | — | 4.4 | 0.004 | 0.92 | 0.0 | 0.05 | 14.96 | 0.01 | 2.066 | 26.19 | 0.00 | 13.7 | 86.2 | 0.1 | -3.99 | 2.51 | 0.76 | 0.60 | — | 41466 | 5236 | 17 | 0 | 44 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2023-08-13 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.72 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.005 | 1.04 | 0.0 | 0.05 | 11.62 | 0.01 | 2.085 | 25.04 | 0.00 | 17.4 | 79.8 | 2.8 | -2.41 | 0.95 | 0.65 | 0.59 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WB5 | 32395 | 2023-08-09 | 2021-12-15 | 3.7 | 3.89 | — | 3.9 | 0.011 | 1.41 | 0.0 | 0.09 | 18.47 | 0.02 | 2.188 | 18.30 | 14.00 | 18.2 | 79.6 | 2.2 | -4.90 | 0.61 | 0.78 | 2.04 | 3.9 | 0.004 | 0.83 | 0.0 | 0.04 | 16.86 | 0.01 | 2.186 | 16.09 | 0.00 | 10.4 | 89.6 | 0.0 | -3.57 | 1.62 | 0.61 | 0.77 | 2.22 | 3256 | 408 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2023-08-09 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.63 | 0.0 | 0.05 | 14.86 | 0.00 | 2.265 | 16.18 | 2.08 | 14.6 | 85.4 | 0.0 | -4.73 | 2.82 | 0.39 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WRQ | 32735 | 2023-08-09 | 2022-01-27 | 3.6 | 4.08 | 3.17 | 3.8 | 0.011 | 1.29 | 1.0 | 0.08 | 14.58 | 0.02 | 2.357 | 1.04 | 1.06 | 19.9 | 79.6 | 0.5 | -5.87 | 0.86 | 0.85 | 2.08 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.57 | 0.00 | 2.263 | 4.98 | 0.15 | 10.5 | 89.4 | 0.1 | -3.65 | 0.62 | 0.87 | 0.86 | 2.29 | 6247 | 798 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2023-08-25 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.27 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 11.38 | 0.01 | 1.946 | 14.52 | 0.13 | 11.9 | 87.4 | 0.7 | -3.87 | 1.92 | 0.71 | 0.71 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✔ | 6oSJ | 20183 | 2023-08-09 | 2019-05-01 | 2.8 | 2.81 | — | 2.8 | 0.011 | 1.13 | 0.0 | 0.07 | 13.69 | 0.00 | 2.227 | 10.71 | 0.00 | 18.6 | 79.7 | 1.7 | -4.71 | 0.50 | 0.79 | 4.82 | 2.8 | 0.003 | 0.76 | 0.0 | 0.06 | 16.80 | 0.00 | 2.229 | 8.87 | 5.12 | 13.4 | 86.6 | 0.0 | -3.90 | 1.17 | 0.49 | 0.79 | 4.11 | 4210 | 610 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-08-11 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 16.87 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.005 | 0.96 | 0.0 | 0.05 | 12.46 | 0.00 | 2.015 | 23.00 | 0.00 | 9.8 | 89.4 | 0.8 | -1.20 | 1.21 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 7CAH | 30331 | 2023-08-09 | 2020-06-08 | 3.9 | 4.13 | — | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 13.68 | 0.01 | 2.137 | 18.79 | 0.00 | 19.9 | 79.8 | 0.3 | -5.76 | 0.68 | 0.64 | 2.37 | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 14.73 | 0.01 | 2.179 | 14.14 | 0.37 | 11.4 | 88.6 | 0.0 | -3.11 | 0.60 | 0.70 | 0.63 | 2.02 | 2889 | 404 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V4C | 31707 | 2023-08-09 | 2021-08-12 | 3.3 | 2.93 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.06 | 12.47 | 0.00 | 2.305 | 12.50 | 0.00 | 20.0 | 80.0 | 0.0 | -6.54 | 0.40 | 0.83 | 2.37 | 3.4 | 0.002 | 0.61 | 0.0 | 0.05 | 17.20 | 0.00 | 2.152 | 4.55 | 1.52 | 6.1 | 93.9 | 0.0 | -4.30 | 2.19 | 0.40 | 0.82 | 3.23 | 1287 | 186 | 3 | 0 | 0 | 0 | 0 | logfile |