Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZRE	14912	2023-02-20	2022-05-04	3.4	2.77	3.31	3.2	0.006	0.93	1.0	0.05	15.97	0.01	2.231	7.31	0.00	4.3	95.7	0.0	-0.86	0.61	0.78	2.49	3.3	0.002	0.55	0.0	0.04	16.11	0.00	2.177	11.10	0.09	3.8	96.2	0.0	0.83	0.27	0.62	0.81	2.15	10996	1447	6	0	11	0	0	logfile
✔	7TiB	25616	2023-02-23	2022-01-13	3.4	3.28	3.41	3.3	0.002	0.53	0.0	0.04	16.66	0.00	2.099	8.49	1.09	2.2	97.8	0.0	-1.97	0.64	0.79	1.73	3.2	0.005	0.67	0.0	0.04	18.41	0.00	1.853	11.32	0.61	3.5	96.5	0.0	0.27	0.53	0.65	0.83	2.03	21377	2581	15	42	9	0	0	logfile
✔	7QBC	13886	2023-02-17	2021-11-18	3.53	3.78	3.55	3.8	0.008	0.96	0.0	0.05	14.25	0.01	2.055	3.75	0.43	4.9	95.1	0.0	-2.40	0.56	0.74	2.58	3.8	0.004	0.76	0.0	0.04	16.11	0.00	2.099	13.12	1.06	5.4	94.6	0.0	1.45	0.64	0.61	0.79	1.01	5054	622	6	0	16	0	0	logfile
✔	7ARJ	11884	2023-02-19	2020-10-25	3.2	3.48	—	3.4	0.005	0.80	0.0	0.05	13.11	0.01	2.312	3.21	0.10	5.0	95.0	0.0	-5.75	0.66	0.74	1.55	3.4	0.004	0.72	0.0	0.04	15.64	0.00	2.004	10.04	0.81	5.7	94.3	0.0	-1.40	1.33	0.71	0.83	1.90	9601	1262	8	0	6	0	0	logfile
✔	6FEQ	4246	2023-02-20	2018-01-03	3.6	3.83	—	3.7	0.011	1.04	0.0	0.06	10.44	0.01	2.271	4.71	0.15	5.8	94.2	0.0	-4.17	0.66	0.83	3.20	3.7	0.002	0.66	0.0	0.04	13.21	0.00	2.164	9.63	0.15	4.7	95.3	0.0	0.39	1.31	0.67	0.83	2.71	12397	1582	8	0	3	0	0	logfile
✔	7Yi9	33854	2023-02-17	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.29	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.003	0.57	0.0	0.04	17.36	0.00	2.126	10.96	1.73	4.2	95.8	0.0	-0.57	1.28	0.65	0.78	3.39	5226	634	5	0	1	0	0	logfile
✔	6XoU	22280	2023-02-18	2020-07-07	4.0	4.67	4.02	4.1	0.005	1.06	0.0	0.06	13.63	0.01	2.261	4.13	0.23	2.8	97.2	0.0	-1.51	0.89	0.75	—	4.1	0.003	0.85	0.0	0.04	14.92	0.00	2.157	13.83	0.70	2.6	97.4	0.0	1.32	1.79	0.91	0.85	—	7697	965	1	0	0	0	0	logfile
✔	7MHY	23836	2023-02-18	2021-04-16	2.7	2.86	—	2.8	0.012	1.07	1.0	1.79	21.05	0.01	2.160	6.30	0.54	3.3	96.7	0.0	1.01	0.65	0.88	3.72	2.8	0.004	2.67	0.0	0.28	18.59	0.00	2.183	6.37	2.83	3.4	96.6	0.0	1.32	0.35	0.61	0.88	3.19	7904	912	6	0	18	15	0	logfile
✔	7KJK	22896	2023-02-22	2020-10-26	3.6	3.53	—	3.8	0.009	0.94	0.0	0.05	14.47	0.01	1.919	27.34	1.45	10.7	89.3	0.0	-3.10	0.50	0.82	2.22	3.7	0.004	0.77	0.0	0.05	16.96	0.00	2.062	20.76	1.06	7.8	92.2	0.0	-1.83	0.94	0.49	0.81	1.80	59088	7740	42	0	0	0	0	logfile
✔	7R4T	14316	2023-02-18	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.004	0.55	0.0	0.05	15.87	0.00	2.374	2.12	0.76	2.7	97.3	0.0	-1.45	2.29	0.42	0.89	6.04	7074	456	6	0	0	0	3606	logfile
✔	7R7U	24305	2023-02-25	2021-06-25	4.3	4.05	—	3.8	0.005	1.09	0.0	0.06	15.34	0.01	2.278	7.09	0.04	8.8	91.2	0.0	-3.72	0.78	0.72	—	3.8	0.003	0.75	0.0	0.05	14.74	0.01	2.137	20.79	0.07	8.2	91.7	0.0	-1.23	0.89	0.79	0.73	—	25362	3240	6	0	0	0	0	logfile
✔	7P6A	13223	2023-02-17	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✔	6K43	9913	2023-02-28	2019-05-23	3.7	4.12	—	4.0	0.007	0.72	0.0	0.04	15.85	0.00	1.266	17.54	0.12	6.9	93.1	0.0	-2.02	0.75	0.82	1.49	4.1	0.004	0.72	0.0	0.03	18.20	0.00	2.172	5.80	0.36	3.5	96.5	0.0	4.18	0.82	0.76	0.81	1.59	31808	3840	48	0	36	0	0	logfile
✔	7MDo	23776	2023-02-25	2021-04-05	4.12	4.28	—	4.2	0.005	1.06	0.0	0.06	15.75	0.01	2.283	6.87	0.00	6.7	93.3	0.0	-3.01	0.75	0.75	—	4.2	0.003	0.76	0.0	0.05	14.94	0.00	2.164	19.99	0.00	6.9	93.1	0.0	-0.46	0.97	0.76	0.75	—	25098	3186	12	0	6	0	0	logfile
✔	6PWP	20510	2023-02-21	2019-07-23	4.1	6.04	4.26	4.4	0.010	0.86	0.0	0.05	13.54	0.00	2.096	24.59	0.31	6.8	93.2	0.0	-3.74	0.80	0.87	—	4.4	0.004	0.63	0.0	0.04	13.58	0.00	2.101	15.10	0.00	4.7	95.3	0.0	0.14	1.26	0.80	0.86	—	14903	1960	7	0	0	0	0	logfile
✔	5U6P	8512	2023-02-21	2016-12-08	3.51	3.56	—	3.5	0.007	1.40	0.0	0.07	12.41	0.01	2.399	2.18	0.00	3.2	96.8	0.0	1.31	0.45	0.53	2.72	3.5	0.003	0.58	0.0	0.04	16.16	0.00	2.136	7.85	0.36	2.3	97.7	0.0	2.45	0.66	0.66	0.83	2.45	15640	2016	12	0	80	0	0	logfile
✔	7MDM	23775	2023-02-28	2021-04-05	4.86	5.09	—	5.0	0.005	1.19	0.0	0.07	15.37	0.01	2.261	9.38	0.03	7.9	92.1	0.0	-3.53	0.82	0.77	—	4.9	0.004	0.87	0.0	0.05	14.45	0.01	2.097	32.97	0.00	8.9	91.1	0.0	-2.05	2.41	0.84	0.79	—	31986	4051	12	0	6	0	0	logfile
✔	7ARH	11882	2023-02-19	2020-10-25	3.3	3.57	—	3.5	0.003	0.72	0.0	0.05	12.26	0.00	2.324	2.92	0.20	3.5	96.5	0.0	-5.69	0.70	0.75	0.94	3.5	0.004	0.76	0.0	0.05	15.83	0.00	2.133	15.15	0.98	5.5	94.5	0.0	-1.19	0.91	0.74	0.83	1.43	9649	1261	7	0	2	0	0	logfile
✔	6VCB	21147	2023-02-19	2019-12-20	3.3	3.48	—	3.7	0.006	1.09	0.0	0.06	11.55	0.01	2.117	6.52	0.85	5.0	95.0	0.0	-4.29	0.59	0.75	2.37	3.7	0.003	0.67	0.0	0.04	15.76	0.00	2.134	13.43	0.32	4.3	95.7	0.0	-0.60	1.25	0.60	0.78	1.28	9074	1158	7	0	1	0	0	logfile
✘	7AR8	11876	2023-02-23	2020-10-23	3.53	3.65	3.41	3.6	0.004	0.73	0.0	0.07	14.85	0.00	2.002	12.77	0.03	7.3	92.7	0.0	-0.59	0.78	0.83	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61461	7676	64	0	55	0	0	logfile

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