Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5WLN	8860	2023-08-26	2017-07-27	3.57	4.07	—	4.0	0.010	1.13	0.0	0.06	10.12	0.01	2.206	8.17	0.31	10.7	89.3	0.0	-5.04	0.74	0.75	1.73	4.0	0.004	0.78	0.0	0.05	13.54	0.01	2.097	12.43	0.29	9.5	90.5	0.0	-2.69	1.38	0.74	0.76	2.08	44415	5940	15	0	0	0	0	logfile
✔	7TF3	25860	2023-08-17	2022-01-06	2.25	2.94	—	2.8	0.005	0.82	0.0	0.06	13.08	0.01	2.287	3.03	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.004	0.60	0.0	0.05	15.15	0.00	2.157	6.64	1.44	2.4	97.6	0.0	0.72	1.86	0.79	0.84	3.55	21873	2703	24	0	56	0	0	logfile
✔	7YR5	34046	2023-08-09	2022-08-08	3.63	3.97	3.62	3.9	0.005	0.81	0.0	0.05	13.92	0.00	2.250	8.97	0.00	5.5	94.5	0.0	-0.05	0.57	0.78	1.28	3.9	0.003	0.64	0.0	0.04	16.36	0.00	2.157	10.52	0.57	5.4	94.6	0.0	0.24	0.52	0.57	0.79	0.98	4828	622	2	0	0	0	0	logfile
✔	6VQU	21357	2023-08-15	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.09	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.003	0.72	0.0	0.04	14.96	0.00	2.196	12.02	0.32	2.6	97.4	0.0	2.01	1.05	0.73	0.88	0.26	9156	1178	2	0	0	0	0	logfile
✔	7SSX	25416	2023-08-12	2021-11-11	2.89	3.04	—	3.1	0.012	1.38	12.0	0.10	12.35	0.01	2.251	3.61	2.61	5.0	95.0	0.0	-1.17	0.65	0.80	3.42	3.1	0.004	0.66	0.0	0.04	15.26	0.01	2.220	6.21	1.30	3.8	96.2	0.0	2.22	1.11	0.58	0.84	3.89	11283	1384	5	0	3	0	0	logfile
✔	7N0D	24104	2023-08-17	2021-05-25	2.5	3.26	—	3.2	0.005	0.85	0.0	0.05	13.20	0.01	2.032	4.21	0.00	1.1	98.9	0.0	-2.65	0.72	0.78	4.49	3.2	0.003	0.56	0.0	0.04	14.89	0.00	2.000	6.58	0.63	3.5	96.5	0.0	-0.44	1.18	0.71	0.77	3.98	21846	2572	26	76	28	4	0	logfile
✔	7S8V	24927	2023-08-12	2021-09-20	3.73	4.42	—	3.9	0.004	0.65	0.0	0.09	12.46	0.00	2.098	5.61	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.003	0.68	0.0	0.04	14.49	0.00	1.955	15.73	0.00	9.4	90.6	0.0	-2.21	1.59	0.70	0.71	0.69	12502	782	7	0	12	0	6045	logfile
✔	8G07	29648	2023-08-10	2023-01-31	2.8	3.02	2.81	3.0	0.008	0.81	1.0	0.04	14.12	0.01	2.253	7.46	1.15	2.5	97.5	0.0	1.07	0.64	0.80	2.47	3.1	0.003	0.54	0.0	0.04	15.72	0.00	2.193	11.42	2.16	1.6	98.4	0.0	1.58	0.42	0.65	0.83	1.67	7467	1045	13	0	1	0	0	logfile
✔	7TF1	25858	2023-08-12	2022-01-06	3.57	4.05	—	3.9	0.004	0.77	0.0	0.06	12.65	0.01	2.300	2.67	0.36	2.5	97.5	0.0	-1.40	0.60	0.81	2.33	3.9	0.003	0.62	0.0	0.05	14.39	0.00	2.128	9.85	0.22	3.3	96.7	0.0	-0.40	0.76	0.61	0.83	1.68	12786	1608	12	0	12	0	0	logfile
✔	7SY5	25517	2023-08-25	2021-11-24	2.59	3.51	—	2.8	0.005	0.82	0.0	0.05	13.39	0.01	2.281	3.07	0.00	2.1	97.9	0.0	-0.13	0.81	0.77	2.06	2.9	0.004	0.63	0.0	0.04	15.42	0.00	2.125	10.69	1.30	2.6	97.4	0.0	0.80	1.27	0.82	0.81	2.28	40083	4908	30	0	78	0	0	logfile
✔	6YLY	10842	2023-08-14	2020-04-07	3.8	3.72	3.83	3.7	0.013	1.20	3.0	0.06	17.41	0.01	1.952	6.32	0.11	2.4	97.5	0.0	-4.15	0.80	0.80	1.65	3.7	0.007	0.83	1.0	0.04	17.79	0.01	1.761	20.74	0.73	9.6	90.3	0.1	-1.99	0.65	0.81	0.82	1.38	120663	7352	52	2899	3	0	0	logfile
✔	7MLV	23911	2023-08-13	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	10.90	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.014	1.03	0.0	0.05	12.11	0.01	2.077	29.77	0.00	11.6	88.4	0.0	-3.33	1.72	0.70	0.70	—	15055	1919	16	0	22	0	0	logfile
✔	7XHT	33198	2023-08-10	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	14.64	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.002	0.52	0.0	0.03	15.90	0.00	1.997	6.66	1.75	2.0	98.0	0.0	0.73	0.35	0.65	0.85	4.80	7839	395	6	220	3	0	0	logfile
✔	8A9J	15284	2023-08-18	2022-06-28	2.8	2.90	2.77	2.9	0.018	0.78	0.0	0.06	15.77	0.00	1.301	5.21	0.07	1.5	98.5	0.0	0.69	0.70	0.80	2.89	2.9	0.003	0.55	0.0	0.04	16.17	0.00	2.182	6.26	1.00	1.4	98.6	0.0	1.99	1.12	0.69	0.84	2.40	24233	2952	8	0	59	0	0	logfile
✔	7KML	22926	2023-08-23	2020-11-03	3.8	4.97	3.83	3.8	0.018	1.87	0.0	0.10	10.57	0.01	2.415	0.65	0.39	1.9	98.1	0.0	0.45	0.89	0.76	0.63	3.9	0.004	0.76	0.0	0.05	14.48	0.00	2.126	22.41	0.24	5.2	94.8	0.0	-0.41	1.83	0.91	0.82	0.35	35136	4413	39	0	78	0	0	logfile
✔	7NQK	12528	2023-08-09	2021-03-01	3.5	3.75	3.51	3.6	0.005	0.84	0.0	0.05	14.92	0.00	2.035	16.48	0.90	8.6	91.4	0.0	-1.81	0.58	0.82	2.00	3.7	0.003	0.72	0.0	0.04	16.78	0.00	2.134	12.75	0.75	8.9	91.1	0.0	-0.66	0.46	0.58	0.81	1.58	6139	781	2	0	0	0	0	logfile
✔	7TEW	25853	2023-08-10	2022-01-06	3.52	4.17	—	3.8	0.005	0.85	0.0	0.06	13.32	0.01	2.344	2.89	0.14	1.4	98.6	0.0	0.00	0.82	0.82	2.55	3.8	0.003	0.62	0.0	0.04	15.64	0.00	2.219	10.23	0.00	2.6	97.4	0.0	1.68	1.58	0.83	0.84	2.14	6555	797	4	0	7	0	0	logfile
✔	7T90	25749	2023-08-13	2021-12-17	3.32	3.71	—	3.6	0.006	0.95	3.0	0.06	12.70	0.00	2.146	10.23	0.23	5.1	94.9	0.0	-0.77	0.69	0.79	2.80	3.6	0.003	0.59	0.0	0.04	15.17	0.00	2.051	8.90	0.46	4.5	95.5	0.0	0.02	0.47	0.70	0.83	1.99	8451	1124	6	0	1	1	0	logfile
✔	8CVY	27021	2023-08-15	2022-05-18	3.6	3.82	3.60	3.8	0.008	1.47	16.0	0.12	15.01	0.01	2.214	10.00	6.05	2.7	97.3	0.0	0.51	0.70	0.79	1.45	3.8	0.003	0.64	0.0	0.04	16.69	0.00	2.135	13.74	0.37	3.4	96.6	0.0	0.65	1.00	0.73	0.79	1.76	17930	2226	7	0	0	0	0	logfile
✔	8DM7	27529	2023-08-23	2022-07-08	2.49	3.10	2.62	2.7	0.005	0.84	0.0	0.06	13.31	0.01	2.296	3.28	0.58	1.6	98.4	0.0	0.44	0.79	0.78	2.55	2.8	0.005	0.67	0.0	0.05	15.56	0.00	2.163	10.66	1.64	2.7	97.3	0.0	0.46	1.33	0.80	0.83	2.61	35165	4330	28	0	61	0	0	logfile

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