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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6RX4 | 10049 | 2023-07-04 | 2019-06-07 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7347 | 884 | 8 | 0 | 31 | 7 | 0 | logfile |
✘ | 7E2Y | 30972 | 2023-07-04 | 2021-02-07 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6987 | 868 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 5UJZ | 8561 | 2023-07-16 | 2017-01-19 | 4.8 | 5.22 | — | 5.1 | 0.010 | 1.28 | 0.0 | 0.06 | 10.85 | 0.01 | 2.072 | 3.55 | 0.16 | 7.6 | 92.3 | 0.1 | -3.77 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 6KUR | 9581 | 2023-07-06 | 2019-09-02 | 3.7 | 3.80 | — | 3.8 | 0.004 | 0.79 | 0.0 | 0.05 | 10.86 | 0.01 | 2.143 | 6.20 | 1.01 | 7.0 | 92.9 | 0.1 | -4.96 | 0.74 | 0.78 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12384 | 1465 | 5 | 28 | 0 | 0 | 0 | logfile |
✘ | 7BSP | 30163 | 2023-07-06 | 2020-03-31 | 4.0 | 4.12 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 13.90 | 0.01 | 1.928 | 53.93 | 0.00 | 14.6 | 85.4 | 0.0 | -7.27 | 0.68 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11010 | 1352 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 6GDG | 4390 | 2023-07-04 | 2018-04-23 | 4.11 | 3.92 | — | 4.0 | 0.008 | 1.10 | 0.0 | 0.06 | 12.81 | 0.00 | 2.449 | 0.87 | 2.07 | 4.9 | 94.6 | 0.5 | -3.15 | 0.76 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7223 | 997 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 5UK0 | 8562 | 2023-07-16 | 2017-01-19 | 4.8 | 5.42 | — | 5.2 | 0.010 | 1.26 | 0.0 | 0.06 | 10.88 | 0.01 | 2.096 | 3.58 | 0.16 | 8.3 | 91.6 | 0.1 | -3.58 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 5UK1 | 8563 | 2023-07-16 | 2017-01-19 | 4.8 | 7.30 | — | 7.0 | 0.010 | 1.28 | 0.0 | 0.07 | 10.82 | 0.01 | 2.106 | 4.22 | 0.16 | 8.1 | 91.8 | 0.1 | -3.97 | 0.88 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 8DQ0 | 27645 | 2023-07-10 | 2022-07-18 | 3.74 | 3.61 | 3.79 | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 15.88 | 0.01 | 2.203 | 6.20 | 1.20 | 4.9 | 95.1 | 0.0 | -1.54 | 0.53 | 0.72 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17129 | 1075 | 6 | 0 | 2 | 0 | 8445 | logfile |
✘ | 7QHo | 13977 | 2023-07-17 | 2021-12-13 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93446 | 5870 | 54 | 0 | 78 | 10 | 44952 | logfile |
✘ | 7ND7 | 12278 | 2023-07-16 | 2021-01-30 | 3.6 | 3.91 | — | 3.8 | 0.004 | 0.63 | 0.0 | 0.05 | 11.00 | 0.00 | 2.229 | 3.62 | 0.38 | 3.7 | 96.2 | 0.2 | -0.12 | 0.77 | 0.72 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29591 | 3699 | 30 | 0 | 64 | 0 | 0 | logfile |
✘ | 6MZU | 9307 | 2023-07-15 | 2018-11-05 | 3.4 | 3.56 | — | 3.5 | 0.006 | 0.72 | 0.0 | 0.05 | 8.11 | 0.01 | 2.309 | 6.63 | 0.03 | 2.5 | 97.5 | 0.0 | -4.73 | 0.78 | 0.85 | 4.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ND4 | 12275 | 2023-07-14 | 2021-01-30 | 3.6 | 3.31 | — | 3.2 | 0.004 | 0.62 | 3.0 | 0.05 | 11.02 | 0.00 | 2.233 | 3.79 | 0.28 | 4.1 | 95.6 | 0.2 | -0.12 | 0.74 | 0.79 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29848 | 3729 | 30 | 0 | 71 | 0 | 0 | logfile |
✘ | 8DQ1 | 27646 | 2023-07-10 | 2022-07-18 | 4.1 | 3.85 | 3.29 | 3.9 | 0.011 | 1.10 | 3.0 | 0.06 | 18.76 | 0.01 | 2.082 | 14.69 | 0.87 | 5.7 | 94.3 | 0.0 | -1.40 | 0.44 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17754 | 1075 | 8 | 36 | 2 | 0 | 8343 | logfile |
✘ | 6oLL | 20116 | 2023-07-10 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oY8 | 13110 | 2023-07-11 | 2021-06-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22902 | 2293 | 103 | 0 | 68 | 372 | 0 | logfile |
✘ | 6UKN | 20807 | 2023-07-03 | 2019-10-05 | 3.65 | 3.85 | — | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 13.77 | 0.01 | 2.280 | 4.10 | 0.47 | 7.7 | 92.3 | 0.0 | -2.59 | 0.70 | 0.82 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4109 | 536 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 7DXA | 30902 | 2023-07-07 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15162 | 1629 | 23 | 0 | 50 | 0 | 0 | logfile |
✘ | 6R10 | 4703 | 2023-07-17 | 2019-03-13 | 4.3 | 4.31 | — | 4.2 | 0.007 | 0.96 | 0.0 | 0.06 | 9.71 | 0.01 | 2.155 | 5.28 | 0.11 | 7.6 | 92.4 | 0.0 | -3.74 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38522 | 5842 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 6R0Z | 4702 | 2023-07-18 | 2019-03-13 | 3.8 | 3.83 | — | 3.8 | 0.007 | 0.97 | 1.0 | 0.06 | 9.78 | 0.01 | 2.152 | 4.34 | 0.19 | 6.2 | 93.8 | 0.0 | -3.88 | 0.85 | 0.85 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40184 | 5847 | 27 | 0 | 3 | 0 | 0 | logfile |