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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DNC | 7970 | 2024-03-01 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 22.18 | 0.01 | 1.764 | 6.82 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.006 | 0.77 | 0.0 | 0.04 | 23.73 | 0.01 | 1.921 | 38.39 | 2.65 | 10.6 | 89.3 | 0.1 | -1.80 | 3.09 | 0.96 | 0.91 | 0.33 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 7MSM | 23969 | 2024-03-01 | 2021-05-11 | 2.79 | 2.41 | — | 2.8 | 0.009 | 0.88 | 0.0 | 0.05 | 22.18 | 0.01 | 2.013 | 2.32 | 0.18 | 6.8 | 93.1 | 0.2 | -4.70 | 0.86 | 0.87 | 4.28 | 2.8 | 0.007 | 0.68 | 0.0 | 0.04 | 22.28 | 0.01 | 1.838 | 6.13 | 2.82 | 6.4 | 93.5 | 0.1 | -1.48 | 0.42 | 0.85 | 0.88 | 3.22 | 152436 | 6179 | 69 | 4836 | 455 | 0 | 0 | logfile |
✔ | 8HFR | 34725 | 2024-03-01 | 2022-11-12 | 2.64 | 2.91 | 2.81 | 2.8 | 0.007 | 0.95 | 0.0 | 0.05 | 22.17 | 0.01 | 1.596 | 2.16 | 0.60 | 7.9 | 91.6 | 0.4 | -3.35 | 0.76 | 0.86 | 4.01 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 22.15 | 0.00 | 1.893 | 4.96 | 3.78 | 6.2 | 93.8 | 0.1 | -0.64 | 0.28 | 0.77 | 0.88 | 3.72 | 152374 | 10776 | 69 | 3551 | 237 | 0 | 0 | logfile |
✔ | 7MSZ | 23972 | 2024-03-28 | 2021-05-12 | 3.1 | 2.44 | — | 2.9 | 0.013 | 1.14 | 1.0 | 0.06 | 22.78 | 0.01 | 1.949 | 3.55 | 0.54 | 9.3 | 90.6 | 0.1 | -4.96 | 0.83 | 0.84 | 3.69 | 2.9 | 0.008 | 0.78 | 0.0 | 0.04 | 22.66 | 0.01 | 1.764 | 8.48 | 4.69 | 8.4 | 91.5 | 0.1 | -2.28 | 0.46 | 0.83 | 0.85 | 2.69 | 152345 | 6171 | 72 | 4836 | 427 | 0 | 0 | logfile |
✘ | 7PiN | 13444 | 2024-03-28 | 2021-08-22 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152240 | 14846 | 170 | 0 | 721 | 0 | 0 | logfile |
✔ | 6BU8 | 7289 | 2024-03-27 | 2017-12-08 | 3.5 | 4.67 | — | 3.7 | 0.006 | 0.91 | 0.0 | 0.08 | 21.95 | 0.01 | 2.239 | 17.31 | 0.70 | 14.8 | 81.8 | 3.4 | -5.26 | 0.91 | 0.87 | 0.88 | 3.7 | 0.003 | 0.66 | 0.0 | 0.03 | 23.43 | 0.00 | 1.956 | 21.91 | 4.30 | 9.2 | 90.5 | 0.3 | -1.78 | 1.42 | 0.91 | 0.88 | 0.72 | 152151 | 6272 | 61 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6FTJ | 4317 | 2024-03-28 | 2018-02-22 | 4.7 | 4.88 | — | 4.7 | 0.011 | 1.39 | 18.0 | 0.10 | 25.54 | 0.01 | 0.475 | 12.11 | 11.77 | 9.8 | 87.8 | 2.4 | -4.05 | 0.63 | 0.62 | — | 4.7 | 0.007 | 1.00 | 0.0 | 0.05 | 24.64 | 0.01 | 0.951 | 43.92 | 0.04 | 11.6 | 87.9 | 0.5 | -2.52 | 1.18 | 0.67 | 0.71 | — | 152111 | 8263 | 74 | 3938 | 461 | 0 | 0 | logfile |
✔ | 7MSH | 23962 | 2024-03-27 | 2021-05-11 | 3.23 | 2.43 | — | 3.0 | 0.008 | 0.89 | 0.0 | 0.05 | 22.51 | 0.01 | 1.993 | 3.36 | 0.06 | 8.8 | 91.1 | 0.1 | -4.94 | 0.80 | 0.81 | 3.38 | 3.0 | 0.009 | 0.81 | 0.0 | 0.05 | 22.47 | 0.01 | 1.743 | 9.11 | 2.81 | 8.6 | 91.3 | 0.0 | -2.29 | 1.15 | 0.81 | 0.83 | 2.53 | 152103 | 6149 | 71 | 4833 | 428 | 0 | 0 | logfile |
✔ | 6GXN | 0081 | 2024-03-27 | 2018-06-27 | 3.9 | 4.79 | — | 4.3 | 0.003 | 0.80 | 4.0 | 0.04 | 22.41 | 0.01 | 1.098 | 6.08 | 0.17 | 8.1 | 91.4 | 0.5 | -4.05 | 0.86 | 0.83 | 0.48 | 4.3 | 0.007 | 0.79 | 2.0 | 0.04 | 23.58 | 0.01 | 1.518 | 32.86 | 7.73 | 10.7 | 89.0 | 0.3 | -1.99 | 1.82 | 0.88 | 0.88 | 0.70 | 151860 | 6741 | 59 | 4638 | 1 | 0 | 0 | logfile |
✔ | 7ACJ | 11717 | 2024-03-27 | 2020-09-11 | 3.2 | 3.44 | 3.22 | 3.1 | 0.003 | 0.61 | 19.0 | 0.03 | 23.55 | 0.02 | 0.852 | 13.29 | 0.61 | 5.1 | 94.7 | 0.2 | -0.99 | 0.85 | 0.81 | 1.87 | 3.1 | 0.004 | 0.70 | 3.0 | 0.04 | 23.84 | 0.01 | 1.044 | 15.30 | 4.30 | 7.3 | 92.6 | 0.1 | -1.20 | 0.61 | 0.88 | 0.87 | 2.04 | 151803 | 5864 | 64 | 4920 | 310 | 0 | 0 | logfile |
✔ | 6WH7 | 21668 | 2024-03-01 | 2020-04-07 | 2.78 | 2.79 | — | 2.9 | 0.011 | 0.89 | 0.0 | 0.07 | 9.91 | 0.01 | 1.989 | 20.54 | 0.71 | 3.5 | 96.2 | 0.3 | -1.50 | 0.74 | 0.88 | 5.74 | 2.9 | 0.005 | 0.71 | 0.0 | 0.05 | 15.53 | 0.00 | 2.074 | 13.56 | 3.66 | 6.5 | 93.4 | 0.1 | -1.14 | 0.57 | 0.72 | 0.88 | 4.19 | 151800 | 19020 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ACR | 11718 | 2024-03-27 | 2020-09-11 | 3.44 | 3.72 | 3.11 | 2.6 | 0.003 | 0.65 | 21.0 | 0.04 | 23.55 | 0.02 | 0.444 | 14.05 | 1.77 | 5.3 | 94.3 | 0.4 | -1.02 | 0.87 | 0.78 | 1.12 | 2.5 | 0.004 | 0.70 | 0.0 | 0.04 | 23.96 | 0.01 | 1.051 | 19.40 | 4.59 | 7.8 | 92.1 | 0.1 | -1.60 | 1.63 | 0.89 | 0.84 | 1.23 | 151668 | 5858 | 66 | 4920 | 214 | 0 | 0 | logfile |
✘ | 7PiW | 13455 | 2024-03-27 | 2021-08-23 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 151508 | 14859 | 161 | 0 | 703 | 0 | 0 | logfile |
✔ | 6GWT | 0076 | 2024-03-27 | 2018-06-25 | 3.8 | 4.53 | — | 4.2 | 0.004 | 0.84 | 5.0 | 0.04 | 22.39 | 0.01 | 1.272 | 6.02 | 0.19 | 8.2 | 91.3 | 0.5 | -4.05 | 0.85 | 0.83 | 0.58 | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 23.43 | 0.01 | 1.975 | 25.61 | 6.83 | 11.0 | 88.6 | 0.4 | -1.97 | 1.77 | 0.87 | 0.88 | 0.79 | 151484 | 6670 | 59 | 4639 | 1 | 0 | 0 | logfile |
✔ | 6GXo | 0082 | 2024-03-27 | 2018-06-27 | 3.9 | 4.77 | — | 4.3 | 0.004 | 0.82 | 4.0 | 0.04 | 22.42 | 0.01 | 0.695 | 7.13 | 0.15 | 8.2 | 91.3 | 0.5 | -3.98 | 0.85 | 0.83 | 0.32 | 4.3 | 0.003 | 0.69 | 0.0 | 0.03 | 23.42 | 0.00 | 2.039 | 21.91 | 5.57 | 9.4 | 90.3 | 0.2 | -1.77 | 1.78 | 0.87 | 0.87 | 0.66 | 151479 | 6643 | 59 | 4643 | 1 | 0 | 0 | logfile |
✔ | 5o61 | 3751 | 2024-03-27 | 2017-06-03 | 3.31 | 3.39 | — | 3.3 | 0.007 | 0.99 | 0.0 | 0.04 | 24.46 | 0.01 | 1.579 | 7.50 | 10.91 | 4.7 | 95.1 | 0.2 | -3.02 | 0.83 | 0.88 | 2.03 | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 23.97 | 0.00 | 1.052 | 11.55 | 7.11 | 4.7 | 95.3 | 0.0 | -0.14 | 0.65 | 0.83 | 0.87 | 1.63 | 151463 | 6088 | 73 | 4830 | 631 | 0 | 0 | logfile |
✔ | 6C4i | 7341 | 2024-03-27 | 2018-01-12 | 3.24 | 3.32 | 3.41 | 3.4 | 0.007 | 1.19 | 44.0 | 0.10 | 23.94 | 0.02 | 1.796 | 5.21 | 9.75 | 4.2 | 95.4 | 0.4 | -0.69 | 0.55 | 0.81 | 1.76 | 3.3 | 0.004 | 0.64 | 1.0 | 0.04 | 23.36 | 0.01 | 1.885 | 11.33 | 5.02 | 4.0 | 96.0 | 0.1 | -0.07 | 0.60 | 0.61 | 0.84 | 1.94 | 151446 | 6381 | 72 | 4717 | 319 | 2 | 0 | logfile |
✔ | 7LVK | 23539 | 2024-03-27 | 2021-02-25 | 2.2 | 2.31 | — | 2.4 | 0.009 | 0.92 | 8.0 | 0.06 | 23.30 | 0.02 | 1.324 | 2.41 | 0.81 | 5.1 | 94.8 | 0.2 | -2.34 | 0.64 | 0.86 | 5.37 | 2.4 | 0.004 | 0.66 | 0.0 | 0.04 | 23.38 | 0.01 | 1.004 | 5.80 | 2.34 | 4.8 | 95.1 | 0.1 | -0.29 | 0.96 | 0.67 | 0.88 | 5.08 | 151436 | 3222 | 63 | 3016 | 181 | 2716 | 58704 | logfile |
✔ | 6GXM | 0080 | 2024-03-27 | 2018-06-27 | 3.8 | 4.73 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.04 | 22.40 | 0.01 | 1.322 | 6.07 | 0.20 | 8.4 | 91.2 | 0.4 | -4.08 | 0.85 | 0.83 | 0.31 | 4.3 | 0.005 | 0.73 | 0.0 | 0.04 | 23.42 | 0.01 | 2.033 | 27.01 | 5.68 | 10.3 | 89.4 | 0.2 | -1.79 | 1.78 | 0.87 | 0.87 | 0.41 | 151394 | 6643 | 59 | 4639 | 1 | 0 | 0 | logfile |
✔ | 8AAF | 15296 | 2024-03-27 | 2022-07-01 | 2.5 | 3.21 | — | 2.7 | 0.006 | 0.92 | 8.0 | 0.05 | 21.66 | 0.01 | 1.419 | 4.21 | 1.14 | 3.8 | 96.1 | 0.1 | -0.37 | 0.90 | 0.85 | 3.18 | 2.7 | 0.003 | 0.60 | 1.0 | 0.04 | 21.65 | 0.00 | 1.978 | 9.22 | 1.57 | 4.0 | 95.9 | 0.0 | 0.57 | 1.15 | 0.92 | 0.89 | 2.83 | 151377 | 9427 | 69 | 3640 | 41 | 0 | 0 | logfile |