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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8VK3 | 43299 | 2024-03-26 | 2024-01-08 | 3.21 | 3.09 | — | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 14.00 | 0.00 | 1.591 | 6.88 | 0.05 | 2.2 | 97.8 | 0.0 | 1.48 | 0.87 | 0.86 | 3.39 | 3.0 | 0.005 | 0.67 | 0.0 | 0.04 | 15.59 | 0.00 | 2.072 | 8.57 | 1.16 | 2.5 | 97.5 | 0.0 | 1.46 | 0.96 | 0.90 | 0.90 | 3.32 | 148852 | 18672 | 20 | 0 | 12 | 0 | 0 | logfile |
✔ | 8VJK | 43284 | 2024-03-21 | 2024-01-07 | 2.92 | 3.34 | 3.08 | 3.0 | 0.003 | 0.69 | 0.0 | 0.04 | 14.13 | 0.00 | 1.955 | 5.07 | 0.05 | 1.9 | 98.1 | 0.0 | 2.22 | 0.89 | 0.89 | 3.55 | 3.0 | 0.007 | 0.62 | 0.0 | 0.04 | 15.40 | 0.00 | 2.060 | 6.04 | 0.80 | 2.1 | 97.9 | 0.0 | 1.90 | 0.35 | 0.91 | 0.93 | 3.60 | 143248 | 17920 | 12 | 0 | 28 | 0 | 0 | logfile |
✔ | 8VE0 | 43160 | 2024-03-10 | 2023-12-18 | 3.1 | 2.92 | 2.99 | 3.1 | 0.006 | 0.62 | 0.0 | 0.05 | 13.41 | 0.00 | 2.234 | 5.96 | 0.57 | 0.2 | 99.8 | 0.0 | 1.74 | 0.73 | 0.79 | 4.26 | 3.1 | 0.002 | 0.54 | 0.0 | 0.05 | 14.87 | 0.00 | 2.195 | 7.99 | 1.71 | 1.5 | 98.5 | 0.0 | 1.32 | 0.36 | 0.74 | 0.81 | 3.46 | 3527 | 466 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8VDE | 43147 | 2024-03-15 | 2023-12-14 | 3.4 | 3.79 | 3.62 | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 13.48 | 0.01 | 2.235 | 1.81 | 0.09 | 3.4 | 96.6 | 0.0 | -1.45 | 0.59 | 0.79 | 2.60 | 3.7 | 0.005 | 0.66 | 0.0 | 0.04 | 16.66 | 0.00 | 2.122 | 9.67 | 2.20 | 3.5 | 96.5 | 0.0 | 0.70 | 0.89 | 0.61 | 0.85 | 1.94 | 70177 | 8643 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VDC | 43146 | 2024-03-25 | 2023-12-14 | 3.5 | 3.36 | 3.50 | 3.3 | 0.006 | 0.75 | 0.0 | 0.05 | 13.43 | 0.01 | 2.377 | 1.34 | 0.00 | 2.1 | 97.9 | 0.0 | -1.87 | 0.80 | 0.85 | 3.14 | 3.3 | 0.004 | 0.54 | 0.0 | 0.04 | 15.11 | 0.00 | 2.223 | 4.26 | 1.08 | 2.3 | 97.7 | 0.0 | 0.96 | 1.47 | 0.81 | 0.86 | 2.68 | 47064 | 5736 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VD8 | 43145 | 2024-03-25 | 2023-12-14 | 3.2 | 2.93 | 3.17 | 3.1 | 0.007 | 0.81 | 0.0 | 0.05 | 13.73 | 0.01 | 2.181 | 0.80 | 0.00 | 1.9 | 98.1 | 0.0 | -0.87 | 0.66 | 0.83 | 3.38 | 3.1 | 0.004 | 0.60 | 0.0 | 0.04 | 16.85 | 0.00 | 2.133 | 5.98 | 2.97 | 2.4 | 97.6 | 0.0 | 0.53 | 0.69 | 0.65 | 0.84 | 3.00 | 47880 | 5832 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VC2 | 43130 | 2024-03-15 | 2023-12-13 | 3.98 | 4.39 | 3.99 | 4.4 | 0.006 | 0.84 | 0.0 | 0.04 | 14.09 | 0.01 | 2.353 | 2.91 | 0.31 | 2.4 | 97.6 | 0.0 | -0.98 | 0.57 | 0.71 | 1.08 | 4.4 | 0.004 | 0.96 | 1.0 | 0.04 | 16.35 | 0.01 | 2.236 | 10.63 | 4.64 | 2.7 | 97.3 | 0.0 | 1.52 | 2.23 | 0.56 | 0.73 | 1.08 | 11796 | 1516 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8VC1 | 43129 | 2024-03-16 | 2023-12-13 | 2.85 | 3.23 | 2.92 | 3.2 | 0.012 | 1.46 | 0.0 | 0.06 | 17.03 | 0.01 | 2.196 | 4.03 | 0.30 | 2.1 | 97.9 | 0.0 | -1.02 | 0.59 | 0.82 | 3.63 | 3.2 | 0.003 | 0.51 | 0.0 | 0.03 | 16.24 | 0.00 | 2.232 | 8.98 | 1.34 | 1.4 | 98.6 | 0.0 | 4.06 | 0.45 | 0.56 | 0.80 | 2.26 | 13128 | 1564 | 8 | 0 | 32 | 0 | 0 | logfile |
✔ | 8V9L | 43076 | 2024-03-03 | 2023-12-08 | 3.0 | 3.32 | 3.04 | 3.2 | 0.005 | 0.62 | 0.0 | 0.04 | 22.85 | 0.01 | 2.110 | 6.59 | 0.00 | 4.6 | 95.3 | 0.1 | -0.83 | 0.78 | 0.88 | 3.22 | 3.2 | 0.006 | 0.66 | 1.0 | 0.04 | 22.89 | 0.01 | 2.085 | 6.79 | 2.47 | 4.8 | 95.2 | 0.0 | -0.34 | 0.25 | 0.78 | 0.89 | 2.76 | 155647 | 6849 | 62 | 4781 | 2 | 0 | 0 | logfile |
✔ | 8V9K | 43075 | 2024-03-01 | 2023-12-08 | 3.1 | 4.08 | 3.09 | 3.2 | 0.003 | 0.54 | 0.0 | 0.03 | 23.07 | 0.01 | 2.059 | 7.46 | 0.00 | 4.3 | 95.6 | 0.0 | -1.26 | 0.87 | 0.78 | 2.34 | 3.2 | 0.005 | 0.65 | 0.0 | 0.04 | 23.13 | 0.00 | 1.870 | 12.86 | 3.58 | 5.0 | 94.9 | 0.1 | -0.38 | 0.50 | 0.93 | 0.90 | 2.15 | 153253 | 6559 | 61 | 4787 | 2 | 0 | 0 | logfile |
✔ | 8V9J | 43074 | 2024-03-01 | 2023-12-08 | 3.1 | 3.49 | 3.07 | 3.3 | 0.004 | 0.56 | 0.0 | 0.04 | 22.95 | 0.01 | 2.090 | 5.54 | 0.00 | 4.4 | 95.6 | 0.0 | -0.82 | 0.89 | 0.90 | 3.08 | 3.3 | 0.007 | 0.65 | 0.0 | 0.04 | 22.83 | 0.01 | 2.055 | 6.87 | 2.49 | 4.9 | 95.1 | 0.0 | 0.15 | 0.93 | 0.88 | 0.92 | 2.64 | 153055 | 6551 | 61 | 4779 | 2 | 0 | 0 | logfile |
✔ | 8V8D | 43035 | 2024-03-21 | 2023-12-05 | 3.31 | 2.50 | 3.43 | 3.4 | 0.012 | 1.07 | 0.0 | 0.06 | 13.25 | 0.01 | 2.196 | 4.47 | 0.12 | 3.4 | 96.6 | 0.0 | -1.57 | 0.66 | 0.72 | 3.33 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 14.04 | 0.00 | 2.057 | 7.36 | 0.82 | 3.3 | 96.7 | 0.0 | 0.26 | 0.69 | 0.70 | 0.77 | 3.02 | 30774 | 1886 | 15 | 0 | 33 | 0 | 15085 | logfile |
✔ | 8V8C | 43034 | 2024-03-21 | 2023-12-05 | 3.29 | 2.54 | 3.42 | 3.3 | 0.012 | 1.09 | 1.0 | 0.06 | 13.74 | 0.01 | 2.198 | 6.39 | 0.06 | 4.0 | 96.0 | 0.0 | -1.75 | 0.69 | 0.75 | 3.32 | 3.3 | 0.004 | 0.57 | 0.0 | 0.04 | 14.36 | 0.00 | 2.047 | 8.36 | 0.65 | 3.0 | 97.0 | 0.0 | 0.19 | 0.60 | 0.70 | 0.79 | 3.52 | 30630 | 1879 | 15 | 0 | 33 | 0 | 15011 | logfile |
✔ | 8V8B | 43033 | 2024-03-25 | 2023-12-05 | 2.4 | 2.48 | 2.49 | 2.5 | 0.005 | 0.87 | 0.0 | 0.06 | 13.66 | 0.01 | 2.320 | 1.00 | 0.23 | 2.7 | 97.3 | 0.0 | -0.78 | 0.77 | 0.85 | 4.46 | 2.5 | 0.003 | 0.71 | 2.0 | 0.04 | 15.79 | 0.00 | 1.849 | 2.85 | 1.42 | 1.6 | 98.4 | 0.0 | 1.49 | 1.63 | 0.75 | 0.85 | 3.19 | 50700 | 6188 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 8V8A | 43032 | 2024-03-23 | 2023-12-05 | 2.19 | 1.99 | 2.21 | 2.0 | 0.012 | 1.16 | 0.0 | 0.06 | 19.81 | 0.01 | 2.220 | 4.07 | 0.56 | 2.1 | 97.9 | 0.0 | -0.64 | 0.67 | 0.80 | 6.21 | 2.0 | 0.003 | 0.56 | 0.0 | 0.04 | 15.93 | 0.00 | 2.035 | 8.48 | 0.67 | 1.5 | 98.5 | 0.0 | 1.10 | 1.90 | 0.68 | 0.82 | 5.81 | 33560 | 1970 | 25 | 0 | 65 | 155 | 15935 | logfile |
✔ | 8V89 | 43031 | 2024-03-22 | 2023-12-05 | 2.53 | 2.23 | 2.64 | 2.3 | 0.008 | 0.98 | 0.0 | 0.06 | 15.42 | 0.01 | 2.287 | 4.68 | 0.56 | 4.1 | 95.9 | 0.0 | -1.75 | 0.63 | 0.80 | 5.26 | 2.3 | 0.004 | 0.61 | 0.0 | 0.04 | 15.68 | 0.00 | 1.974 | 7.50 | 1.73 | 1.6 | 98.4 | 0.0 | 1.14 | 0.46 | 0.65 | 0.83 | 5.08 | 32725 | 1970 | 25 | 0 | 40 | 70 | 15855 | logfile |
✔ | 8V88 | 43030 | 2024-03-22 | 2023-12-05 | 2.3 | 2.36 | 2.26 | 2.3 | 0.033 | 0.98 | 0.0 | 0.06 | 18.17 | 0.01 | 2.299 | 3.68 | 0.00 | 3.6 | 96.4 | 0.0 | -0.70 | 0.73 | 0.84 | 4.91 | 2.3 | 0.003 | 0.65 | 0.0 | 0.04 | 18.27 | 0.00 | 2.128 | 5.22 | 0.34 | 1.6 | 98.4 | 0.0 | 0.89 | 0.38 | 0.73 | 0.86 | 4.86 | 33190 | 1970 | 25 | 0 | 60 | 100 | 15865 | logfile |
✔ | 8V86 | 43025 | 2024-03-22 | 2023-12-04 | 2.47 | 2.51 | 2.39 | 2.5 | 0.031 | 0.95 | 0.0 | 0.06 | 18.45 | 0.01 | 2.384 | 4.87 | 0.00 | 3.6 | 96.4 | 0.0 | -1.05 | 0.67 | 0.81 | 4.37 | 2.5 | 0.003 | 0.64 | 0.0 | 0.04 | 17.80 | 0.00 | 2.120 | 5.63 | 0.95 | 1.9 | 98.1 | 0.0 | 0.72 | 0.34 | 0.72 | 0.85 | 4.25 | 33020 | 1970 | 25 | 0 | 50 | 65 | 15835 | logfile |
✔ | 8V82 | 43015 | 2024-03-22 | 2023-12-04 | 2.61 | 2.68 | 2.57 | 2.7 | 0.012 | 1.10 | 0.0 | 0.06 | 19.23 | 0.01 | 2.199 | 2.18 | 0.00 | 3.1 | 96.9 | 0.0 | -1.47 | 0.67 | 0.79 | 4.20 | 2.7 | 0.003 | 0.55 | 0.0 | 0.04 | 15.26 | 0.00 | 1.995 | 8.87 | 0.62 | 2.3 | 97.7 | 0.0 | 0.16 | 1.18 | 0.69 | 0.81 | 4.37 | 33265 | 1970 | 25 | 0 | 65 | 45 | 15825 | logfile |
✔ | 8V80 | 43012 | 2024-03-22 | 2023-12-04 | 2.34 | 2.34 | 2.25 | 2.3 | 0.014 | 1.16 | 0.0 | 0.07 | 17.79 | 0.01 | 2.331 | 3.29 | 0.00 | 2.8 | 97.2 | 0.0 | -1.28 | 0.69 | 0.79 | 5.40 | 2.3 | 0.003 | 0.60 | 0.0 | 0.04 | 14.54 | 0.00 | 2.127 | 6.92 | 0.62 | 1.7 | 98.3 | 0.0 | 0.73 | 1.59 | 0.69 | 0.80 | 5.19 | 33080 | 1970 | 25 | 0 | 60 | 55 | 15835 | logfile |