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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7NK9 | 12434 | 2024-03-17 | 2021-02-17 | 2.9 | 3.29 | — | 3.2 | 0.003 | 0.50 | 0.0 | 0.04 | 13.03 | 0.00 | 2.087 | 6.80 | 0.00 | 2.9 | 97.1 | 0.0 | 1.61 | 0.68 | 0.86 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18081 | 1225 | 14 | 0 | 0 | 0 | 9158 | logfile |
✘ | 7NWL | 12634 | 2024-03-16 | 2021-03-17 | 3.1 | 3.95 | 3.38 | 3.5 | 0.013 | 1.48 | 0.0 | 0.11 | 14.02 | 0.02 | 1.790 | 40.24 | 0.93 | 1.9 | 98.0 | 0.1 | 0.97 | 0.80 | 0.66 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13904 | 1747 | 17 | 0 | 40 | 0 | 0 | logfile |
✘ | 6K0A | 30036 | 2024-03-18 | 2019-05-05 | 4.6 | 4.81 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 22.49 | 0.01 | 2.316 | 2.94 | 0.83 | 5.3 | 94.7 | 0.0 | -4.65 | 0.80 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 1364 | 14 | 516 | 2 | 0 | 0 | logfile |
✘ | 6EoJ | 3908 | 2024-03-16 | 2017-10-09 | 3.55 | 3.58 | 3.51 | 3.6 | 0.007 | 1.33 | 7.0 | 0.09 | 16.65 | 0.00 | 2.526 | 9.73 | 4.80 | 10.1 | 88.2 | 1.7 | -3.75 | 0.59 | 0.78 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13688 | 1710 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 6SB3 | 10134 | 2024-03-16 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 13.00 | 0.00 | 2.104 | 13.24 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✘ | 6X6A | 22074 | 2024-03-18 | 2020-05-27 | 3.6 | 3.58 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.08 | 14.43 | 0.01 | 2.206 | 13.75 | 0.45 | 7.5 | 92.4 | 0.1 | -2.80 | 0.86 | 0.83 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20240 | 2524 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SCT | 0126 | 2024-03-24 | 2019-07-25 | 4.69 | 4.38 | 4.14 | 4.0 | 0.004 | 0.75 | 3.0 | 0.04 | 15.13 | 0.00 | 2.104 | 6.11 | 0.27 | 7.5 | 92.4 | 0.1 | -3.74 | 0.81 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40680 | 4947 | 15 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U0M | 20607 | 2024-03-24 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.86 | 0.01 | 2.211 | 9.80 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✘ | 8HTU | 35018 | 2024-03-11 | 2022-12-21 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57715 | 5089 | 51 | 0 | 366 | 2 | 0 | logfile |
✘ | 6Y5A | 10692 | 2024-03-22 | 2020-02-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32403 | 1940 | 10 | 0 | 5 | 0 | 16272 | logfile |
✘ | 6RKV | 4912 | 2024-03-16 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 6K7M | 9941 | 2024-03-15 | 2019-06-07 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10591 | 1307 | 5 | 0 | 9 | 0 | 0 | logfile |
✘ | 7PLS | 13499 | 2024-03-16 | 2021-09-01 | 2.49 | 2.49 | — | 2.6 | 0.003 | 0.58 | 0.0 | 0.05 | 16.35 | 0.00 | 2.275 | 4.66 | 1.33 | 5.6 | 94.4 | 0.0 | 0.35 | 0.74 | 0.86 | 5.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14224 | 1724 | 12 | 0 | 4 | 52 | 0 | logfile |
✘ | 7LY2 | 23582 | 2024-03-22 | 2021-03-05 | 2.5 | 2.61 | 2.57 | 2.6 | 0.011 | 1.24 | 3.0 | 0.08 | 11.26 | 0.01 | 2.427 | 0.64 | 0.19 | 1.6 | 98.4 | 0.0 | 0.74 | 0.72 | 0.76 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33444 | 4470 | 27 | 0 | 69 | 0 | 0 | logfile |
✘ | 7ATE | 11921 | 2024-03-14 | 2020-10-30 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9056 | 1098 | 10 | 0 | 9 | 145 | 0 | logfile |
✘ | 6WW7 | 21929 | 2024-03-17 | 2020-05-08 | 3.4 | 3.55 | 3.33 | 3.5 | 0.005 | 0.58 | 0.0 | 0.04 | 15.89 | 0.00 | 2.145 | 6.99 | 2.92 | 2.9 | 97.1 | 0.0 | -2.34 | 0.76 | 0.84 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16576 | 2060 | 13 | 0 | 20 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2024-03-12 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.59 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6QEL | 4537 | 2024-03-12 | 2019-01-08 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64816 | 4092 | 24 | 0 | 24 | 0 | 32302 | logfile |
✘ | 6JEo | 9807 | 2024-03-19 | 2019-02-06 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 6A96 | 6998 | 2024-03-17 | 2018-07-11 | 3.51 | 4.46 | — | 4.3 | 0.008 | 1.02 | 0.0 | 0.06 | 16.06 | 0.01 | 2.158 | 6.24 | 0.22 | 7.3 | 92.7 | 0.0 | -3.71 | 0.74 | 0.77 | 1.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17049 | 2043 | 19 | 0 | 44 | 0 | 0 | logfile |