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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7DD9 | 30650 | 2024-04-16 | 2020-10-28 | 2.4 | 2.49 | 2.37 | 2.4 | 0.007 | 0.71 | 0.0 | 0.05 | 15.88 | 0.00 | 1.932 | 8.69 | 1.93 | 7.1 | 92.9 | 0.0 | -1.19 | 0.79 | 0.87 | 4.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37149 | 4516 | 12 | 0 | 12 | 949 | 0 | logfile |
✘ | 6GEJ | 4395 | 2024-04-17 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 18.74 | 0.00 | 1.491 | 9.10 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✘ | 7DZ8 | 30926 | 2024-04-10 | 2021-01-23 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69460 | 5986 | 55 | 0 | 471 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2024-04-07 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2024-04-05 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✘ | 6UZV | 20963 | 2024-04-11 | 2019-11-15 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72606 | 6711 | 60 | 0 | 408 | 0 | 0 | logfile |
✘ | 7VYE | 32202 | 2024-04-16 | 2021-11-14 | 3.1 | 3.13 | — | 3.1 | 0.007 | 0.91 | 2.0 | 0.05 | 17.86 | 0.01 | 2.053 | 11.90 | 0.27 | 4.3 | 95.6 | 0.1 | 1.26 | 0.75 | 0.86 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38846 | 4652 | 43 | 0 | 23 | 0 | 0 | logfile |
✘ | 6VoF | 21262 | 2024-04-15 | 2020-01-30 | 4.51 | 4.36 | — | 3.7 | 0.007 | 1.03 | 0.0 | 0.05 | 15.51 | 0.01 | 2.176 | 15.23 | 0.76 | 8.3 | 91.6 | 0.1 | -3.59 | 0.84 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35182 | 5175 | 31 | 0 | 5 | 0 | 0 | logfile |
✘ | 5NV3 | 3699 | 2024-04-16 | 2017-05-03 | 3.39 | 3.43 | — | 3.4 | 0.007 | 1.22 | 2.0 | 0.07 | 14.59 | 0.00 | 2.164 | 2.84 | 0.94 | 5.6 | 94.2 | 0.2 | -2.82 | 0.09 | 0.16 | 3.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37816 | 4768 | 24 | 0 | 16 | 0 | 0 | logfile |
✘ | 6M32 | 30069 | 2024-04-11 | 2020-03-02 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23566 | 2523 | 13 | 0 | 67 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-04-07 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 8A94 | 15269 | 2024-04-14 | 2022-06-27 | 2.4 | 2.82 | 2.71 | 2.7 | 0.007 | 1.10 | 1.0 | 0.07 | 14.51 | 0.01 | 2.046 | 6.57 | 0.66 | 5.3 | 94.7 | 0.1 | -0.60 | 0.67 | 0.57 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30862 | 3864 | 19 | 0 | 57 | 0 | 0 | logfile |
✘ | 7R88 | 24311 | 2024-04-07 | 2021-06-26 | 3.5 | 3.76 | — | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 12.49 | 0.00 | 2.274 | 5.35 | 1.02 | 3.5 | 96.5 | 0.0 | -1.50 | 0.69 | 0.85 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10787 | 1368 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YBD | 10769 | 2024-04-14 | 2020-03-16 | 3.3 | 3.91 | 3.79 | 3.8 | 0.009 | 1.08 | 0.0 | 0.06 | 15.55 | 0.01 | 2.262 | 5.95 | 0.55 | 9.3 | 90.6 | 0.2 | -4.02 | 0.51 | 0.72 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30742 | 4421 | 19 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JT1 | 22466 | 2024-04-17 | 2020-08-16 | 3.3 | 3.84 | 3.70 | 3.5 | 0.007 | 0.99 | 0.0 | 0.08 | 22.46 | 0.01 | 2.234 | 13.03 | 1.20 | 10.8 | 87.1 | 2.0 | -5.23 | 0.88 | 0.83 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145600 | 5828 | 55 | 4659 | 0 | 0 | 0 | logfile |
✘ | 7CoY | 30420 | 2024-04-06 | 2020-08-05 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57966 | 6096 | 66 | 0 | 279 | 84 | 0 | logfile |
✘ | 6N0G | 9315 | 2024-04-06 | 2018-11-07 | 3.6 | 3.75 | — | 3.7 | 0.008 | 0.87 | 0.0 | 0.06 | 8.90 | 0.01 | 2.232 | 6.43 | 0.18 | 2.7 | 97.3 | 0.0 | -3.39 | 0.81 | 0.85 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55644 | 7545 | 57 | 0 | 0 | 0 | 0 | logfile |
✘ | 5SZS | 8331 | 2024-04-14 | 2016-08-15 | 3.4 | 3.57 | — | 3.5 | 0.024 | 3.04 | 3.0 | 0.20 | 18.25 | 0.01 | 1.476 | 3.47 | 0.68 | 5.7 | 93.7 | 0.6 | -0.27 | 0.85 | 0.83 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30306 | 3531 | 69 | 0 | 222 | 0 | 0 | logfile |
✘ | 7XTB | 33445 | 2024-04-06 | 2022-05-16 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8101 | 1037 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7E2Y | 30972 | 2024-04-06 | 2021-02-07 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6987 | 868 | 4 | 0 | 6 | 0 | 0 | logfile |