Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MiL	23855	2023-04-26	2021-04-17	3.86	3.21	—	3.2	0.007	1.17	0.0	0.05	12.79	0.01	2.304	2.86	0.68	4.4	95.4	0.2	-5.90	0.75	0.77	2.34	3.2	0.002	0.62	0.0	0.04	15.36	0.00	2.074	7.05	0.26	3.9	96.1	0.0	-0.93	1.53	0.75	0.78	1.91	21753	2624	8	0	9	0	0	logfile
✔	7MR3	23955	2023-04-26	2021-05-07	3.6	4.01	—	3.9	0.005	0.83	0.0	0.05	16.39	0.01	2.250	5.33	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.002	0.59	0.0	0.04	17.78	0.00	2.192	8.70	0.08	5.4	94.6	0.0	0.26	0.31	0.83	0.83	1.25	23615	2854	5	40	0	0	0	logfile
✔	7KKK	22907	2023-04-19	2020-10-27	3.03	3.38	3.82	3.3	0.021	1.74	3.0	0.12	10.44	0.01	2.364	0.75	0.21	1.8	98.2	0.0	0.60	0.63	0.82	3.30	3.3	0.002	0.57	0.0	0.04	14.50	0.00	1.873	4.96	0.28	1.9	98.1	0.0	0.57	1.49	0.62	0.84	3.19	52320	3360	21	0	54	0	25449	logfile
✔	8CRT	26958	2023-04-24	2022-05-11	3.0	2.91	3.16	3.0	0.003	0.58	0.0	0.04	11.34	0.01	2.205	5.06	2.36	1.5	98.5	0.0	1.86	0.51	0.72	2.69	3.0	0.002	0.56	0.0	0.04	14.37	0.00	2.138	8.10	1.36	1.5	98.5	0.0	2.28	0.65	0.51	0.83	2.40	17925	2305	12	0	6	0	0	logfile
✔	7Wo9	32643	2023-04-22	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.002	0.51	0.0	0.04	16.20	0.00	2.164	5.55	1.21	4.7	95.3	0.0	1.88	0.74	0.72	0.81	1.85	12743	1581	1	0	0	0	0	logfile
✔	7DTW	30856	2023-04-21	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.74	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.05	12.54	0.00	2.233	7.27	0.00	8.1	91.9	0.0	-1.09	0.58	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	6HJR	0237	2023-04-22	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.13	0.0	0.07	11.24	0.01	2.200	6.58	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.002	0.65	0.0	0.04	12.00	0.00	2.090	9.54	0.00	7.3	92.5	0.1	-0.81	0.60	0.83	0.87	—	12579	1578	19	0	31	0	0	logfile
✔	8A8U	15240	2023-04-28	2022-06-24	3.62	3.92	3.73	3.8	0.004	0.83	0.0	0.05	15.49	0.01	2.196	8.04	0.04	3.4	96.6	0.0	-0.39	0.78	0.76	1.16	3.8	0.002	0.66	0.0	0.04	16.69	0.00	2.157	12.61	0.18	2.8	97.2	0.0	0.96	1.00	0.79	0.77	0.79	27129	3391	13	0	33	0	0	logfile
✔	8FMA	29290	2023-04-27	2022-12-22	3.1	3.42	3.39	3.4	0.002	0.48	0.0	0.04	11.37	0.00	1.426	7.73	0.00	2.7	97.3	0.0	1.06	0.53	0.72	2.38	3.4	0.002	0.52	0.0	0.04	13.95	0.00	2.056	6.66	0.18	2.7	97.3	0.0	2.05	1.15	0.60	0.80	2.36	72974	7227	22	0	0	0	28633	logfile
✔	7FiK	31600	2023-04-23	2021-07-31	3.7	3.41	—	2.2	0.007	0.98	1.0	0.05	9.93	0.00	1.868	3.44	3.73	6.0	93.8	0.2	-2.13	0.50	0.52	1.35	2.2	0.002	0.60	0.0	0.04	11.18	0.00	2.017	5.54	0.21	3.9	96.1	0.0	1.53	0.65	0.60	0.69	1.62	116163	19039	32	0	722	0	0	logfile
✔	6RE2	4839	2023-04-20	2019-04-12	3.2	3.21	—	3.3	0.012	1.02	0.0	0.06	14.02	0.01	1.994	5.94	0.43	4.9	94.9	0.2	-3.96	0.73	0.85	2.91	3.3	0.002	0.58	0.0	0.04	15.52	0.00	2.035	9.77	0.21	3.3	96.6	0.1	0.20	1.59	0.72	0.87	2.47	53720	7099	37	0	11	0	0	logfile
✔	7W3M	32284	2023-04-20	2021-11-25	3.5	4.51	—	3.0	0.003	0.78	0.0	0.05	14.10	0.01	1.953	5.95	0.14	6.1	93.8	0.1	-1.11	0.79	0.75	1.86	3.0	0.002	0.60	0.0	0.04	15.32	0.00	2.054	11.44	0.14	6.2	93.7	0.0	0.44	0.39	0.82	0.77	1.72	109020	13879	53	0	5	0	0	logfile
✔	6LN6	0925	2023-04-20	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.64	0.0	0.04	11.98	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.002	0.51	0.0	0.04	15.73	0.00	2.055	7.86	1.74	1.4	98.6	0.0	0.61	1.33	0.65	0.83	3.33	7836	1010	1	0	4	0	0	logfile
✔	6U5N	20650	2023-04-22	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.002	0.46	0.0	0.05	15.73	0.00	2.145	5.34	0.44	2.3	97.7	0.0	0.97	1.21	0.67	0.84	2.00	13262	1776	24	0	24	8	0	logfile
✔	7TT6	26112	2023-04-23	2022-01-31	4.3	4.50	—	4.4	0.005	0.91	0.0	0.05	10.73	0.01	2.190	3.14	0.00	1.4	98.6	0.0	0.38	0.64	0.69	—	4.4	0.002	0.57	0.0	0.04	12.24	0.00	1.969	7.27	0.00	2.4	97.6	0.0	0.18	1.18	0.66	0.75	—	14047	915	5	0	0	0	6839	logfile
✔	7S38	24819	2023-04-23	2021-09-04	3.3	3.17	3.25	3.1	0.008	0.99	0.0	0.05	15.52	0.01	2.233	2.62	0.08	4.2	95.8	0.0	-1.38	0.86	0.83	3.03	3.1	0.002	0.52	0.0	0.03	17.38	0.00	2.095	8.30	0.00	2.5	97.5	0.0	0.46	1.31	0.88	0.87	2.70	13987	1353	4	138	1	0	0	logfile
✔	7RYC	24733	2023-04-20	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.002	0.59	0.0	0.04	15.68	0.00	2.224	3.93	1.62	2.3	97.7	0.0	0.16	0.48	0.82	0.81	2.24	8277	1125	6	0	2	0	0	logfile
✔	7C8K	30306	2023-04-21	2020-06-02	3.2	3.18	—	3.1	0.002	0.51	0.0	0.05	13.62	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.2	0.002	0.53	0.0	0.04	15.61	0.00	2.224	7.42	0.20	3.4	96.6	0.0	1.64	1.13	0.85	0.83	2.87	4853	596	3	0	6	0	0	logfile
✔	7P0Z	13153	2023-04-22	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7PLS	13499	2023-04-23	2021-09-01	2.49	2.49	—	2.6	0.003	0.58	0.0	0.05	16.46	0.00	2.275	4.66	1.33	5.6	94.4	0.0	0.35	0.74	0.86	5.65	2.6	0.002	0.54	0.0	0.04	16.30	0.00	2.245	3.97	0.80	5.6	94.4	0.0	0.62	0.95	0.76	0.88	5.20	14224	1724	12	0	4	52	0	logfile

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