Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TDF	25827	2023-08-19	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.71	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.004	0.59	0.0	0.04	15.48	0.00	2.065	5.42	0.95	2.5	97.5	0.0	2.22	1.13	0.76	0.81	3.66	19566	1188	2	0	0	0	9792	logfile
✔	8CAi	16526	2023-08-24	2023-01-24	2.08	1.77	1.93	1.9	0.014	1.53	2.0	0.14	13.98	0.03	1.839	0.59	0.86	3.7	96.2	0.1	-1.66	0.65	0.81	5.19	1.9	0.005	0.84	0.0	0.05	14.26	0.01	1.790	7.42	1.41	3.0	97.0	0.0	0.45	1.58	0.74	0.85	4.96	37814	1552	33	1114	90	1416	0	logfile
✔	7EFC	31083	2023-08-09	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	15.03	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.003	0.69	0.0	0.04	14.60	0.00	1.907	5.77	0.54	2.5	97.5	0.0	0.68	0.91	0.80	0.85	5.94	4004	480	4	0	4	156	0	logfile
✔	6ZGL	11210	2023-08-14	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7VZ4	32220	2023-08-12	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.66	0.0	0.04	28.48	0.00	2.304	4.22	0.49	0.5	99.5	0.0	2.82	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	7U9Q	26405	2023-08-22	2022-03-11	3.11	3.51	—	1.9	0.003	0.85	0.0	0.04	14.10	0.01	2.065	12.40	0.66	3.4	96.5	0.1	-1.28	0.86	0.79	2.19	1.9	0.004	0.70	0.0	0.04	14.75	0.00	2.069	11.77	0.15	3.6	96.3	0.1	0.82	0.46	0.88	0.86	2.50	138608	17324	12	0	12	0	0	logfile
✔	8E9X	27967	2023-08-10	2022-08-27	2.7	2.10	2.72	1.9	0.004	0.60	0.0	0.04	12.62	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.004	0.56	0.0	0.04	15.26	0.00	2.233	7.19	1.61	3.8	96.2	0.0	0.55	0.34	0.80	0.82	3.68	8380	1109	6	0	1	0	0	logfile
✔	8E9Z	27969	2023-08-10	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.003	0.57	0.0	0.04	16.07	0.00	1.969	7.33	1.49	3.2	96.8	0.0	0.95	0.35	0.79	0.80	3.01	8566	1129	6	0	2	0	0	logfile
✔	7Z8T	14563	2023-08-15	2022-03-18	3.0	2.27	2.91	2.0	0.002	0.50	0.0	0.04	13.08	0.00	1.988	5.05	0.05	2.0	98.0	0.0	1.77	0.80	0.80	2.41	1.9	0.006	0.66	0.0	0.04	16.44	0.00	2.004	6.29	2.09	3.1	96.9	0.0	1.48	0.92	0.82	0.83	2.30	18077	2395	6	0	3	0	0	logfile
✔	7Z8V	14564	2023-08-15	2022-03-18	2.7	2.20	2.73	1.9	0.003	0.51	0.0	0.04	13.97	0.00	1.989	4.21	0.00	1.7	98.3	0.0	1.51	0.80	0.81	2.95	1.9	0.003	0.57	0.0	0.04	16.77	0.00	1.997	5.29	1.57	2.4	97.6	0.0	1.74	0.96	0.82	0.84	2.81	18313	2417	6	0	3	0	0	logfile
✔	7MKM	23899	2023-08-09	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.14	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	1.9	0.003	0.79	0.0	0.04	15.05	0.00	2.257	11.38	0.29	5.8	94.2	0.0	-2.36	0.60	0.53	0.62	1.67	3192	406	4	0	1	0	0	logfile
✔	7E9G	31031	2023-08-17	2021-03-04	3.5	2.34	—	3.1	0.004	0.59	0.0	0.10	11.66	0.00	2.196	9.69	0.00	3.8	96.2	0.0	-3.17	0.70	0.67	1.96	1.9	0.004	0.66	0.0	0.04	14.64	0.00	2.144	15.22	0.49	6.0	94.0	0.0	-1.46	0.67	0.72	0.71	1.96	18816	2557	10	0	3	0	0	logfile
✔	7P6A	13223	2023-08-09	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✔	7X29	32962	2023-08-24	2022-02-25	2.49	2.72	—	1.8	0.014	1.76	19.0	0.11	13.58	0.00	1.135	7.42	8.77	2.7	96.7	0.6	1.84	0.82	0.73	2.26	1.9	0.004	0.73	2.0	0.04	15.23	0.00	2.160	9.42	3.64	4.4	95.5	0.2	-0.26	1.73	0.88	0.86	2.86	32453	4230	7	0	0	0	0	logfile
✔	7EFD	31084	2023-08-09	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.47	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.74	0.0	0.05	14.91	0.00	1.834	7.38	0.00	3.4	96.0	0.6	0.90	0.55	0.80	0.84	6.49	4004	480	4	0	4	156	0	logfile
✔	7WPC	32682	2023-08-10	2022-01-23	2.57	2.17	—	2.0	0.004	0.72	0.0	0.05	14.23	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.003	0.61	0.0	0.04	17.18	0.00	1.955	9.72	1.62	3.9	96.1	0.0	-0.76	1.32	0.74	0.81	2.91	8057	980	6	0	9	0	0	logfile
✔	8DZR	27806	2023-08-10	2022-08-08	2.61	2.15	2.73	2.0	0.005	0.70	0.0	0.05	13.39	0.00	2.224	4.85	0.00	3.3	96.7	0.0	-0.09	0.76	0.74	3.46	1.9	0.003	0.61	0.0	0.04	15.53	0.00	2.097	8.73	1.87	4.0	96.0	0.0	0.54	0.33	0.78	0.79	3.17	7944	1073	6	0	1	0	0	logfile
✔	7USL	26738	2023-08-19	2022-04-25	2.7	2.28	—	1.9	0.004	0.61	0.0	0.05	13.68	0.00	2.106	5.30	0.00	3.2	96.8	0.0	-0.47	0.75	0.73	3.51	1.9	0.006	0.73	0.0	0.05	16.01	0.01	2.094	7.90	2.39	4.5	95.5	0.0	-0.76	0.37	0.78	0.78	3.09	19065	2464	10	0	49	0	0	logfile
✔	7NJ1	12369	2023-08-12	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.51	0.00	2.141	11.13	1.36	6.1	93.7	0.1	0.95	0.58	0.77	0.76	1.93	11096	1501	2	0	0	0	0	logfile
✔	8FN1	29303	2023-08-10	2022-12-26	2.88	2.15	2.86	1.9	0.004	0.59	0.0	0.06	9.15	0.00	2.173	7.25	0.23	2.5	97.5	0.0	1.17	0.78	0.79	4.36	1.9	0.003	0.55	0.0	0.04	13.02	0.00	2.229	6.89	2.04	3.0	97.0	0.0	1.47	0.47	0.78	0.80	3.87	8444	1116	6	0	0	0	0	logfile

• ← previous
• Page 7 of 542
• next →